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Technology
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Cell
896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
5,440 cells
•
McGlade et al., 2021
Cell‐type specific analysis of physiological action of estrogen in mouse oviducts
Explore
h5ad
Mus musculus
Mus musculus
Fallopian tube secretory epithelial cell
+6
Fallopian tube secretory epithelial cell
Oviduct
Oviduct
2-month-old stage
2-month-old stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Fallopian tube secretory epithelial cell
Endothelial cell
Smooth muscle cell
Lymphocyte
Macrophage
Fallopian tube multiciliated epithelial cell
Fibroblast
Tissue
Oviduct
Developmental stage
2-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
Github:winuthayanon/estrus
GEO series:GSE164291
CELLxGENE
5,399 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Single Cell Portal
5,341 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD717) (section 214)
Corresponding registered brain section (MD717) (section 215)
Corresponding registered brain section (MD717) (section 216)
Corresponding registered brain section (MD717) (section 217)
Corresponding registered brain section (MD717) (section 218)
Corresponding registered brain section (MD717) (section 219)
CELLxGENE
5,331 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Gabaergic neuron
Gabaergic neuron
Entorhinal cortex
Entorhinal cortex
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Gabaergic neuron
Tissue
Entorhinal cortex
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GEO series:GSE147528
kampmannlab.ucsf.edu
synapse.org:#!Synapse:syn21788402/wiki/601825
HumanCellAtlas:7dcffc32-7c82-4396-9a4f-88b5579bfe8a
CELLxGENE
5,295 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
5,286 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell of endometrium
+16
Stromal cell of endometrium
Endometrium
+1
Endometrium
28-year-old stage
+2
28-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Stromal cell of endometrium
Stromal cell
Perivascular cell
Luminal endometrial multiciliated epithelial cell
Hematopoietic precursor cell
Uterine smooth muscle cell
Leukocyte
Epithelial cell
Endothelial cell of uterus
Myoepithelial cell
Glandular secretory epithelial cell
Cd4-positive, alpha-beta memory t cell
Ciliated epithelial cell
Circulating fibrocyte
Decidual cell
Fibroblast
Memory t cell
Tissue
Endometrium
Myometrium
Developmental stage
28-year-old stage
32-year-old stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-10287
GEO series:GSE111976
GEO series:GSE260658
Bgee
5,264 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Mus musculus (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Mus musculus (h5ad)
Mus musculus
Mus musculus
Early spermatid
+5
Early spermatid
Testis
Testis
9-week-old stage
9-week-old stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Mus musculus
Cell type
Early spermatid
Sertoli cell
Late spermatid
Obsolete somatic cell
Spermatocyte
Spermatogonium
Tissue
Testis
Developmental stage
9-week-old stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
5,258 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
5,218 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+31
T cell
Lung
Lung
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Neutrophil
Club cell
Natural killer cell
Endothelial cell of lymphatic vessel
Multiciliated columnar cell of tracheobronchial tree
Mature nk t cell
Cd8-positive, alpha-beta t cell
Pulmonary neuroendocrine cell
Leukocyte
Classical monocyte
Intermediate monocyte
Smooth muscle cell of the pulmonary artery
Plasmacytoid dendritic cell
Myeloid dendritic cell
Lymphocyte
Lung macrophage
Regulatory t cell
Pulmonary alveolar type 1 cell
Bronchial smooth muscle cell
Respiratory basal cell
Fibroblast of lung
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
Pulmonary interstitial fibroblast
B cell
Pericyte
Adventitial cell
Dendritic cell
Pulmonary alveolar type 2 cell
Non-classical monocyte
Tissue
Lung
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
5,215 cells
•
Alkaslasi et al., 2021
Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord
Explore
h5ad
Mus musculus
Mus musculus
Cholinergic neuron
Cholinergic neuron
Cervical spinal cord
+2
Cervical spinal cord
8-week-old stage
8-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Cholinergic neuron
Tissue
Cervical spinal cord
Thoracic spinal cord
Lumbar spinal cord
Developmental stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
CELLxGENE
5,207 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
5,200 cells
•
Yu et al., 2021
Charting human development using a multi-endodermal organ atlas and organoid models
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+9
Intestine goblet cell
Duodenum
Duodenum
50-year-old stage
+1
50-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Intestine goblet cell
Mature nk t cell
Stem cell
Enteroendocrine cell
Enterocyte
Mesenchymal cell
Precursor cell
B cell
Myeloid leukocyte
M cell of gut
Tissue
Duodenum
Developmental stage
50-year-old stage
45-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
guttuber.ethz.ch
ArrayExpress BioStudies:E-MTAB-10187
HumanCellAtlas:8ab8726d-81b9-4bd2-acc2-4d50bee786b4
DOI:10.17632/x53tts3zfr.1
ArrayExpress BioStudies:E-MTAB-10268
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