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43
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40
Cellxgene
2,045
Single cell portal
176
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2304
datasets
CELLxGENE
1,462,702 cells
•
Ren et al., 2021
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Secretory cell
+17
Secretory cell
Lung
+2
Lung
54-year-old stage
+63
54-year-old stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Secretory cell
Cd14-positive, cd16-positive monocyte
Mature alpha-beta t cell
Mast cell
Neutrophil
Epithelial cell
Plasma cell
Cd14-positive, cd16-negative classical monocyte
Dendritic cell
B cell
Mature gamma-delta t cell
Megakaryocyte
Cd8-positive, alpha-beta t cell
Natural killer cell
Macrophage
Ciliated cell
Monocyte
Squamous epithelial cell
Tissue
Lung
Blood
Saliva
Developmental stage
54-year-old stage
35-year-old stage
39-year-old stage
62-year-old stage
27-year-old stage
78-year-old stage
73-year-old stage
74-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
19-year-old stage
83-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
82-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
48-year-old stage
70-year-old stage
6-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
30-year-old stage
55-year-old stage
58-year-old stage
15-year-old stage
50-year-old stage
51-year-old stage
79-year-old stage
29-year-old stage
66-year-old stage
77-year-old stage
33-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
76-year-old stage
31-year-old stage
8-year-old stage
87-year-old stage
63-year-old stage
60-year-old stage
80-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
92-year-old stage
67-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
16-year-old stage
47-year-old stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
Mendeley Data Dataset:dvp4y5ttd5
covid19.cancer-pku.cn
GEO series:GSE158055
cancer-pku.cn
UCSC Cell Browser:covid19-critical-immuno
ngdc.cncb.ac.cn
HumanCellAtlas:5f607e50-ba22-4598-b1e9-f3d9d7a35dcc
CELLxGENE
1,395,601 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L6b glutamatergic cortical neuron
+17
L6b glutamatergic cortical neuron
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
78-year-old stage
+20
78-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L6b glutamatergic cortical neuron
Lamp5 gabaergic interneuron
Astrocyte of the cerebral cortex
Corticothalamic-projecting glutamatergic cortical neuron
Pvalb chandelier gabaergic interneuron
Vip gabaergic interneuron
Oligodendrocyte precursor cell
Caudal ganglionic eminence derived interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Oligodendrocyte
Cerebral cortex endothelial cell
Pvalb gabaergic interneuron
Sncg gabaergic interneuron
Sst gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Microglial cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
78-year-old stage
80 year-old and over stage
72-year-old stage
83-year-old stage
85-year-old stage
81-year-old stage
82-year-old stage
42-year-old stage
86-year-old stage
70-year-old stage
75-year-old stage
50-year-old stage
89-year-old stage
68-year-old stage
29-year-old stage
77-year-old stage
69-year-old stage
88-year-old stage
87-year-old stage
80-year-old stage
84-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
1,388,643 cells
•
Lake et al., 2025
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Peritubular capillary endothelial cell
+62
Peritubular capillary endothelial cell
Cortex of kidney
+3
Cortex of kidney
54-year-old stage
+23
54-year-old stage
Chronic kidney disease
+2
Chronic kidney disease
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Peritubular capillary endothelial cell
Epithelial cell of proximal tubule segment 3
Kidney loop of henle thin descending limb epithelial cell
Kidney loop of henle thick ascending limb epithelial cell
Renal interstitial pericyte
Mucosal invariant t cell
Kidney efferent arteriole endothelial cell
Parietal epithelial cell
Glomerular capillary endothelial cell
Kidney resident macrophage
Mast cell
Effector memory cd8-positive, alpha-beta t cell
Cd8-alpha-positive thymic conventional dendritic cell
Epithelial cell of proximal tubule
Podocyte
Kidney cortex collecting duct principal cell
Vasa recta ascending limb cell
Kidney cortex peritubular capillary cell
Vasa recta cell
Vein endothelial cell
Kidney connecting tubule epithelial cell
Neutrophil
Kidney loop of henle cortical thick ascending limb epithelial cell
Kidney interstitial myofibroblast
Adventitial fibroblast
Vasa recta descending limb cell
Plasma cell
Kidney collecting duct alpha-intercalated cell
B cell
Kidney collecting duct beta-intercalated cell
Epithelial cell of proximal tubule segment 1
Vascular associated smooth muscle cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Juxtaglomerular complex cell
Kidney connecting tubule principal cell
Non-classical monocyte
Plasmacytoid dendritic cell, human
Migratory dendritic cell
Kidney interstitial fibroblast
Kidney loop of henle thin ascending limb epithelial cell
Neural cell
Adipocyte
Endothelial cell of venule
Kidney distal convoluted tubule epithelial cell
Mesangial cell
Kidney outer medulla peritubular capillary cell
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Natural killer cell
Macrophage
Papillary tips cell
Renal medullary fibroblast
Kidney collecting duct intercalated cell
Cycling macrophage
Erythrocyte
Group 3 innate lymphoid cell
Macula densa epithelial cell
Classical monocyte
Cd8-alpha-negative thymic conventional dendritic cell
Kidney collecting duct principal cell
Epithelial cell of proximal tubule segment 2
Cycling t cell
Naive regulatory t cell
Endothelial cell
Tissue
Cortex of kidney
Renal papilla
Kidney
Renal medulla
Developmental stage
54-year-old stage
Ninth decade stage
Third decade stage
57-year-old stage
Sixth decade stage
49-year-old stage
36-year-old stage
Fourth decade stage
70-year-old stage
Tenth decade stage
45-year-old stage
59-year-old stage
Eighth decade stage
14-year-old stage
64-year-old stage
29-year-old stage
66-year-old stage
69-year-old stage
76-year-old stage
Fifth decade stage
63-year-old stage
56-year-old stage
43-year-old stage
Seventh decade stage
Disease
Chronic kidney disease
Acute kidney failure
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
protocols.io:isolation-of-single-nuclei-from-solid-tissues-5qpvonb6bl4o/v1
protocols.io:single-cell-rna-sequencing-scrna-seq-eq2ly3zjpgx9/v1
kpmp.org
Github:KPMP-Scientific/KPMP-Atlas-v2
protocols.io:10x-genomics-single-nucleus-rna-sequencing-for-tra-e6nvw99wzgmk/v3
protocols.io:10x-genomics-single-nucleus-multiome-rna-atac-assa-5qpvoby69l4o/v2
CELLxGENE
1,378,211 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L6b glutamatergic cortical neuron
+17
L6b glutamatergic cortical neuron
Middle temporal gyrus
Middle temporal gyrus
78-year-old stage
+23
78-year-old stage
Dementia
+1
Dementia
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L6b glutamatergic cortical neuron
Lamp5 gabaergic interneuron
Astrocyte of the cerebral cortex
Corticothalamic-projecting glutamatergic cortical neuron
Pvalb chandelier gabaergic interneuron
Vip gabaergic interneuron
Oligodendrocyte precursor cell
Caudal ganglionic eminence derived interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Oligodendrocyte
Cerebral cortex endothelial cell
Pvalb gabaergic interneuron
Sncg gabaergic interneuron
Sst gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Microglial cell
Tissue
Middle temporal gyrus
Developmental stage
78-year-old stage
80 year-old and over stage
72-year-old stage
83-year-old stage
85-year-old stage
81-year-old stage
82-year-old stage
42-year-old stage
86-year-old stage
70-year-old stage
75-year-old stage
50-year-old stage
89-year-old stage
68-year-old stage
29-year-old stage
77-year-old stage
69-year-old stage
88-year-old stage
87-year-old stage
60-year-old stage
80-year-old stage
84-year-old stage
43-year-old stage
65-year-old stage
Disease
Dementia
Normal
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
Allen Brain Map:seattle-alzheimers-disease
CELLxGENE
1,358,573 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Iga plasma cell
+90
Iga plasma cell
Epithelium of rectum
+35
Epithelium of rectum
54-year-old stage
+90
54-year-old stage
Crohn disease
+5
Crohn disease
Female
+1
Female
10x 5' transcription profiling
+5
10x 5' transcription profiling
Cell
Cell
Organism
Homo sapiens
Cell type
Iga plasma cell
Fibroblast
Afferent neuron
Enteroendocrine cell
Plasmablast
Mucosal invariant t cell
Inhibitory motor neuron
Transit amplifying cell
Keratinocyte
Ionocyte
Germinal center b cell
Cd16-positive, cd56-dim natural killer cell, human
Mast cell
Langerhans cell
Enterocyte
Igg plasma cell
Type x enteroendocrine cell
Effector memory cd8-positive, alpha-beta t cell
Dendritic cell, human
Neuroblast (sensu vertebrata)
Type ec enteroendocrine cell
Vein endothelial cell
Type g enteroendocrine cell
Fibroblastic reticular cell
Tuft cell of small intestine
Smooth muscle cell
Melanocyte
Pro-b cell
Epithelial cell
Enteroglial cell
Cd4-positive, alpha-beta memory t cell
Interstitial cell of cajal
Memory b cell
Follicular dendritic cell
Gamma-delta t cell
Regulatory t cell
Mesenchymal cell
T-helper 17 cell
Neutrophil progenitor cell
Megakaryocyte
Myoepithelial cell
Vascular associated smooth muscle cell
Capillary endothelial cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Paneth cell
Motor neuron
Pericyte
Salivary gland glandular cell
Cycling basal cell
Myofibroblast cell
Angiogenic pericyte
Fibroblast of gingiva
Glandular cell of esophagus
Naive thymus-derived cd8-positive, alpha-beta t cell
Precursor b cell
Plasmacytoid dendritic cell, human
Intestine goblet cell
Interneuron
Mesodermal cell
Muscle cell
Eosinophil
Progenitor cell
Igm plasma cell
Gastrointestinal tract (lamina propria) macrophage
Endothelial cell of lymphatic vessel
Trem2-positive macrophage
Cd16-negative, cd56-bright natural killer cell, human
Mucous neck cell of gastric gland
Macrophage
Foveolar cell of stomach
Colonocyte
Erythrocyte
Best4+ enterocyte
Group 3 innate lymphoid cell
Conventional dendritic cell
Monocyte
Parietal cell
Intestinal crypt stem cell
Basal cell
Cd8-positive, alpha-beta memory t cell
Mesothelial cell
Cycling t cell
Enteric neuron
Peptic cell
Naive b cell
Acinar cell of salivary gland
Immature pericyte
M cell of gut
T follicular helper cell
Endothelial cell
Endothelial cell of artery
Tissue
Epithelium of rectum
Ileum lamina propria
Ileal epithelium
Epithelium of esophagus
Stomach
Ascending colon
Sigmoid colon
Transverse colon
Pyloric antrum
Caecum
Colonic epithelium
Colonic mucosa
Mesenteric lymph node
Ileum
Vermiform appendix
Descending colon
Rectosigmoid junction
Small intestine
Duodenal epithelium
Periodontium
Body of stomach
Intestine
Buccal mucosa
Esophagus
Jejunum
Epithelium of stomach
Rectum
Labial gland
Duodenum
Pylorus
Gingiva
Epithelium of small intestine
Parotid gland
Lamina propria of mucosa of colon
Lamina propria of small intestine
Colon
Developmental stage
54-year-old stage
35-year-old stage
Adult stage
39-year-old stage
62-year-old stage
Carnegie stage 19
74-year-old stage
26-year-old stage
72-year-old stage
9-year-old stage
21st week post-fertilization stage
Third decade stage
Carnegie stage 18
10th week post-fertilization stage
21-year-old stage
85-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
Juvenile stage (5-14 yo)
13-year-old stage
Sixth decade stage
Newborn stage (0-28 days)
Embryonic stage
4-year-old stage
16th week post-fertilization stage
Fourth decade stage
52-year-old stage
86-year-old stage
48-year-old stage
Carnegie stage 22
19th week post-fertilization stage
70-year-old stage
6-year-old stage
12-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
Eighth decade stage
30-year-old stage
10-year-old stage
2-month-old stage
55-year-old stage
23-year-old stage
58-year-old stage
14-year-old stage
2-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
15th week post-fertilization stage
77-year-old stage
11-year-old stage
11th week post-fertilization stage
13th week post-fertilization stage
33-year-old stage
69-year-old stage
32-year-old stage
12th week post-fertilization stage
28-year-old stage
76-year-old stage
Young adult stage
5-year-old stage
Fifth decade stage
31-year-old stage
Carnegie stage 17
87-year-old stage
63-year-old stage
60-year-old stage
80-year-old stage
Prime adult stage
18th week post-fertilization stage
84-year-old stage
56-year-old stage
37-year-old stage
Pediatric stage
9th week post-fertilization stage
46-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
65-year-old stage
17th week post-fertilization stage
Seventh decade stage
44-year-old stage
34-year-old stage
Carnegie stage 16
Disease
Crohn disease
Inflammatory bowel disease
Colorectal cancer
Gastric cancer
Normal
Ulcerative colitis
Sex
Female
Male
Technology
10x 5' transcription profiling
10x 3' v3
10x 3' v1
10x 5' v2
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
1,350,748 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+37
Innate lymphoid cell
Blood
Blood
62-year-old stage
+10
62-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Basophil mast progenitor cell
Double negative thymocyte
Mucosal invariant t cell
Common myeloid progenitor
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Cd14-low, cd16-positive monocyte
Be cell
Intermediate monocyte
Central memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
Cd14-positive, cd16-negative classical monocyte
Mature gamma-delta t cell
Axl+ dendritic cell, human
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Memory regulatory t cell
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Natural killer cell
Platelet
Erythrocyte
Cd8-positive, alpha-beta memory t cell
T cell
Cd8aa(i) thymocyte
Naive b cell
Memory ccr4-positive regulatory t cell
Naive regulatory t cell
Transitional stage b cell
Common lymphoid progenitor
Tissue
Blood
Developmental stage
62-year-old stage
61-year-old stage
57-year-old stage
59-year-old stage
55-year-old stage
58-year-old stage
64-year-old stage
63-year-old stage
60-year-old stage
56-year-old stage
65-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,332,155 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
L6b glutamatergic neuron of the primary motor cortex
+24
L6b glutamatergic neuron of the primary motor cortex
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
54-year-old stage
+83
54-year-old stage
Type 1 diabetes mellitus
+3
Type 1 diabetes mellitus
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L6b glutamatergic neuron of the primary motor cortex
Astrocyte
Lamp5 gabaergic interneuron
L6 intratelencephalic projecting glutamatergic neuron
Gabaergic neuron
Smooth muscle cell
L2/3 intratelencephalic projecting glutamatergic neuron
Vip gabaergic interneuron
Oligodendrocyte precursor cell
L2/3-6 intratelencephalic projecting glutamatergic neuron
Plasma cell
Oligodendrocyte
B cell
L6 corticothalamic-projecting glutamatergic cortical neuron
Pericyte
L5/6 near-projecting glutamatergic neuron
Pvalb gabaergic interneuron
Natural killer cell
Sst gabaergic interneuron
Perivascular macrophage
L5 extratelencephalic projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Microglial cell
T cell
Endothelial cell
Tissue
Dorsolateral prefrontal cortex
Developmental stage
54-year-old stage
35-year-old stage
62-year-old stage
27-year-old stage
78-year-old stage
80 year-old and over stage
73-year-old stage
74-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
19-year-old stage
21-year-old stage
83-year-old stage
85-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
13-year-old stage
49-year-old stage
42-year-old stage
1-month-old stage
36-year-old stage
17-year-old stage
4-year-old stage
52-year-old stage
86-year-old stage
48-year-old stage
70-year-old stage
6-year-old stage
40-year-old stage
12-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
3-year-old stage
30-year-old stage
10-year-old stage
2-month-old stage
55-year-old stage
23-year-old stage
58-year-old stage
3-month-old stage
14-year-old stage
2-year-old stage
75-year-old stage
22-year-old stage
15-year-old stage
18-year-old stage
50-year-old stage
51-year-old stage
79-year-old stage
89-year-old stage
64-year-old stage
29-year-old stage
66-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
76-year-old stage
4-month-old stage
5-year-old stage
31-year-old stage
88-year-old stage
8-year-old stage
63-year-old stage
60-year-old stage
84-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
24-year-old stage
6-month-old stage
67-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
16-year-old stage
47-year-old stage
Disease
Type 1 diabetes mellitus
Atherosclerosis
Type 2 diabetes mellitus
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:DiseaseNeuroGenomics/PsychADxD
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2024.11.04.24316495
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1038/s41597-025-04687-5
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2023.03.17.533005
CELLxGENE
1,322,061 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+37
Innate lymphoid cell
Blood
Blood
57-year-old stage
+8
57-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Basophil mast progenitor cell
Double negative thymocyte
Mucosal invariant t cell
Common myeloid progenitor
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Cd14-low, cd16-positive monocyte
Be cell
Intermediate monocyte
Central memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
Cd14-positive, cd16-negative classical monocyte
Mature gamma-delta t cell
Axl+ dendritic cell, human
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Memory regulatory t cell
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Natural killer cell
Platelet
Erythrocyte
Cd8-positive, alpha-beta memory t cell
T cell
Cd8aa(i) thymocyte
Naive b cell
Memory ccr4-positive regulatory t cell
Naive regulatory t cell
Transitional stage b cell
Common lymphoid progenitor
Tissue
Blood
Developmental stage
57-year-old stage
59-year-old stage
55-year-old stage
58-year-old stage
64-year-old stage
66-year-old stage
60-year-old stage
56-year-old stage
65-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,283,972 cells
•
Salcher et al., 2022
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Multiciliated epithelial cell
+32
Multiciliated epithelial cell
Adrenal tissue
+5
Adrenal tissue
54-year-old stage
+56
54-year-old stage
Squamous cell lung carcinoma
+4
Squamous cell lung carcinoma
Female
+1
Female
Bd rhapsody whole transcriptome analysis
+8
Bd rhapsody whole transcriptome analysis
Cell
Cell
Organism
Homo sapiens
Cell type
Multiciliated epithelial cell
Myeloid cell
Mast cell
Bronchus fibroblast of lung
Vein endothelial cell
Alveolar macrophage
Smooth muscle cell
Neutrophil
Stromal cell
Malignant cell
Plasma cell
Dendritic cell
B cell
Regulatory t cell
Fibroblast of lung
Cd1c-positive myeloid dendritic cell
Capillary endothelial cell
Pericyte
Epithelial cell of lung
Club cell
Non-classical monocyte
Pulmonary alveolar type 2 cell
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta t cell
Pulmonary alveolar type 1 cell
Endothelial cell of lymphatic vessel
Natural killer cell
Macrophage
Conventional dendritic cell
Classical monocyte
Mesothelial cell
Cd4-positive, alpha-beta t cell
Pulmonary artery endothelial cell
Tissue
Adrenal tissue
Lung
Pleural effusion
Liver
Brain
Lymph node
Developmental stage
54-year-old stage
90-year-old stage
35-year-old stage
62-year-old stage
78-year-old stage
73-year-old stage
74-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
21-year-old stage
83-year-old stage
61-year-old stage
57-year-old stage
82-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
86-year-old stage
48-year-old stage
70-year-old stage
40-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
79-year-old stage
64-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
77-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
76-year-old stage
31-year-old stage
63-year-old stage
60-year-old stage
80-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
67-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
47-year-old stage
Disease
Squamous cell lung carcinoma
Non-small cell lung carcinoma
Normal
Chronic obstructive pulmonary disease
Lung adenocarcinoma
Sex
Female
Male
Technology
Bd rhapsody whole transcriptome analysis
10x 3' v3
Drop-seq
10x 3' v1
Indrop
Smart-seq2
10x 5' v1
10x 3' v2
Gexscope technology
Suspension type
Cell
Related Links
Zenodo record:7227571
CELLxGENE
1,281,499 cells
•
Wells et al., 2025
Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmablast
+30
Plasmablast
Skin of body
+13
Skin of body
27-year-old stage
+16
27-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmablast
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Germinal center b cell
Cd16-positive, cd56-dim natural killer cell, human
Mast cell
Effector memory cd8-positive, alpha-beta t cell
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Central memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Memory b cell
Plasma cell
B cell
Gamma-delta t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell, terminally differentiated
Immature innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Non-classical monocyte
Plasmacytoid dendritic cell
Progenitor cell
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Macrophage
Group 1 innate lymphoid cell
Group 3 innate lymphoid cell
Conventional dendritic cell
Cd8-positive, alpha-beta memory t cell
Classical monocyte
Naive b cell
Tissue
Skin of body
Lung
Colonic epithelium
Mesenteric lymph node
Liver
Jejunal epithelium
Blood
Epithelial lining fluid
Bone marrow
Spleen
Thoracic lymph node
Jejunum lamina propria
Lamina propria of mucosa of colon
Inguinal lymph node
Developmental stage
27-year-old stage
73-year-old stage
Third decade stage
Sixth decade stage
Fourth decade stage
48-year-old stage
Eighth decade stage
23-year-old stage
75-year-old stage
64-year-old stage
68-year-old stage
33-year-old stage
Fifth decade stage
25-year-old stage
56-year-old stage
67-year-old stage
20-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
GEO series:GSE299043
Github:YosefLab/CZI-Immuneaging
CELLxGENE
1,265,624 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+31
Innate lymphoid cell
Blood
Blood
54-year-old stage
+54
54-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Pre-conventional dendritic cell
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Myeloid cell
Cd16-positive, cd56-dim natural killer cell, human
Cd14-low, cd16-positive monocyte
Cd14-positive monocyte
Cd4-positive, alpha-beta cytotoxic t cell
Central memory cd4-positive, alpha-beta t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
B cell
Gamma-delta t cell
Regulatory t cell
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Hematopoietic stem cell
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta t cell
Cd16-negative, cd56-bright natural killer cell, human
Natural killer cell
Mature b cell
Double negative t regulatory cell
Platelet
Cd8-positive, alpha-beta memory t cell
Cd4-positive, alpha-beta t cell
T cell
Naive b cell
Cd8-positive, alpha-beta cytotoxic t cell
Tissue
Blood
Developmental stage
54-year-old stage
35-year-old stage
39-year-old stage
62-year-old stage
27-year-old stage
73-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
19-year-old stage
21-year-old stage
61-year-old stage
57-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
48-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
30-year-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
64-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
77-year-old stage
33-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
31-year-old stage
63-year-old stage
60-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
celltype.info
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
CELLxGENE
1,263,676 cells
•
Perez et al., 2022
Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus
Explore
h5ad
Homo sapiens
Homo sapiens
Plasmablast
+10
Plasmablast
Blood
Blood
54-year-old stage
+54
54-year-old stage
Systemic lupus erythematosus
+1
Systemic lupus erythematosus
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Plasmablast
B cell
Non-classical monocyte
Plasmacytoid dendritic cell
Lymphocyte
Progenitor cell
Cd8-positive, alpha-beta t cell
Natural killer cell
Conventional dendritic cell
Classical monocyte
Cd4-positive, alpha-beta t cell
Tissue
Blood
Developmental stage
54-year-old stage
35-year-old stage
39-year-old stage
62-year-old stage
27-year-old stage
73-year-old stage
74-year-old stage
26-year-old stage
53-year-old stage
21-year-old stage
83-year-old stage
61-year-old stage
57-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
48-year-old stage
70-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
30-year-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
64-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
33-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
31-year-old stage
63-year-old stage
60-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
24-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
47-year-old stage
Disease
Systemic lupus erythematosus
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
dbGaP Study:phs002812
GEO series:GSE137029
Zenodo record:4724043#.YYQZDr3MKS5
UCSC Cell Browser:lupus-pbmc
HumanCellAtlas:9fc0064b-84ce-40a5-a768-e6eb3d364ee0
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