Mus musculus

Peripheral nervous system neuron Megakaryocyte Retinal bipolar neuron Endocardial cell Iris pigment epithelial cell Olfactory receptor cell Bladder urothelial cell Gingival epithelial cell Natural killer cell Epithelial cell of thymus Corneal epithelial cell Retinal cone cell Cranial motor neuron Splanchnic mesodermal cell Sensory neuron of dorsal root ganglion Endothelial cell of lymphatic vessel Pulmonary alveolar type 1 cell Regulatory t cell Auditory epithelial cell Kidney epithelial cell Endo-epithelial cell Intrahepatic cholangiocyte Mast cell Fibroblast Primitive erythroid progenitor Intestine goblet cell Erythroid progenitor cell Cerebral cortex gabaergic interneuron Monocyte Intestinal enteroendocrine cell Enteric neuron Pericyte Amacrine cell Notochordal cell Cajal-retzius cell Ectodermal cell Club cell Kidney collecting duct intercalated cell Mesodermal cell Myoblast Myelinating schwann cell Lateral mesodermal cell Conjunctiva goblet cell Epithelial cell of proximal tubule Ciliated cell Extraembryonic cell Neural progenitor cell Purkinje cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Kidney collecting duct principal cell Epithelial cell of thyroid gland Committed oligodendrocyte precursor Leydig cell Intermediate mesodermal cell Cerebral cortex endothelial cell T cell Retinal ganglion cell Pinealocyte Parasympathetic neuron Retinal pigment epithelial cell Type i cell of adrenal cortex Neural cell Osteoblast Myotube Vein endothelial cell Thalamic excitatory neuron Lens epithelial cell Brown adipocyte Small bistratified retinal ganglion cell Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Adipocyte Olfactory ensheathing cell Central nervous system macrophage Epithelial cell Ependymal cell Hepatocyte Epithelial cell of amnion Osteoclast Oligodendrocyte precursor cell Muscle precursor cell Conventional dendritic cell Kupffer cell Pulmonary alveolar type 2 cell Brown preadipocyte Microvascular endothelial cell Microglial cell Retinal progenitor cell Lung endothelial cell Olfactory epithelial cell Photoreceptor cell Efferent neuron Ureteric bud cell Activated cd4-negative, cd8-negative type i nk t cell Spiral ganglion neuron Pituitary gland cell Kidney connecting tubule epithelial cell Myofibroblast cell Sympathetic neuron Neuron Plasmacytoid dendritic cell Metanephric mesenchyme stem cell Epithelial cell of parathyroid gland Cardiac muscle cell Endothelial cell Gabaergic neuron Primordial germ cell Chondrocyte Respiratory tract goblet cell Adipose macrophage Embryonic blood vessel endothelial progenitor cell Retinal rod cell Myeloid suppressor cell Endothelial cell of artery Perineuronal satellite cell Brain pericyte Schwann cell precursor Pancreatic acinar cell Epithelial cell of pancreas B cell Keratinocyte Podocyte Starburst amacrine cell Cochlea auditory hair cell Melanocyte Glutamatergic neuron Choroid plexus epithelial cell Hematopoietic stem cell Hypothalamus cell Astrocyte Spinal cord motor neuron Retina horizontal cell

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus

Mus musculus

Oligodendrocyte Neuroblast (sensu vertebrata) Dopaminergic neuron Histaminergic neuron Tanycyte Monocyte Hypendymal cell Pericyte Vascular leptomeningeal cell Cholinergic neuron Macrophage Dendritic cell Olfactory ensheathing cell Ependymal cell Lymphocyte Oligodendrocyte precursor cell Microglial cell Endothelial cell Gabaergic neuron Smooth muscle cell Glycinergic neuron Bergmann glial cell Glutamatergic neuron Choroid plexus epithelial cell Astrocyte

Hippocampal formation Pallidum Hindbrain Neocortex Hypothalamus Cortical subplate Brain White matter Cerebellum Midbrain Ventricular system of brain Thalamic complex Striatum

9-week-old stage

Normal

Female

Merfish

Homo sapiens

Oligodendrocyte Natural killer cell L5/6 near-projecting glutamatergic neuron L6b glutamatergic neuron of the primary motor cortex Pericyte Vascular leptomeningeal cell Sst gabaergic interneuron L2/3 intratelencephalic projecting glutamatergic neuron T cell Lamp5 gabaergic interneuron Pvalb gabaergic interneuron Perivascular macrophage L6 corticothalamic-projecting glutamatergic cortical neuron Oligodendrocyte precursor cell Plasma cell Microglial cell L2/3-6 intratelencephalic projecting glutamatergic neuron L6 intratelencephalic projecting glutamatergic neuron Endothelial cell Gabaergic neuron Smooth muscle cell B cell Vip gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron Astrocyte

Dorsolateral prefrontal cortex

80 year-old and over stage 85-year-old stage 80-year-old stage 64-year-old stage 50-year-old stage 52-year-old stage 65-year-old stage 68-year-old stage 82-year-old stage 43-year-old stage 41-year-old stage 35-year-old stage 63-year-old stage 58-year-old stage 24-year-old stage 73-year-old stage 75-year-old stage 84-year-old stage 31-year-old stage 42-year-old stage 49-year-old stage 86-year-old stage 59-year-old stage 54-year-old stage 25-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 74-year-old stage 83-year-old stage 89-year-old stage 53-year-old stage 46-year-old stage 56-year-old stage 55-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 20-year-old stage 36-year-old stage 32-year-old stage 45-year-old stage 70-year-old stage 81-year-old stage 76-year-old stage 69-year-old stage 67-year-old stage 40-year-old stage 88-year-old stage 87-year-old stage 60-year-old stage 62-year-old stage 19-year-old stage 39-year-old stage 28-year-old stage 38-year-old stage 79-year-old stage 72-year-old stage 27-year-old stage 48-year-old stage 51-year-old stage 71-year-old stage

Progressive supranuclear palsy Normal Amyotrophic lateral sclerosis Brain neoplasm Vascular dementia Schizophrenia Lewy body dementia Alzheimer disease Multiple sclerosis Tauopathy Head injury Major depressive disorder Parkinson disease Normal pressure hydrocephalus Frontotemporal dementia Dementia Post-traumatic stress disorder

Female Male

10x 3' v3

Nucleus

Homo sapiens

Erythroblast Oligodendrocyte Syncytiotrophoblast cell Professional antigen presenting cell Megakaryocyte Endocardial cell Unipolar brush cell Epithelial cell of thymus Corneal epithelial cell Schwann cell Endothelial cell of lymphatic vessel Cell of skeletal muscle Visceromotor neuron Ciliated epithelial cell Ganglion interneuron Mesangial cell Hepatoblast Enteric neuron Amacrine cell Hematopoietic cell Cortical cell of adrenal gland Squamous epithelial cell Epithelial cell of lower respiratory tract Mueller cell Neuron associated cell (sensu vertebrata) Tuft cell Endothelial cell of vascular tree Endocrine cell Inhibitory interneuron Purkinje cell Extravillous trophoblast Intestinal epithelial cell Stellate neuron Retinal ganglion cell Mesothelial cell Chorionic trophoblast cell Retinal pigment epithelial cell Glial cell Skeletal muscle satellite cell Myeloid cell Ventricular cardiac muscle cell Pancreatic ductal cell Hepatic stellate cell Blood vessel endothelial cell Acinar cell Regular atrial cardiac myocyte Trophoblast giant cell Microglial cell Stromal cell Photoreceptor cell Taste receptor cell Goblet cell Sympathetic neuron Neuron Chromaffin cell Granule cell Cardiac muscle cell Bipolar neuron Neuroendocrine cell Gabaergic neuron Innate lymphoid cell Macroglial cell Smooth muscle cell Dermis microvascular lymphatic vessel endothelial cell Glutamatergic neuron Epicardial adipocyte Hematopoietic stem cell Lens fiber cell Astrocyte Thymocyte Retina horizontal cell

Liver Kidney Placenta Pancreas Intestine Heart Spleen Stomach Thymus Muscle organ Lung Cerebellum Eye Telencephalon Adrenal gland

15th week post-fertilization stage 14th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage 18th week post-fertilization stage

Normal Trisomy 18

Female Male

Sci-rna-seq3

Nucleus Cell

Homo sapiens

Natural killer cell Memory regulatory t cell Erythrocyte Cd14-positive, cd16-negative classical monocyte Naive b cell Transitional stage b cell Memory ccr4-positive regulatory t cell Cd1c-positive myeloid dendritic cell Common myeloid progenitor Mature gamma-delta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Double negative thymocyte Axl+ dendritic cell, human Naive thymus-derived cd4-positive, alpha-beta t cell T cell Cd14-low, cd16-positive monocyte Central memory cd4-positive, alpha-beta t cell Cd8-positive, alpha-beta memory t cell Cd8-positive, alpha-beta regulatory t cell Cd4-positive, alpha-beta memory t cell Cd16-negative, cd56-bright natural killer cell, human Be cell Common lymphoid progenitor Platelet Plasma cell Basophil mast progenitor cell Central memory cd8-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell Mucosal invariant t cell Plasmacytoid dendritic cell Cd141-positive myeloid dendritic cell Cd8aa(i) thymocyte Innate lymphoid cell Cd16-positive, cd56-dim natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Naive regulatory t cell

Blood

80 year-old and over stage 85-year-old stage 80-year-old stage 64-year-old stage 50-year-old stage 52-year-old stage 65-year-old stage 68-year-old stage 82-year-old stage 43-year-old stage 41-year-old stage 63-year-old stage 58-year-old stage 73-year-old stage 75-year-old stage 84-year-old stage 42-year-old stage 49-year-old stage 86-year-old stage 59-year-old stage 54-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 74-year-old stage 83-year-old stage 89-year-old stage 53-year-old stage 46-year-old stage 56-year-old stage 55-year-old stage 44-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 45-year-old stage 70-year-old stage 81-year-old stage 76-year-old stage 69-year-old stage 67-year-old stage 40-year-old stage 88-year-old stage 87-year-old stage 60-year-old stage 62-year-old stage 79-year-old stage 72-year-old stage 48-year-old stage 51-year-old stage 71-year-old stage

Normal Cytomegalovirus infection

Female Male

10x gene expression flex

Cell

Mus musculus

Fibroblast Mesodermal cell Lateral mesodermal cell Osteoblast Chondrocyte

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Retinal bipolar neuron Diffuse bipolar 3a cell Retinal cone cell H2 horizontal cell Diffuse bipolar 6 cell Gabaergic amacrine cell S cone cell Diffuse bipolar 2 cell Amacrine cell On parasol ganglion cell On-blue cone bipolar cell Rod bipolar cell Mueller cell Off parasol ganglion cell On midget ganglion cell Diffuse bipolar 4 cell Retinal ganglion cell Retinal pigment epithelial cell Off midget ganglion cell Flat midget bipolar cell Microglial cell Invaginating midget bipolar cell Diffuse bipolar 3b cell Diffuse bipolar 1 cell Giant bipolar cell Retinal rod cell H1 horizontal cell Starburst amacrine cell Offx cell Glycinergic amacrine cell Astrocyte

Normal

10x 3' v3

Homo sapiens

Retinal bipolar neuron Diffuse bipolar 3a cell Retinal cone cell H2 horizontal cell Diffuse bipolar 6 cell Gabaergic amacrine cell S cone cell Diffuse bipolar 2 cell Amacrine cell On parasol ganglion cell On-blue cone bipolar cell Rod bipolar cell Mueller cell Off parasol ganglion cell On midget ganglion cell Diffuse bipolar 4 cell Retinal ganglion cell Retinal pigment epithelial cell Off midget ganglion cell Flat midget bipolar cell Microglial cell Invaginating midget bipolar cell Diffuse bipolar 3b cell Diffuse bipolar 1 cell Giant bipolar cell Retinal rod cell H1 horizontal cell Starburst amacrine cell Offx cell Glycinergic amacrine cell Astrocyte

Macula lutea proper Peripheral region of retina Macula lutea Fovea centralis

80 year-old and over stage 85-year-old stage 80-year-old stage 64-year-old stage 50-year-old stage 52-year-old stage 65-year-old stage 68-year-old stage 82-year-old stage 43-year-old stage 41-year-old stage 63-year-old stage 90 year-old and over stage 15-year-old stage 58-year-old stage 24-year-old stage 73-year-old stage Late adult stage 75-year-old stage 3-year-old stage 84-year-old stage 34-year-old stage 86-year-old stage 25-year-old stage 66-year-old stage 11-year-old stage 74-year-old stage Eighth decade stage 21-year-old stage 83-year-old stage 53-year-old stage 46-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 32-year-old stage 60-79 year-old stage 70-year-old stage 81-year-old stage 76-year-old stage 69-year-old stage 67-year-old stage 88-year-old stage 60-year-old stage 62-year-old stage 16-year-old stage 10-year-old stage 18-year-old stage Prime adult stage 30-year-old stage 72-year-old stage 27-year-old stage 17-year-old stage 71-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Peripheral nervous system neuron Megakaryocyte Retinal bipolar neuron Endocardial cell Iris pigment epithelial cell Olfactory receptor cell Bladder urothelial cell Gingival epithelial cell Natural killer cell Epithelial cell of thymus Corneal epithelial cell Retinal cone cell Cranial motor neuron Splanchnic mesodermal cell Sensory neuron of dorsal root ganglion Endothelial cell of lymphatic vessel Pulmonary alveolar type 1 cell Regulatory t cell Auditory epithelial cell Kidney epithelial cell Endo-epithelial cell Intrahepatic cholangiocyte Mast cell Fibroblast Primitive erythroid progenitor Intestine goblet cell Erythroid progenitor cell Cerebral cortex gabaergic interneuron Monocyte Intestinal enteroendocrine cell Enteric neuron Pericyte Amacrine cell Notochordal cell Cajal-retzius cell Ectodermal cell Club cell Kidney collecting duct intercalated cell Mesodermal cell Myoblast Myelinating schwann cell Lateral mesodermal cell Conjunctiva goblet cell Epithelial cell of proximal tubule Ciliated cell Extraembryonic cell Neural progenitor cell Purkinje cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Kidney collecting duct principal cell Epithelial cell of thyroid gland Committed oligodendrocyte precursor Leydig cell Intermediate mesodermal cell Bistratified retinal ganglion cell Cerebral cortex endothelial cell T cell Retinal ganglion cell Pinealocyte Parasympathetic neuron Retinal pigment epithelial cell Type i cell of adrenal cortex Neural cell Osteoblast Myotube Vein endothelial cell Thalamic excitatory neuron Lens epithelial cell Brown adipocyte Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Adipocyte Olfactory ensheathing cell Central nervous system macrophage Epithelial cell Ependymal cell Hepatocyte Epithelial cell of amnion Osteoclast Oligodendrocyte precursor cell Muscle precursor cell Conventional dendritic cell Kupffer cell Pulmonary alveolar type 2 cell Brown preadipocyte Microvascular endothelial cell Microglial cell Retinal progenitor cell Lung endothelial cell Olfactory epithelial cell Photoreceptor cell Efferent neuron Activated cd4-negative, cd8-negative type i nk t cell Spiral ganglion neuron Pituitary gland cell Kidney connecting tubule epithelial cell Myofibroblast cell Sympathetic neuron Neuron Plasmacytoid dendritic cell Metanephric mesenchyme stem cell Epithelial cell of parathyroid gland Cardiac muscle cell Endothelial cell Duct epithelial cell Gabaergic neuron Primordial germ cell Chondrocyte Respiratory tract goblet cell Adipose macrophage Embryonic blood vessel endothelial progenitor cell Retinal rod cell Myeloid suppressor cell Endothelial cell of artery Perineuronal satellite cell Brain pericyte Schwann cell precursor Pancreatic acinar cell Epithelial cell of pancreas B cell Keratinocyte Podocyte Starburst amacrine cell Cochlea auditory hair cell Melanocyte Glutamatergic neuron Choroid plexus epithelial cell Hematopoietic stem cell Hypothalamus cell Astrocyte Spinal cord motor neuron Retina horizontal cell

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus

Mus musculus

Peripheral nervous system neuron Megakaryocyte Retinal bipolar neuron Endocardial cell Iris pigment epithelial cell Olfactory receptor cell Bladder urothelial cell Gingival epithelial cell Natural killer cell Epithelial cell of thymus Corneal epithelial cell Retinal cone cell Cranial motor neuron Splanchnic mesodermal cell Sensory neuron of dorsal root ganglion Endothelial cell of lymphatic vessel Pulmonary alveolar type 1 cell Regulatory t cell Auditory epithelial cell Kidney epithelial cell Endo-epithelial cell Intrahepatic cholangiocyte Mast cell Fibroblast Primitive erythroid progenitor Intestine goblet cell Erythroid progenitor cell Cerebral cortex gabaergic interneuron Monocyte Intestinal enteroendocrine cell Enteric neuron Pericyte Amacrine cell Notochordal cell Cajal-retzius cell Ectodermal cell Club cell Kidney collecting duct intercalated cell Mesodermal cell Myoblast Myelinating schwann cell Lateral mesodermal cell Conjunctiva goblet cell Epithelial cell of proximal tubule Ciliated cell Extraembryonic cell Neural progenitor cell Purkinje cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Kidney collecting duct principal cell Epithelial cell of thyroid gland Committed oligodendrocyte precursor Leydig cell Intermediate mesodermal cell Bistratified retinal ganglion cell Cerebral cortex endothelial cell T cell Retinal ganglion cell Pinealocyte Parasympathetic neuron Retinal pigment epithelial cell Type i cell of adrenal cortex Neural cell Osteoblast Myotube Vein endothelial cell Thalamic excitatory neuron Lens epithelial cell Brown adipocyte Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Adipocyte Olfactory ensheathing cell Central nervous system macrophage Epithelial cell Ependymal cell Hepatocyte Epithelial cell of amnion Osteoclast Oligodendrocyte precursor cell Muscle precursor cell Conventional dendritic cell Kupffer cell Pulmonary alveolar type 2 cell Brown preadipocyte Microvascular endothelial cell Microglial cell Retinal progenitor cell Lung endothelial cell Olfactory epithelial cell Photoreceptor cell Efferent neuron Activated cd4-negative, cd8-negative type i nk t cell Spiral ganglion neuron Pituitary gland cell Kidney connecting tubule epithelial cell Myofibroblast cell Sympathetic neuron Neuron Plasmacytoid dendritic cell Metanephric mesenchyme stem cell Epithelial cell of parathyroid gland Cardiac muscle cell Endothelial cell Duct epithelial cell Gabaergic neuron Primordial germ cell Chondrocyte Respiratory tract goblet cell Adipose macrophage Embryonic blood vessel endothelial progenitor cell Retinal rod cell Myeloid suppressor cell Endothelial cell of artery Perineuronal satellite cell Brain pericyte Schwann cell precursor Pancreatic acinar cell Epithelial cell of pancreas B cell Keratinocyte Podocyte Starburst amacrine cell Cochlea auditory hair cell Melanocyte Glutamatergic neuron Choroid plexus epithelial cell Hematopoietic stem cell Hypothalamus cell Astrocyte Spinal cord motor neuron Retina horizontal cell

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus

Mus musculus

Peripheral nervous system neuron Megakaryocyte Retinal bipolar neuron Endocardial cell Iris pigment epithelial cell Olfactory receptor cell Bladder urothelial cell Gingival epithelial cell Natural killer cell Epithelial cell of thymus Corneal epithelial cell Retinal cone cell Cranial motor neuron Splanchnic mesodermal cell Sensory neuron of dorsal root ganglion Endothelial cell of lymphatic vessel Pulmonary alveolar type 1 cell Regulatory t cell Auditory epithelial cell Kidney epithelial cell Endo-epithelial cell Intrahepatic cholangiocyte Mast cell Fibroblast Primitive erythroid progenitor Intestine goblet cell Erythroid progenitor cell Cerebral cortex gabaergic interneuron Monocyte Intestinal enteroendocrine cell Enteric neuron Pericyte Amacrine cell Notochordal cell Cajal-retzius cell Ectodermal cell Club cell Kidney collecting duct intercalated cell Mesodermal cell Myoblast Myelinating schwann cell Lateral mesodermal cell Conjunctiva goblet cell Epithelial cell of proximal tubule Ciliated cell Extraembryonic cell Neural progenitor cell Purkinje cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Kidney collecting duct principal cell Epithelial cell of thyroid gland Committed oligodendrocyte precursor Leydig cell Intermediate mesodermal cell Bistratified retinal ganglion cell Cerebral cortex endothelial cell T cell Retinal ganglion cell Pinealocyte Parasympathetic neuron Retinal pigment epithelial cell Type i cell of adrenal cortex Neural cell Osteoblast Myotube Vein endothelial cell Thalamic excitatory neuron Lens epithelial cell Brown adipocyte Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Adipocyte Olfactory ensheathing cell Central nervous system macrophage Epithelial cell Ependymal cell Hepatocyte Epithelial cell of amnion Osteoclast Oligodendrocyte precursor cell Muscle precursor cell Conventional dendritic cell Kupffer cell Pulmonary alveolar type 2 cell Brown preadipocyte Microvascular endothelial cell Microglial cell Retinal progenitor cell Lung endothelial cell Olfactory epithelial cell Photoreceptor cell Efferent neuron Activated cd4-negative, cd8-negative type i nk t cell Spiral ganglion neuron Pituitary gland cell Kidney connecting tubule epithelial cell Myofibroblast cell Sympathetic neuron Neuron Plasmacytoid dendritic cell Metanephric mesenchyme stem cell Epithelial cell of parathyroid gland Cardiac muscle cell Endothelial cell Duct epithelial cell Gabaergic neuron Primordial germ cell Chondrocyte Respiratory tract goblet cell Adipose macrophage Embryonic blood vessel endothelial progenitor cell Retinal rod cell Myeloid suppressor cell Endothelial cell of artery Perineuronal satellite cell Brain pericyte Schwann cell precursor Pancreatic acinar cell Epithelial cell of pancreas B cell Keratinocyte Podocyte Starburst amacrine cell Cochlea auditory hair cell Melanocyte Glutamatergic neuron Choroid plexus epithelial cell Hematopoietic stem cell Hypothalamus cell Astrocyte Spinal cord motor neuron Retina horizontal cell

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus

Mus musculus

Peripheral nervous system neuron Megakaryocyte Retinal bipolar neuron Endocardial cell Iris pigment epithelial cell Olfactory receptor cell Bladder urothelial cell Gingival epithelial cell Natural killer cell Epithelial cell of thymus Corneal epithelial cell Retinal cone cell Cranial motor neuron Splanchnic mesodermal cell Sensory neuron of dorsal root ganglion Endothelial cell of lymphatic vessel Pulmonary alveolar type 1 cell Regulatory t cell Auditory epithelial cell Kidney epithelial cell Endo-epithelial cell Intrahepatic cholangiocyte Mast cell Fibroblast Primitive erythroid progenitor Intestine goblet cell Erythroid progenitor cell Cerebral cortex gabaergic interneuron Monocyte Intestinal enteroendocrine cell Enteric neuron Pericyte Amacrine cell Notochordal cell Cajal-retzius cell Ectodermal cell Club cell Kidney collecting duct intercalated cell Mesodermal cell Myoblast Myelinating schwann cell Lateral mesodermal cell Conjunctiva goblet cell Epithelial cell of proximal tubule Ciliated cell Extraembryonic cell Neural progenitor cell Purkinje cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Kidney collecting duct principal cell Epithelial cell of thyroid gland Committed oligodendrocyte precursor Leydig cell Intermediate mesodermal cell Bistratified retinal ganglion cell Cerebral cortex endothelial cell T cell Retinal ganglion cell Pinealocyte Parasympathetic neuron Retinal pigment epithelial cell Type i cell of adrenal cortex Neural cell Osteoblast Myotube Vein endothelial cell Thalamic excitatory neuron Lens epithelial cell Brown adipocyte Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Adipocyte Olfactory ensheathing cell Central nervous system macrophage Epithelial cell Ependymal cell Hepatocyte Epithelial cell of amnion Osteoclast Oligodendrocyte precursor cell Muscle precursor cell Conventional dendritic cell Kupffer cell Pulmonary alveolar type 2 cell Brown preadipocyte Microvascular endothelial cell Microglial cell Retinal progenitor cell Lung endothelial cell Olfactory epithelial cell Photoreceptor cell Efferent neuron Activated cd4-negative, cd8-negative type i nk t cell Spiral ganglion neuron Pituitary gland cell Kidney connecting tubule epithelial cell Myofibroblast cell Sympathetic neuron Neuron Plasmacytoid dendritic cell Metanephric mesenchyme stem cell Epithelial cell of parathyroid gland Cardiac muscle cell Endothelial cell Duct epithelial cell Gabaergic neuron Primordial germ cell Chondrocyte Respiratory tract goblet cell Adipose macrophage Embryonic blood vessel endothelial progenitor cell Retinal rod cell Myeloid suppressor cell Endothelial cell of artery Perineuronal satellite cell Brain pericyte Schwann cell precursor Pancreatic acinar cell Epithelial cell of pancreas B cell Keratinocyte Podocyte Starburst amacrine cell Cochlea auditory hair cell Melanocyte Glutamatergic neuron Choroid plexus epithelial cell Hematopoietic stem cell Hypothalamus cell Astrocyte Spinal cord motor neuron Retina horizontal cell

Embryo

Theiler stage 26 Theiler stage 16 Theiler stage 13 Theiler stage 14 Theiler stage 19 Theiler stage 25 Theiler stage 23 Theiler stage 17 Theiler stage 27 Theiler stage 20 Theiler stage 22 Theiler stage 12 Theiler stage 24 Theiler stage 21 Theiler stage 15 Theiler stage 18

Normal

Female Male

Sci-rna-seq3

Nucleus