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Technology
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896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
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Most cells
Fewest cells
2346
datasets
CELLxGENE
4,992 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of breast
+7
Adipocyte of breast
Breast
Breast
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of breast
Endothelial cell of lymphatic vessel
Mammary gland epithelial cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
B cell
Pericyte
Fibroblast
Tissue
Breast
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:navinlabcode/HumanBreastCellAtlas
breastatlas.org
HumanCellAtlas:1ffa2223-28a6-4133-a5a4-badd00faf4bc
GEO series:GSE195665
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Basal cell
+10
Basal cell
Skin of back
Skin of back
60-year-old stage
60-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Basal cell
Schwann cell
Smooth muscle cell
Plasmacytoid dendritic cell
Endothelial cell of vascular tree
Basal cell of epidermis
Regulatory t cell
Pericyte
Suprabasal keratinocyte
Fibroblast
Chondrocyte
Tissue
Skin of back
Developmental stage
60-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
spatial-skin-atlas.cellgeni.sanger.ac.uk
ArrayExpress BioStudies:E-MTAB-13085
HumanCellAtlas:e49e556a-da5a-442a-b45c-8691b457623e
ArrayExpress BioStudies:E-MTAB-13084
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endocardial cell
+7
Endocardial cell
Left cardiac atrium
Left cardiac atrium
Seventh decade stage
Seventh decade stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endocardial cell
Endothelial cell of lymphatic vessel
Endothelial cell of artery
Smooth muscle cell of the pulmonary artery
Adipocyte
Mesothelial cell
Regular atrial cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Left cardiac atrium
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12919
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Iga plasma cell
+5
Iga plasma cell
Labial gland
Labial gland
40-year-old stage
40-year-old stage
Immune system disorder
+1
Immune system disorder
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Iga plasma cell
Igg plasma cell
Duct epithelial cell
Acinar cell of salivary gland
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
40-year-old stage
Disease
Immune system disorder
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:pranzatelli/scRNAseqNM2023
dbGaP Study:phs002446
CELLxGENE
4,992 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+29
Transit amplifying cell of small intestine
Colon
Colon
66-year-old stage
66-year-old stage
Normal
Normal
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Intestine goblet cell
Natural killer cell
Intestinal crypt stem cell of large intestine
Secretory cell
Neuroendocrine cell
Interstitial cell of cajal
Erythroid lineage cell
Leukocyte
Gut absorptive cell
Inhibitory motor neuron
Plasmacytoid dendritic cell
Neural cell
Enteroendocrine cell
Gut endothelial cell
Group 3 innate lymphoid cell
Transit amplifying cell of colon
Macrophage
Enteric smooth muscle cell
Glial cell
Enterocyte
Motor neuron
B cell
Pericyte
Progenitor cell
Naive t cell
Intestinal crypt stem cell of small intestine
Myofibroblast cell
Fibroblast
Dendritic cell
Tissue
Colon
Developmental stage
66-year-old stage
Disease
Normal
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
GEO series:GSE158328
simmonslab.shinyapps.io
Mendeley Data Dataset:gncg57p5x9/2
dropbox.com
HumanCellAtlas:fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f
GEO series:GSE158702
CELLxGENE
4,992 cells
•
Ganier et al., 2024
Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+14
Natural killer cell
Skin of external ear
Skin of external ear
90-year-old stage
90-year-old stage
Basal cell carcinoma
Basal cell carcinoma
Male
Male
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of lymphatic vessel
Cytotoxic t cell
Cd8-positive, alpha-beta memory t cell, cd45ro-positive
Basal cell
Schwann cell
Endothelial cell of vascular tree
Basal cell of epidermis
Macrophage
Regulatory t cell
Plasma cell
Pericyte
Suprabasal keratinocyte
Fibroblast
Chondrocyte
Tissue
Skin of external ear
Developmental stage
90-year-old stage
Disease
Basal cell carcinoma
Sex
Male
Technology
Visium spatial gene expression v1
Suspension type
Related Links
spatial-skin-atlas.cellgeni.sanger.ac.uk
ArrayExpress BioStudies:E-MTAB-13085
ArrayExpress BioStudies:E-MTAB-13084
HumanCellAtlas:e49e556a-da5a-442a-b45c-8691b457623e
CELLxGENE
4,992 cells
•
Wu et al., 2021
A single-cell and spatially resolved atlas of human breast cancers
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+18
T cell
Breast
Breast
88-year-old stage
88-year-old stage
Invasive ductal breast carcinoma
Invasive ductal breast carcinoma
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
T cell
Natural killer cell
Endothelial cell of lymphatic vessel
Perivascular cell
Endothelial cell
Mature nk t cell
Cd8-positive, alpha-beta t cell
Luminal epithelial cell of mammary gland
Myoepithelial cell
Macrophage
Memory b cell
Myeloid cell
Plasmablast
Cd4-positive, alpha-beta t cell
Malignant cell
Monocyte
Naive b cell
Fibroblast
Dendritic cell
Tissue
Breast
Developmental stage
88-year-old stage
Disease
Invasive ductal breast carcinoma
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
BroadInstitute Single-Cell Portal:SCP1039/a-single-cell-and-spatially-resolved-atlas-of-human-breast-cancers
Github:Swarbricklab-code/BrCa_cell_atlas
GEO series:GSE176078
Zenodo record:4739739
EGA Study:EGAS00001005173
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of artery
+5
Endothelial cell of artery
Interventricular septum
Interventricular septum
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell of artery
Smooth muscle cell of the pulmonary artery
Glial cell
Vein endothelial cell
Regular ventricular cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Interventricular septum
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12919
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
ArrayExpress BioStudies:E-MTAB-12975
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+13
Endothelial cell
Labial gland
Labial gland
72-year-old stage
+1
72-year-old stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Smooth muscle cell
Myoepithelial cell
Cd8-positive, alpha-beta cytotoxic t cell
Macrophage
Duct epithelial cell
Acinar cell of salivary gland
Cd4-positive, alpha-beta t cell
B cell
Cd8-positive, alpha-beta regulatory t cell
Fibroblast
Dendritic cell
Tissue
Labial gland
Developmental stage
72-year-old stage
20-year-old stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:pranzatelli/scRNAseqNM2023
dbGaP Study:phs002446
CELLxGENE
4,992 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Adipocyte of breast
+7
Adipocyte of breast
Breast
Breast
Adult stage
Adult stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Adipocyte of breast
Endothelial cell of lymphatic vessel
Mammary gland epithelial cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
B cell
Pericyte
Fibroblast
Tissue
Breast
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:navinlabcode/HumanBreastCellAtlas
breastatlas.org
GEO series:GSE195665
HumanCellAtlas:1ffa2223-28a6-4133-a5a4-badd00faf4bc
CELLxGENE
4,992 cells
•
Kanemaru et al., 2023
Spatially resolved multiomics of human cardiac niches
Explore
h5ad
Homo sapiens
Homo sapiens
Endocardial cell
+9
Endocardial cell
Left cardiac atrium
Left cardiac atrium
Seventh decade stage
Seventh decade stage
Normal
Normal
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endocardial cell
Endothelial cell of artery
Smooth muscle cell of the pulmonary artery
Adipocyte
Macrophage
Glial cell
Vein endothelial cell
Pericyte
Regular atrial cardiac myocyte
Fibroblast of cardiac tissue
Tissue
Left cardiac atrium
Developmental stage
Seventh decade stage
Disease
Normal
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
heartcellatlas.org
ArrayExpress BioStudies:E-MTAB-12916
ArrayExpress BioStudies:E-MTAB-12919
ArrayExpress BioStudies:E-MTAB-12975
HumanCellAtlas:925f9a4c-cac0-444a-ad2c-612656ab3a85
CELLxGENE
4,992 cells
•
Pranzatelli et al., 2024
GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+6
Endothelial cell
Labial gland
Labial gland
52-year-old stage
+1
52-year-old stage
Sjogren syndrome
Sjogren syndrome
Female
Female
Visium spatial gene expression v1
Visium spatial gene expression v1
Organism
Homo sapiens
Cell type
Endothelial cell
Iga plasma cell
Ionocyte
Myoepithelial cell
Duct epithelial cell
Acinar cell of salivary gland
Fibroblast
Tissue
Labial gland
Developmental stage
52-year-old stage
32-year-old stage
Disease
Sjogren syndrome
Sex
Female
Technology
Visium spatial gene expression v1
Suspension type
Related Links
Github:pranzatelli/scRNAseqNM2023
dbGaP Study:phs002446
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