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Cell Type
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Tissue
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Disease
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Technology
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Cell
896
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
2,574 cells
•
Moorman et al., 2025
Author Correction: Progressive plasticity during colorectal cancer metastasis
Explore
h5ad
Homo sapiens
Homo sapiens
Malignant cell
Malignant cell
Liver
+1
Liver
50-year-old stage
50-year-old stage
Colorectal cancer
Colorectal cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Malignant cell
Tissue
Liver
Sigmoid colon
Developmental stage
50-year-old stage
Disease
Colorectal cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:dpeerlab/progressive-plasticity-crc-metastasis.git
Single Cell Portal
2,573 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Astrocyte of the cerebellum
Brain microvascular endothelial cell
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD719) (section 197)
Corresponding registered brain section (MD719) (section 198)
CELLxGENE
2,567 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
GEO series:GSE197353
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
CELLxGENE
2,552 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of connective tissue of prostate
Fibroblast of connective tissue of prostate
Prostate gland
Prostate gland
69-year-old stage
+14
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Fibroblast of connective tissue of prostate
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
59-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
CELLxGENE
2,544 cells
•
Enge et al., 2017
Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns
Explore
h5ad
Homo sapiens
Homo sapiens
Type b pancreatic cell
+5
Type b pancreatic cell
Islet of langerhans
Islet of langerhans
21-year-old stage
+7
21-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Type b pancreatic cell
Mesenchymal cell
Acinar cell
Type d enteroendocrine cell
Type a enteroendocrine cell
Pancreatic ductal cell
Tissue
Islet of langerhans
Developmental stage
21-year-old stage
54-year-old stage
44-year-old stage
38-year-old stage
1-month-old stage
22-year-old stage
5-year-old stage
6-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE81547
UCSC Cell Browser:adultPancreas
cirm.ucsc.edu
Single Cell Expression Atlas Experiment:E-GEOD-81547
HumanCellAtlas:cddab57b-6868-4be4-806f-395ed9dd635a
CELLxGENE
2,526 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Neutrophil
+30
Neutrophil
Hypothalamus-pituitary axis
Hypothalamus-pituitary axis
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
Neutrophil
Erythroid progenitor cell
Oligodendrocyte precursor cell
Oligodendrocyte
Neuroendocrine cell
Endothelial cell of sinusoid
Hematopoietic precursor cell
Mammotroph
Erythroid lineage cell
Capillary endothelial cell
Plasmacytoid dendritic cell
Megakaryocyte progenitor cell
Lymphocyte
Ependymal cell
Macrophage
Corticotroph
Gonadtroph
Leptomeningeal cell
Plasma cell
B cell
Pericyte
Granulocyte monocyte progenitor cell
Monocyte
Vascular associated smooth muscle cell
Astrocyte
Basophil
Thyrotroph
Conventional dendritic cell
Fibroblast
Gabaergic neuron
Somatotroph
Tissue
Hypothalamus-pituitary axis
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
CELLxGENE
2,489 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+6
Neutrophil
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Mature nk t cell
Mast cell
Ionocyte
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Mendeley Data Dataset:fm7v43jrbk/2
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
CELLxGENE
2,487 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+7
Neutrophil
Respiratory airway
Respiratory airway
49-year-old stage
49-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Mast cell
Ionocyte
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
49-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
Mendeley Data Dataset:fm7v43jrbk/2
CELLxGENE
2,477 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Cardiac valve cell
+15
Cardiac valve cell
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Cardiac valve cell
Spinal cord interneuron
Premigratory neural crest cell
Paraxial cell
Notochordal cell
Neuroplacodal cell
Neurectodermal cell
Hemangioblast
Mesodermal cell
Gut endothelial cell
Primitive red blood cell
Splanchnic mesodermal cell
Surface ectodermal cell
Midbrain dopaminergic neuron
Endodermal cell
Anterior visceral endoderm cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE197353
figshare.com
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
Chen Lab
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
CELLxGENE
2,432 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Bladder urothelial cell
+1
Bladder urothelial cell
Bladder lumen
Bladder lumen
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
Bladder urothelial cell
Bladder cell
Tissue
Bladder lumen
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
2,410 cells
•
Chen et al., 2025
Determinants of sensitivity to HER2-targeted antibody drug conjugates in urothelial cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Neoplastic cell
Neoplastic cell
Urinary bladder
Urinary bladder
Adult stage
Adult stage
Urinary bladder cancer
Urinary bladder cancer
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neoplastic cell
Tissue
Urinary bladder
Developmental stage
Adult stage
Disease
Urinary bladder cancer
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
CELLxGENE
2,346 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+4
Natural killer cell
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Gamma-delta t cell
Alpha-beta t cell
Mature b cell
Plasma cell
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
Github:tallulandrews/Liver_sc_sn_paper_scripts
GEO series:GSE185477
HumanCellAtlas:8a666b76-daaf-4b1f-9414-e4807a1d1e8b
macparlandlab.shinyapps.io
protocols.io:human-liver-caudate-lobe-dissociation-for-scrna-se-q26g77j1gwz1/v2
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