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Technology
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Cell
896
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
1,971 cells
•
Lu et al., 2023
High‐resolution single‐cell transcriptomic survey of cardiomyocytes from patients with hypertrophic cardiomyopathy
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac muscle cell
Cardiac muscle cell
Interventricular septum
Interventricular septum
Sixth decade stage
+3
Sixth decade stage
Normal
+1
Normal
Female
+1
Female
Modified strt-seq
Modified strt-seq
Cell
Cell
Organism
Homo sapiens
Cell type
Cardiac muscle cell
Tissue
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Fourth decade stage
Disease
Normal
Hypertrophic cardiomyopathy
Sex
Female
Male
Technology
Modified strt-seq
Suspension type
Cell
Related Links
ngdc.cncb.ac.cn
CELLxGENE
1,887 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Intestinal crypt stem cell
+4
Intestinal crypt stem cell
Large intestine
Large intestine
20-month-old stage and over
20-month-old stage and over
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Intestinal crypt stem cell
Hematopoietic stem cell
Large intestine goblet cell
Enterocyte of epithelium of large intestine
Epithelial cell of large intestine
Tissue
Large intestine
Developmental stage
20-month-old stage and over
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
GEO series:GSE132042
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
1,877 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
69-year-old stage
+20
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
69-year-old stage
75-year-old stage
42-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
77-year-old stage
86-year-old stage
70-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
AWS Open Data:allen-sea-ad-atlas
Alzheimer's Disease Research Center
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
Adult Changes in Thought Study
AD knowledge portal:syn26223298
CELLxGENE
1,875 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Pvalb chandelier gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pvalb chandelier gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
CELLxGENE
1,875 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Retina horizontal cell
Retina horizontal cell
Retina
Retina
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retina horizontal cell
Tissue
Retina
Developmental stage
65-year-old stage
77-year-old stage
70-year-old stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE135133
HumanCellAtlas:e090445c-6971-4212-bc5f-ae4ec3914102
BroadInstitute Single-Cell Portal:SCP484/nucseq-from-human-control-eyes-scrnaseq
CELLxGENE
1,861 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Centrilobular region hepatocyte
+2
Centrilobular region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Centrilobular region hepatocyte
Cholangiocyte
Progenitor cell
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
Github:tallulandrews/Liver_sc_sn_paper_scripts
GEO series:GSE185477
HumanCellAtlas:8a666b76-daaf-4b1f-9414-e4807a1d1e8b
protocols.io:human-liver-caudate-lobe-dissociation-for-scrna-se-q26g77j1gwz1/v2
macparlandlab.shinyapps.io
CELLxGENE
1,858 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+5
T cell
Diaphragm
Diaphragm
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Endothelial cell
Skeletal muscle satellite cell
Macrophage
B cell
Mesenchymal stem cell
Tissue
Diaphragm
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
CZ BioHub Portal:tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Github:czbiohub/tabula-muris-senis
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CELLxGENE
1,837 cells
•
Nguyen et al., 2021
Single-nucleus transcriptomic analysis of human dorsal root ganglion neurons
Explore
h5ad
Homo sapiens
Homo sapiens
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
34-year-old stage
+3
34-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
34-year-old stage
55-year-old stage
35-year-old stage
36-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
GEO series:GSE168243
pmc.ncbi.nlm.nih.gov
CELLxGENE
1,833 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+9
T cell
Kidney
Kidney
3-month-old stage
+2
3-month-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Kidney collecting duct epithelial cell
Kidney interstitial fibroblast
Epithelial cell of proximal tubule
Macrophage
Fenestrated endothelial cell
Kidney collecting duct principal cell
Mesangial cell
B cell
Kidney loop of henle ascending limb epithelial cell
Tissue
Kidney
Developmental stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
Single Cell Portal
1,825 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Brain ischemia
+1
Brain ischemia
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte precursor cell
Tissue
Developmental stage
Disease
Brain ischemia
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
1,790 cells
•
McGlade et al., 2021
Cell‐type specific analysis of physiological action of estrogen in mouse oviducts
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+6
Blood vessel endothelial cell
Fallopian tube
Fallopian tube
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Cell
Fallopian tube secretory epithelial cell
Endothelial cell
Lymphocyte
Macrophage
Myeloid leukocyte
Tissue
Fallopian tube
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE164291
Github:winuthayanon/estrus
CELLxGENE
1,789 cells
•
Govek et al., 2022
Combined single-cell RNA-seq profiling and enhancer editing reveals critical spatiotemporal controls over thalamic nuclei formation in the murine embryo
Explore
h5ad
Mus musculus
Mus musculus
Gabaergic neuron
+1
Gabaergic neuron
Diencephalon
Diencephalon
Theiler stage 20
Theiler stage 20
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Gabaergic neuron
Neural progenitor cell
Tissue
Diencephalon
Developmental stage
Theiler stage 20
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
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