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Technology
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Cell
896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
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Most cells
Fewest cells
2346
datasets
ASAP
464 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Adult abdominal pericardial cell
+5
Adult abdominal pericardial cell
Heart
Heart
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Adult abdominal pericardial cell
Crystal cell
Hemocyte
Epithelial cell
Muscle cell
Adult oenocyte
Tissue
Heart
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
CELLxGENE
395 cells
•
Orozco et al., 2020
Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration
Explore
h5ad
Homo sapiens
Homo sapiens
Myeloid cell
Myeloid cell
Retina
Retina
65-year-old stage
+3
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Myeloid cell
Tissue
Retina
Developmental stage
65-year-old stage
77-year-old stage
70-year-old stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE135133
BroadInstitute Single-Cell Portal:SCP484/nucseq-from-human-control-eyes-scrnaseq
HumanCellAtlas:e090445c-6971-4212-bc5f-ae4ec3914102
CELLxGENE
385 cells
•
Berg et al., 2021
Human neocortical expansion involves glutamatergic neuron diversification
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
Glutamatergic neuron
Parietal cortex
+3
Parietal cortex
66-year-old stage
+42
66-year-old stage
Epilepsy
+3
Epilepsy
Female
+1
Female
Patch-seq
Patch-seq
Cell
Cell
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Tissue
Parietal cortex
Temporal cortex
Frontal cortex
Occipital cortex
Developmental stage
66-year-old stage
69-year-old stage
21-year-old stage
34-year-old stage
65-year-old stage
42-year-old stage
61-year-old stage
52-year-old stage
68-year-old stage
48-year-old stage
44-year-old stage
38-year-old stage
55-year-old stage
50-year-old stage
28-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
49-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
25-year-old stage
67-year-old stage
32-year-old stage
33-year-old stage
45-year-old stage
41-year-old stage
46-year-old stage
60-year-old stage
18-year-old stage
31-year-old stage
36-year-old stage
22-year-old stage
19-year-old stage
63-year-old stage
20-year-old stage
47-year-old stage
73-year-old stage
27-year-old stage
40-year-old stage
Disease
Epilepsy
Hydrocephalus
Encephalomyelitis
Brain neoplasm
Sex
Female
Male
Technology
Patch-seq
Suspension type
Cell
Related Links
Github:alleninstitute/mies
portal.brain-map.org
Github:AllenInstitute/patchseq_human_L23
CELLxGENE
363 cells
•
King et al., 2021
Single-cell analysis of human B cell maturation predicts how antibody class switching shapes selection dynamics
Explore
h5ad
Homo sapiens
Homo sapiens
Follicular dendritic cell
+4
Follicular dendritic cell
Tonsil
Tonsil
9-year-old stage
+3
9-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Follicular dendritic cell
Plasmacytoid dendritic cell
Macrophage
Myeloid cell
Conventional dendritic cell
Tissue
Tonsil
Developmental stage
9-year-old stage
3-year-old stage
5-year-old stage
6-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
HumanCellAtlas:24d0dbbc-54eb-4904-8141-934d26f1c936
tonsilimmune.org
ArrayExpress BioStudies:E-MTAB-8999
ArrayExpress BioStudies:E-MTAB-9003
ArrayExpress BioStudies:E-MTAB-9005
Single Cell Portal
343 cells
Explore
Homo sapiens
Homo sapiens
T cell
T cell
Hiv infectious disease
Hiv infectious disease
Smart-seq2
Smart-seq2
Organism
Homo sapiens
Cell type
T cell
Tissue
Developmental stage
Disease
Hiv infectious disease
Sex
Technology
Smart-seq2
Suspension type
CELLxGENE
301 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
knowledge.brain-map.org
Allen Brain Map:classes/multimodal-characterization
NeMo archive:dat-p3eei0g
Github:AllenInstitute/human_variation
Allen Brain Map Atlases:rnaseq/human-mtg-10x_sea-ad
CELLxGENE
268 cells
•
Apostolov et al., 2024
Profiling of epithelial functional states and fibroblast phenotypes in hormone therapy-naïve localised prostate cancer
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+4
T cell
Prostate gland
Prostate gland
69-year-old stage
+13
69-year-old stage
Prostatic acinar adenocarcinoma
Prostatic acinar adenocarcinoma
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Luminal cell of prostate epithelium
Myeloid cell
Basal cell of prostate epithelium
Club-like cell of the urethral epithelium
Tissue
Prostate gland
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
72-year-old stage
64-year-old stage
45-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Prostatic acinar adenocarcinoma
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE145843
ASAP
263 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Hemocyte
+3
Hemocyte
Haltere
Haltere
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
Smart-seq2
Smart-seq2
Organism
Drosophila melanogaster
Cell type
Hemocyte
Epithelial cell
Muscle cell
Adult glial cell
Tissue
Haltere
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
Suspension type
CELLxGENE
231 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Fast muscle cell
+12
Fast muscle cell
Diaphragm
Diaphragm
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Fast muscle cell
Neutrophil
Endothelial cell of lymphatic vessel
Tendon cell
Erythroid lineage cell
Capillary endothelial cell
Lymphocyte
Macrophage
Vein endothelial cell
Pericyte
Skeletal muscle satellite stem cell
Mesenchymal stem cell
Basophil
Tissue
Diaphragm
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
UCSC Cell Browser:tabula-microcebus
app.globus.org
Single Cell Portal
206 cells
Explore
Mus musculus
Mus musculus
Neuron of the dorsal spinal cord
Neuron of the dorsal spinal cord
Normal
+1
Normal
Smart-seq2
Smart-seq2
Organism
Mus musculus
Cell type
Neuron of the dorsal spinal cord
Tissue
Developmental stage
Disease
Normal
Neuropathy, painful
Sex
Technology
Smart-seq2
Suspension type
CELLxGENE
146 cells
•
Andrews et al., 2021
Single‐Cell, Single‐Nucleus, and Spatial RNA Sequencing of the Human Liver Identifies Cholangiocyte and Mesenchymal Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Mature b cell
+1
Mature b cell
Caudate lobe of liver
Caudate lobe of liver
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Mature b cell
Plasma cell
Tissue
Caudate lobe of liver
Developmental stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
Github:tallulandrews/Liver_sc_sn_paper_scripts
GEO series:GSE185477
HumanCellAtlas:8a666b76-daaf-4b1f-9414-e4807a1d1e8b
macparlandlab.shinyapps.io
protocols.io:human-liver-caudate-lobe-dissociation-for-scrna-se-q26g77j1gwz1/v2
Bgee
118 cells
•
Deng et al., 2014
Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells
Explore
scRNA-Seq full-length processed expression values per cell population in Mus musculus (tsv.gz)
scRNA-Seq full-length H5AD data per cell in Mus musculus (h5ad)
Mus musculus
Mus musculus
Blastoderm cell
+1
Blastoderm cell
Morula
+1
Morula
Theiler stage 03
+1
Theiler stage 03
Normal
Normal
Male
Male
Smart-seq2
Smart-seq2
Organism
Mus musculus
Cell type
Blastoderm cell
Embryonic cell (metazoa)
Tissue
Morula
Blastocyst
Developmental stage
Theiler stage 03
Theiler stage 05
Disease
Normal
Sex
Male
Technology
Smart-seq2
Suspension type
Related Links
SRA Project:SRP020490
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