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Disease
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Technology
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Cell
896
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
20,680 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
Basal cell of epidermis
+2
Basal cell of epidermis
Tongue
Tongue
4-week-old stage
+3
4-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Basal cell of epidermis
Keratinocyte
Langerhans cell
Tissue
Tongue
Developmental stage
4-week-old stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE132042
FigShare Dataset:Processed_files_to_use_with_scanpy_/8273102/2
CZ BioHub Portal:tabula-muris-senis
Github:czbiohub/tabula-muris-senis
protocols.io:smartseq2-for-htp-generation-of-facs-sorted-single-2uwgexe
CELLxGENE
20,676 cells
•
Fan et al., 2019
Single-cell reconstruction of follicular remodeling in the human adult ovary
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Ovary
Ovary
Adult stage
Adult stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Granulosa cell
Natural killer cell
Endothelial cell
Stromal cell of ovary
Smooth muscle cell
Innate lymphoid cell
B cell
Theca cell
Tissue
Ovary
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
UCSC Cell Browser:ovarian-follicle-recon
HumanCellAtlas:faeedcb0-e046-4be7-b1ad-80a3eeabb066
Github:johnmous/singleCell
GEO series:GSE118127
CELLxGENE
20,645 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Luminal endometrial multiciliated epithelial cell
+4
Luminal endometrial multiciliated epithelial cell
Endometrium
+1
Endometrium
37-year-old stage
+7
37-year-old stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Luminal endometrial multiciliated epithelial cell
Epithelial cell
Myoepithelial cell
Glandular secretory epithelial cell
Memory t cell
Tissue
Endometrium
Myometrium
Developmental stage
37-year-old stage
26-year-old stage
29-year-old stage
28-year-old stage
23-year-old stage
32-year-old stage
31-year-old stage
Young adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE260658
ArrayExpress BioStudies:E-MTAB-10287
GEO series:GSE111976
CELLxGENE
20,611 cells
•
Kedlian et al., 2024
Human skeletal muscle aging atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Non-myelinating schwann cell
+5
Non-myelinating schwann cell
Intercostal muscle
Intercostal muscle
Sixth decade stage
+5
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Non-myelinating schwann cell
Tendon cell
Fibroblast of the aortic adventitia
Perineurial cell
Fibroblast
Myelinating schwann cell
Tissue
Intercostal muscle
Developmental stage
Sixth decade stage
Third decade stage
Seventh decade stage
Fourth decade stage
Eighth decade stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
muscleageingcellatlas.org
ArrayExpress BioStudies:E-MTAB-13874
CELLxGENE
20,587 cells
•
Li et al., 2023
Integrated multi-omics single cell atlas of the human retina
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+2
Retinal ganglion cell
Peripheral region of retina
+3
Peripheral region of retina
66-year-old stage
+35
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off parasol ganglion cell
On parasol ganglion cell
Tissue
Peripheral region of retina
Macula lutea proper
Fovea centralis
Macula lutea
Developmental stage
66-year-old stage
69-year-old stage
75-year-old stage
21-year-old stage
34-year-old stage
65-year-old stage
43-year-old stage
71-year-old stage
85-year-old stage
88-year-old stage
52-year-old stage
68-year-old stage
30-year-old stage
84-year-old stage
72-year-old stage
81-year-old stage
74-year-old stage
67-year-old stage
Late adult stage
90 year-old and over stage
32-year-old stage
77-year-old stage
64-year-old stage
62-year-old stage
86-year-old stage
60-year-old stage
78-year-old stage
60-79 year-old stage
63-year-old stage
Eighth decade stage
47-year-old stage
76-year-old stage
73-year-old stage
83-year-old stage
Prime adult stage
27-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:RCHENLAB/HRCA_reproducibility
CELLxGENE
20,571 cells
•
Tran et al., 2021
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+9
Oligodendrocyte precursor cell
Nucleus accumbens
Nucleus accumbens
42-year-old stage
+7
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Direct pathway medium spiny neuron
Oligodendrocyte
Immature microglial cell
Macrophage
Microglial cell
Gabaergic interneuron
Indirect pathway medium spiny neuron
Pvalb gabaergic interneuron
Astrocyte
Tissue
Nucleus accumbens
Developmental stage
42-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
51-year-old stage
59-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
research.libd.org
Github:LieberInstitute/10xPilot_snRNAseq-human
CELLxGENE
20,568 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
20,556 cells
•
Garcia-Alonso et al., 2022
Single-cell roadmap of human gonadal development
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+17
Neutrophil
Gonad
Gonad
Carnegie stage 19
+16
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Natural killer cell
Pro-b cell
Mast cell
Plasmacytoid dendritic cell
Precursor b cell
Macrophage
Immature innate lymphoid cell
Common myeloid progenitor
Neutrophil progenitor cell
Megakaryocyte
B cell
Granulocyte monocyte progenitor cell
Megakaryocyte-erythroid progenitor cell
Fraction a pre-pro b cell
Monocyte
Early t lineage precursor
Conventional dendritic cell
Tissue
Gonad
Developmental stage
Carnegie stage 19
19th week post-fertilization stage
21st week post-fertilization stage
13th week post-fertilization stage
14th week post-fertilization stage
15th week post-fertilization stage
17th week post-fertilization stage
12th week post-fertilization stage
16th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 23
10th week post-fertilization stage
Carnegie stage 21
18th week post-fertilization stage
Carnegie stage 17
Carnegie stage 18
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-10551
ArrayExpress BioStudies:E-MTAB-11480
reproductivecellatlas.org
ventolab.org
CELLxGENE
20,515 cells
•
Madissoon et al., 2022
A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
Explore
h5ad
Homo sapiens
Homo sapiens
Non-myelinating schwann cell
+8
Non-myelinating schwann cell
Bronchus
+4
Bronchus
66-year-old stage
+8
66-year-old stage
Normal
Normal
Female
+1
Female
10x 5' transcription profiling
+2
10x 5' transcription profiling
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Non-myelinating schwann cell
Bronchus fibroblast of lung
Fibroblast of lung
Lung perichondrial fibroblast
Mesothelial cell
Adventitial cell
Myofibroblast cell
Fibroblast
Myelinating schwann cell
Tissue
Bronchus
Lung
Trachea
Upper lobe of left lung
Lower lobe of left lung
Developmental stage
66-year-old stage
75-year-old stage
Sixth decade stage
29-year-old stage
35-year-old stage
Seventh decade stage
58-year-old stage
59-year-old stage
64-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' transcription profiling
10x 3' v3
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
ENA Project:PRJEB52292
HumanCellAtlas:957261f7-2bd6-4358-a6ed-24ee080d5cfc
ArrayExpress BioStudies:E-MTAB-11640
Bioimage Archive:S-BIAD570
Sanger Dataset:5locationslung
Single Cell Portal
20,513 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD721) (section 223)
Corresponding registered brain section (MD721) (section 224)
Corresponding registered brain section (MD721) (section 225)
CELLxGENE
20,509 cells
•
Zhang et al., 2021
Single-cell analyses of renal cell cancers reveal insights into tumor microenvironment, cell of origin, and therapy response
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Kidney
Kidney
66-year-old stage
+5
66-year-old stage
Clear cell renal carcinoma
Clear cell renal carcinoma
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Mast cell
Macrophage
Plasma cell
B cell
Pericyte
Abnormal cell
Vascular associated smooth muscle cell
Tissue
Kidney
Developmental stage
66-year-old stage
69-year-old stage
71-year-old stage
74-year-old stage
70-year-old stage
76-year-old stage
Disease
Clear cell renal carcinoma
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
HumanCellAtlas:7c599029-7a3c-4b5c-8e79-e72c9a9a65fe
CELLxGENE
20,475 cells
•
Lim et al., 2023
Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease
Explore
h5ad
Homo sapiens
Homo sapiens
Fetal pre-type ii pulmonary alveolar epithelial cell
+7
Fetal pre-type ii pulmonary alveolar epithelial cell
Lung epithelium
Lung epithelium
Sixth lmp month stage
Sixth lmp month stage
Normal
Normal
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Fetal pre-type ii pulmonary alveolar epithelial cell
Cycling pulmonary alveolar type 2 cell
Pulmonary neuroendocrine cell
Pulmonary alveolar type 1 cell
Respiratory basal cell
Neuroendocrine cell of epithelium of lobar bronchus
Epithelial cell of lung
Pulmonary alveolar type 2 cell
Tissue
Lung epithelium
Developmental stage
Sixth lmp month stage
Disease
Normal
Sex
Technology
10x 5' v1
Suspension type
Cell
Related Links
Sanger Dataset:fetal-lung-organoid
ebi.ac.uk
Github:Peng-He-Lab/2023-Late-tip-organoid
ENA Project:ERP135437
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