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Cell Type
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Tissue
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Disease
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Technology
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Cell
896
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
2,303 cells
•
Wiedemann et al., 2023
Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
Explore
h5ad
Homo sapiens
Homo sapiens
Skin fibroblast
Skin fibroblast
Skin of body
+1
Skin of body
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Skin fibroblast
Tissue
Skin of body
Dermis
Developmental stage
65-year-old stage
39-year-old stage
56-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
skingenes.org
GEO series:GSE202352
HumanCellAtlas:da74b507-60ee-4dd1-bd02-807bb051a337
CELLxGENE
2,276 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+7
T cell
Breast
Breast
52-year-old stage
52-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Mature nk t cell
Mast cell
Macrophage
Plasma cell
Malignant cell
Fibroblast
Tissue
Breast
Developmental stage
52-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
2,223 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+6
T cell
Brown adipose tissue
Brown adipose tissue
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Natural killer cell
Endothelial cell
Epithelial cell
Myeloid cell
Mesenchymal stem cell of adipose tissue
B cell
Tissue
Brown adipose tissue
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CELLxGENE
2,199 cells
•
Fawkner-Corbett et al., 2021
Spatiotemporal analysis of human intestinal development at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+10
Natural killer cell
Hindgut
+2
Hindgut
19th week post-fertilization stage
+11
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Mast cell
Leukocyte
Plasmacytoid dendritic cell
Precursor b cell
Group 3 innate lymphoid cell
Macrophage
B cell
Naive t cell
Monocyte
Dendritic cell
Tissue
Hindgut
Ileum
Colon
Developmental stage
19th week post-fertilization stage
21st week post-fertilization stage
23rd week post-fertilization stage
13th week post-fertilization stage
14th week post-fertilization stage
20th week post-fertilization stage
17th week post-fertilization stage
16th week post-fertilization stage
10th week post-fertilization stage
18th week post-fertilization stage
Carnegie stage 22
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE158328
simmonslab.shinyapps.io
Mendeley Data Dataset:gncg57p5x9/2
dropbox.com
GEO series:GSE158702
HumanCellAtlas:fa3f460f-4fb9-4ced-b548-8ba6a8ecae3f
Single Cell Portal
2,151 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+3
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Brain microvascular endothelial cell
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD711) (section 121)
Corresponding registered brain section (MD711) (section 122)
Corresponding registered brain section (MD711) (section 123)
Corresponding registered brain section (MD711) (section 124)
Corresponding registered brain section (MD711) (section 125)
Corresponding registered brain section (MD711) (section 126)
CELLxGENE
2,126 cells
•
Muraro et al., 2016
A Single-Cell Transcriptome Atlas of the Human Pancreas
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+9
Endothelial cell
Pancreas
Pancreas
54-year-old stage
+3
54-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq2
Cel-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Pancreatic acinar cell
Pancreatic pp cell
Pancreatic endocrine cell
Pancreatic a cell
Pancreatic d cell
Type b pancreatic cell
Mesenchymal cell
Pancreatic epsilon cell
Pancreatic ductal cell
Tissue
Pancreas
Developmental stage
54-year-old stage
48-year-old stage
23-year-old stage
59-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq2
Suspension type
Cell
Related Links
GEO series:GSE85241
HumanCellAtlas:894ae6ac-5b48-41a8-a72f-315a9b60a62e
van Oudenaarden lab
CELLxGENE
2,113 cells
•
Henry et al., 2018
A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast of connective tissue of prostate
+1
Fibroblast of connective tissue of prostate
Transition zone of prostate
+1
Transition zone of prostate
29-year-old stage
+1
29-year-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Fibroblast of connective tissue of prostate
Smooth muscle cell of prostate
Tissue
Transition zone of prostate
Peripheral zone of prostate
Developmental stage
29-year-old stage
31-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
DOI:10.25548/W-R8CM
GEO series:GSE117403
strandlab.net
git.biohpc.swmed.edu
HumanCellAtlas:53c53cd4-8127-4e12-bc7f-8fe1610a715c
GEO series:GSE120716
UCSC Cell Browser:prostate-prostatic-urethra
CELLxGENE
2,094 cells
•
Santo et al., 2025
Exploring the utility of snRNA-seq in profiling human bladder tissue: A comprehensive comparison with scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Urinary bladder
Urinary bladder
21-year-old stage
21-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
T cell
Granulocyte
Mature nk t cell
Mast cell
Macrophage
Plasma cell
B cell
Monocyte
Dendritic cell
Tissue
Urinary bladder
Developmental stage
21-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
Github:basanto/Human_Bladder_scRNA-seq_vs_snRNA-seq
GEO series:GSE267964
CELLxGENE
2,075 cells
•
Xu et al., 2022
Smoking modulates different secretory subpopulations expressing SARS-CoV-2 entry genes in the nasal and bronchial airways
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+13
T cell
Bronchial mucosa
Bronchial mucosa
69-year-old stage
+12
69-year-old stage
Normal
Normal
Female
+1
Female
Cel-seq2
Cel-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Club cell
Natural killer cell
Lung secretory cell
Bronchial goblet cell
Multiciliated epithelial cell of the bronchus
Mast cell
Pulmonary ionocyte
Respiratory tract epithelial cell
Deuterosomal cell
Myeloid cell
Respiratory tract suprabasal cell
Dendritic cell
Basal cell of epithelium of bronchus
Tissue
Bronchial mucosa
Developmental stage
69-year-old stage
65-year-old stage
87-year-old stage
71-year-old stage
51-year-old stage
74-year-old stage
58-year-old stage
67-year-old stage
64-year-old stage
62-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Cel-seq2
Suspension type
Cell
Related Links
GEO series:GSE210695
CELLxGENE
2,069 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
2,065 cells
•
Szabo et al., 2021
Longitudinal profiling of respiratory and systemic immune responses reveals myeloid cell-driven lung inflammation in severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+7
Neutrophil
Respiratory airway
Respiratory airway
74-year-old stage
74-year-old stage
Covid-19
Covid-19
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Erythrocyte
Mature nk t cell
Mast cell
Platelet
Epithelial cell
Myeloid cell
B cell
Tissue
Respiratory airway
Developmental stage
74-year-old stage
Disease
Covid-19
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:simslab/cluster_diffex2018
COVID-19 cell atlas
Mendeley Data Dataset:fm7v43jrbk/2
CELLxGENE
2,029 cells
•
Isola et al., 2024
A single-cell atlas of the aging mouse ovary
Explore
h5ad
Mus musculus
Mus musculus
Natural killer cell
+10
Natural killer cell
Ovary
Ovary
3-month-old stage
+1
3-month-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Natural killer cell
Leukocyte
Lymphocyte
T-helper 17 cell
Macrophage
Innate lymphoid cell
Cd4-positive, alpha-beta t cell
B cell
Myeloid leukocyte
Monocyte
Dendritic cell
Tissue
Ovary
Developmental stage
3-month-old stage
9-month-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE232309
Github:StoutLab/OvarianAgingAtlas
omrf.shinyapps.io
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