Mus musculus

Neuron

Spinocerebellar tract Dorsal horn of spinal cord Spinal cord Lumbar spinal cord

24-day-old stage Theiler stage 27 4-week-old stage 23-day-old stage 21-day-old stage Infant stage 27-day-old stage 25-day-old stage 2-week-old stage 1-week-old stage 22-day-old stage Immature stage 26-day-old stage 2-month-old stage

Normal

Female Male

Split-seq 10x 3' v1 Scrb-seq Fluidigm c1-based library preparation Drop-seq 10x 3' v2

Nucleus Cell

Mus musculus

Neutrophil Natural killer cell Tissue-resident macrophage Mast cell Cd8-positive, alpha-beta t cell Plasmacytoid dendritic cell Macrophage Regulatory t cell Monocyte-derived dendritic cell Cd4-positive, alpha-beta t cell Malignant cell B cell Monocyte Conventional dendritic cell Fibroblast Osteoclast Dendritic cell

Cutaneous melanoma

10x 5' transcription profiling

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Macula densa epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney granular cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Macula densa epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Cortex of kidney

54-year-old stage

Normal

Male

Slide-seqv2

Homo sapiens

Ciliated cell Secretory cell Basal cell

Respiratory basal cell

Adult stage

Normal

10x 3' v3

Cell

Danio rerio

Notochordal cell Notochordal sheath cell Notochordal vacuole cell Chondrocyte

Parachordal cartilage Multicellular anatomical structure Notochord

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Blood vessel endothelial cell Endothelial cell of lymphatic vessel Endothelial cell of arteriole Endothelial cell of artery Capillary endothelial cell Smooth muscle cell Mural cell Vein endothelial cell Pericyte

Intercostal muscle

Sixth decade stage Third decade stage Seventh decade stage Fourth decade stage Eighth decade stage Young adult stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Transit amplifying cell of small intestine Cell Best4+ enterocyte Stem cell Enterocyte of epithelium of small intestine Small intestine goblet cell Paneth cell of epithelium of small intestine Enteroendocrine cell of small intestine Tuft cell of small intestine M cell of gut

Small intestine

30-year-old stage

Normal

Male

10x 3' v3

Cell

Homo sapiens

Near-projecting glutamatergic cortical neuron

Dorsolateral prefrontal cortex

69-year-old stage 75-year-old stage 42-year-old stage 89-year-old stage 87-year-old stage 85-year-old stage 88-year-old stage 68-year-old stage 29-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 72-year-old stage 81-year-old stage 80 year-old and over stage 77-year-old stage 86-year-old stage 70-year-old stage 78-year-old stage 83-year-old stage

Normal Dementia

Female Male

10x multiome 10x 3' v3

Nucleus

Homo sapiens

Fibroblast

Medulla oblongata Hindbrain Cortex Midbrain Dorsal plus ventral thalamus Lower layers of the cortex Midbrain tectum Metencephalon Basal forebrain Cerebellum Brain Hypothalamus Cerebellar peduncular complex Upper layers of the cortex Hippocampal formation Pons Cerebral subcortex Occipital cortex Forebrain Head

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 16 Carnegie stage 15 Carnegie stage 18

Normal

10x 3' v3 10x 3' v2

Cell

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney granular cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Callithrix jacchus

Ependymal cell

Thalamic complex Medial dorsal nucleus of thalamus Ventral lateral nucleus of thalamus Lateral nuclear group of thalamus Caudate nucleus Anterior hypothalamic region Nucleus accumbens Ventral thalamus Dorsal thalamus Hippocampal formation Posterior hypothalamic region Lateral geniculate body Putamen

Late adult stage Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus