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Technology
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896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
ASAP
607 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Mechanosensory neuron of leg chordotonal organ
+6
Mechanosensory neuron of leg chordotonal organ
Leg
Leg
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Mechanosensory neuron of leg chordotonal organ
Gustatory receptor neuron
Hemocyte
Epithelial cell
Muscle cell
Mechanosensory neuron
Sensory neuron
Tissue
Leg
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
ASAP
594 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Midgut large flat cell
+9
Midgut large flat cell
Gut
Gut
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Midgut large flat cell
Enteroendocrine cell
Adult midgut enterocyte
Copper cell
Muscle cell
Enterocyte of anterior adult midgut epithelium
Intestinal stem cell
Enterocyte of posterior adult midgut epithelium
Enteroblast
Adult differentiating enterocyte
Tissue
Gut
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
CELLxGENE
582 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Cerebral cortex endothelial cell
Cerebral cortex endothelial cell
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Cerebral cortex endothelial cell
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Single Cell Portal
572 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+2
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Granule cell
Purkinje cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
CELLxGENE
565 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Liver
Liver
29-year-old stage
29-year-old stage
Breast cancer
Breast cancer
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Hepatocyte
Endothelial cell
Macrophage
Malignant cell
Monocyte
Fibroblast
Tissue
Liver
Developmental stage
29-year-old stage
Disease
Breast cancer
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
563 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L5 extratelencephalic projecting glutamatergic cortical neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
ASAP
534 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Hemocyte
+5
Hemocyte
Oenocyte
Oenocyte
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Hemocyte
Adult enterocyte
Epithelial cell
Muscle cell
Adult neuron
Adult oenocyte
Tissue
Oenocyte
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
Single Cell Portal
526 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+2
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Brain microvascular endothelial cell
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD710) (section 277)
Corresponding registered brain section (MD710) (section 278)
CELLxGENE
499 cells
•
Sampath Kumar et al., 2023
Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis
Explore
h5ad
Mus musculus
Mus musculus
Spinal cord interneuron
+1
Spinal cord interneuron
Embryo
Embryo
Theiler stage 14
Theiler stage 14
Normal
Normal
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Spinal cord interneuron
Paraxial cell
Tissue
Embryo
Developmental stage
Theiler stage 14
Disease
Normal
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
Chen Lab
figshare.com
FigShare Dataset:E8_5_Embryo2_h5ad/21695849/1
FigShare Dataset:E9_0_Embryo_h5ad/21695879/1
GEO series:GSE197353
ASAP
494 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult malpighian tubule principal cell of initial segment
+6
Adult malpighian tubule principal cell of initial segment
Malpighian tubule
Malpighian tubule
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Adult malpighian tubule principal cell of initial segment
Adult malpighian tubule principal cell
Adult renal stem cell
Adult malpighian tubule principal cell of lower segment
Adult malpighian tubule principal cell of lower ureter
Adult malpighian tubule bar-shaped cell of initial segment
Adult malpighian tubule stellate cell of main segment
Tissue
Malpighian tubule
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
CELLxGENE
489 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
T cell
+14
T cell
Trachea
Trachea
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Microcebus murinus
Cell type
T cell
Neutrophil
Ciliated cell
Endothelial cell of lymphatic vessel
Secretory cell
Endothelial cell
Basal cell of epithelium of trachea
Neuroendocrine cell
Plasmacytoid dendritic cell
Lymphocyte
Myeloid cell
Vascular associated smooth muscle cell
Fibroblast
Brush cell of trachea
Chondrocyte
Tissue
Trachea
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Single Cell Portal
467 cells
Explore
Mus musculus
Mus musculus
Granule cell
+1
Granule cell
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Granule cell
Purkinje cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
1
2
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