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Cell Type
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Tissue
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Disease
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Technology
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Cell
896
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
3,923 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Epithelial cell
Epithelial cell
Pleural effusion
Pleural effusion
75-year-old stage
75-year-old stage
Small cell lung carcinoma
Small cell lung carcinoma
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Epithelial cell
Tissue
Pleural effusion
Developmental stage
75-year-old stage
Disease
Small cell lung carcinoma
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
3,912 cells
•
Gu et al., 2024
Immune microniches shape intestinal Treg function
Explore
h5ad
Mus musculus
Mus musculus
Germinal center b cell
+5
Germinal center b cell
Caecum
+3
Caecum
Prime adult stage
Prime adult stage
Normal
Normal
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Mus musculus
Cell type
Germinal center b cell
B cell zone reticular cell
Igm plasmablast
Memory b cell
Plasma cell
Naive b cell
Tissue
Caecum
Lamina propria of small intestine
Small intestine peyer's patch
Mesenteric lymph node
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 5' v2
Suspension type
Cell
Related Links
Sanger Dataset:treg-gut-niches
ENA Project:PRJEB57700
Single Cell Portal
3,908 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte precursor cell
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD702) (section 281)
CELLxGENE
3,855 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+5
T cell
Limb muscle
Limb muscle
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Endothelial cell
Skeletal muscle satellite cell
Macrophage
B cell
Mesenchymal stem cell
Tissue
Limb muscle
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
3,851 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Central nervous system macrophage
+1
Central nervous system macrophage
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
37-year-old stage
+12
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Central nervous system macrophage
Microglial cell
Tissue
Cervical spinal cord white matter
Brodmann (1909) area 4
White matter of cerebellum
Developmental stage
37-year-old stage
34-year-old stage
42-year-old stage
71-year-old stage
61-year-old stage
39-year-old stage
44-year-old stage
72-year-old stage
74-year-old stage
45-year-old stage
63-year-old stage
73-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
Github:Anna-Williams/Luise_Seeker_Human_WM_Glia
HumanCellAtlas:73011a86-4755-48ac-9f70-a28903b4ad77
Single Cell Portal
3,840 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 7)
Corresponding registered brain section (MD720) (section 8)
Corresponding registered brain section (MD720) (section 9)
Corresponding registered brain section (MD721) (section 7)
Corresponding registered brain section (MD721) (section 8)
Corresponding registered brain section (MD721) (section 9)
CELLxGENE
3,834 cells
•
Pelka et al., 2021
Spatially organized multicellular immune hubs in human colorectal cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Mast cell
Mast cell
Colorectum
Colorectum
69-year-old stage
+33
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Mast cell
Tissue
Colorectum
Developmental stage
69-year-old stage
91-year-old stage
42-year-old stage
89-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
56-year-old stage
55-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
90-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
81-year-old stage
49-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
67-year-old stage
77-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
36-year-old stage
47-year-old stage
76-year-old stage
73-year-old stage
Disease
Normal
Colon adenocarcinoma
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
broad.io
GEO series:GSE178341
dbGaP Study:phs002407
HumanCellAtlas:6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd
BroadInstitute Single-Cell Portal:SCP1162/human-colon-cancer-atlas-c295#study-visualize
CELLxGENE
3,834 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Granulocyte
+5
Granulocyte
Spleen
Spleen
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Granulocyte
Natural killer cell
Cd8-positive, alpha-beta t cell
Cd4-positive, alpha-beta t cell
B cell
Proerythroblast
Tissue
Spleen
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
GEO series:GSE132042
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
3,824 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+11
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
GEO series:GSE197353
CELLxGENE
3,799 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Mature microglial cell
Mature microglial cell
Superior frontal gyrus
Superior frontal gyrus
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Mature microglial cell
Tissue
Superior frontal gyrus
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GEO series:GSE147528
kampmannlab.ucsf.edu
HumanCellAtlas:7dcffc32-7c82-4396-9a4f-88b5579bfe8a
synapse.org:#!Synapse:syn21788402/wiki/601825
CELLxGENE
3,799 cells
•
Litviňuková et al., 2020
Cells of the adult human heart
Explore
h5ad
Homo sapiens
Homo sapiens
Epicardial adipocyte
Epicardial adipocyte
Heart right ventricle
+5
Heart right ventricle
Sixth decade stage
+3
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Epicardial adipocyte
Tissue
Heart right ventricle
Right cardiac atrium
Apex of heart
Heart left ventricle
Left cardiac atrium
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
UCSC Cell Browser:heart-cell-atlas
ENA Project:ERP123138
support.10xgenomics.com
UCSC Genome Browser:hgTrackUi?db=hg38&g=heartCellAtlas&position=default
Teichmann lab
Github:cartal/HCA_Heart
heartcellatlas.org
HumanCellAtlas:ad98d3cd-26fb-4ee3-99c9-8a2ab085e737
CELLxGENE
3,797 cells
•
Wang et al., 2019
Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine
Explore
h5ad
Homo sapiens
Homo sapiens
Stem cell
+6
Stem cell
Rectum
Rectum
66-year-old stage
+1
66-year-old stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Stem cell
Transit amplifying cell of colon
Paneth cell of colon
Colon goblet cell
Progenitor cell
Colonocyte
Enteroendocrine cell of colon
Tissue
Rectum
Developmental stage
66-year-old stage
50-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
Single Cell Expression Atlas Experiment:E-GEOD-125970
UCSC Cell Browser:human-intestine
GEO series:GSE125970
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