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659
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43
Bgee
40
Cellxgene
2,077
Single cell portal
183
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2343
datasets
CELLxGENE
1,486,324 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+24
Oligodendrocyte
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
85-year-old stage
+77
85-year-old stage
Normal
+19
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
L5/6 near-projecting glutamatergic neuron
L6b glutamatergic neuron of the primary motor cortex
Pericyte
Vascular leptomeningeal cell
Sst gabaergic interneuron
L2/3 intratelencephalic projecting glutamatergic neuron
T cell
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
Perivascular macrophage
L6 corticothalamic-projecting glutamatergic cortical neuron
Oligodendrocyte precursor cell
Plasma cell
Microglial cell
L2/3-6 intratelencephalic projecting glutamatergic neuron
L6 intratelencephalic projecting glutamatergic neuron
Endothelial cell
Gabaergic neuron
Smooth muscle cell
B cell
Vip gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Astrocyte
Tissue
Dorsolateral prefrontal cortex
Developmental stage
85-year-old stage
6-year-old stage
26-year-old stage
50-year-old stage
52-year-old stage
4-month-old stage
65-year-old stage
68-year-old stage
43-year-old stage
41-year-old stage
2-month-old stage
35-year-old stage
14-year-old stage
63-year-old stage
5-year-old stage
15-year-old stage
37-year-old stage
29-year-old stage
58-year-old stage
24-year-old stage
73-year-old stage
22-year-old stage
75-year-old stage
3-year-old stage
84-year-old stage
34-year-old stage
31-year-old stage
42-year-old stage
49-year-old stage
1-month-old stage
59-year-old stage
54-year-old stage
25-year-old stage
12-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
2-year-old stage
74-year-old stage
21-year-old stage
83-year-old stage
53-year-old stage
46-year-old stage
56-year-old stage
55-year-old stage
44-year-old stage
78-year-old stage
47-year-old stage
20-year-old stage
36-year-old stage
32-year-old stage
45-year-old stage
76-year-old stage
67-year-old stage
4-year-old stage
6-month-old stage
40-year-old stage
3-month-old stage
13-year-old stage
60-year-old stage
62-year-old stage
19-year-old stage
16-year-old stage
10-year-old stage
39-year-old stage
28-year-old stage
18-year-old stage
38-year-old stage
8-year-old stage
23-year-old stage
30-year-old stage
79-year-old stage
27-year-old stage
17-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
33-year-old stage
Disease
Normal
Obsessive-compulsive disorder
Brain neoplasm
Schizophrenia
Schizoaffective depressive disorder
Bipolar disorder
Atherosclerosis
Type 2 diabetes mellitus
Major depressive disorder
Diabetes mellitus
Tardive dyskinesia
Anorexia nervosa
Type 1 diabetes mellitus
Bipolar i disorder
Bipolar ii disorder
Attention deficit-hyperactivity disorder
Post-traumatic stress disorder
Epilepsy
Schizoaffective bipolar disorder
Bulimia nervosa
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316586
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1101/2023.03.17.533005
DOI:10.1038/s41597-025-04687-5
Github:DiseaseNeuroGenomics/PsychADxD
DOI:10.1101/2024.11.04.24316495
CELLxGENE
1,462,702 cells
•
Ren et al., 2021
COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Megakaryocyte
+17
Megakaryocyte
Saliva
+2
Saliva
6-year-old stage
+63
6-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Megakaryocyte
Natural killer cell
Neutrophil
Cd14-positive, cd16-negative classical monocyte
Cd8-positive, alpha-beta t cell
Mast cell
Monocyte
Mature gamma-delta t cell
Squamous epithelial cell
Ciliated cell
Macrophage
Dendritic cell
Epithelial cell
Mature alpha-beta t cell
Plasma cell
Cd14-positive, cd16-positive monocyte
Secretory cell
B cell
Tissue
Saliva
Blood
Lung
Developmental stage
6-year-old stage
80-year-old stage
26-year-old stage
50-year-old stage
52-year-old stage
65-year-old stage
82-year-old stage
43-year-old stage
41-year-old stage
35-year-old stage
63-year-old stage
15-year-old stage
37-year-old stage
29-year-old stage
58-year-old stage
73-year-old stage
34-year-old stage
31-year-old stage
42-year-old stage
49-year-old stage
59-year-old stage
54-year-old stage
25-year-old stage
92-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
74-year-old stage
83-year-old stage
53-year-old stage
46-year-old stage
56-year-old stage
55-year-old stage
44-year-old stage
77-year-old stage
78-year-old stage
47-year-old stage
20-year-old stage
36-year-old stage
32-year-old stage
45-year-old stage
70-year-old stage
81-year-old stage
76-year-old stage
69-year-old stage
67-year-old stage
40-year-old stage
87-year-old stage
60-year-old stage
62-year-old stage
19-year-old stage
16-year-old stage
39-year-old stage
28-year-old stage
38-year-old stage
8-year-old stage
30-year-old stage
79-year-old stage
72-year-old stage
27-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
33-year-old stage
Disease
Normal
Covid-19
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
covid19.cancer-pku.cn
GEO series:GSE158055
cancer-pku.cn
UCSC Cell Browser:covid19-critical-immuno
ngdc.cncb.ac.cn
Mendeley Data Dataset:dvp4y5ttd5
HumanCellAtlas:5f607e50-ba22-4598-b1e9-f3d9d7a35dcc
CELLxGENE
1,395,601 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+17
Oligodendrocyte
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
80 year-old and over stage
+20
80 year-old and over stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
L6b glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Sst gabaergic interneuron
Cerebral cortex endothelial cell
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
Oligodendrocyte precursor cell
Sncg gabaergic interneuron
Microglial cell
Caudal ganglionic eminence derived interneuron
Corticothalamic-projecting glutamatergic cortical neuron
Astrocyte of the cerebral cortex
L2/3-6 intratelencephalic projecting glutamatergic neuron
Pvalb chandelier gabaergic interneuron
Vip gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Dorsolateral prefrontal cortex
Developmental stage
80 year-old and over stage
85-year-old stage
80-year-old stage
50-year-old stage
68-year-old stage
82-year-old stage
29-year-old stage
75-year-old stage
84-year-old stage
42-year-old stage
86-year-old stage
83-year-old stage
89-year-old stage
77-year-old stage
78-year-old stage
70-year-old stage
81-year-old stage
69-year-old stage
88-year-old stage
87-year-old stage
72-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
BRaIN-lab
AD knowledge portal:syn26223298
CELLxGENE
1,388,643 cells
•
Lake et al., 2025
Cellular and Spatial Drivers of Unresolved Injury and Functional Decline in the Human Kidney
Explore
h5ad
Homo sapiens
Homo sapiens
Non-classical monocyte
+62
Non-classical monocyte
Kidney
+3
Kidney
Tenth decade stage
+23
Tenth decade stage
Normal
+2
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Non-classical monocyte
Migratory dendritic cell
Natural killer cell
Cd8-alpha-positive thymic conventional dendritic cell
Erythrocyte
Neutrophil
Kidney outer medulla peritubular capillary cell
Classical monocyte
Kidney loop of henle cortical thick ascending limb epithelial cell
Juxtaglomerular complex cell
Kidney interstitial fibroblast
Kidney cortex collecting duct principal cell
Mast cell
Vascular associated smooth muscle cell
Epithelial cell of proximal tubule segment 2
Renal interstitial pericyte
Peritubular capillary endothelial cell
Mesangial cell
Kidney loop of henle thin ascending limb epithelial cell
Kidney collecting duct intercalated cell
Renal medullary fibroblast
Group 3 innate lymphoid cell
Kidney resident macrophage
Epithelial cell of proximal tubule
Papillary tips cell
Kidney collecting duct principal cell
Kidney interstitial myofibroblast
Naive thymus-derived cd4-positive, alpha-beta t cell
Macrophage
Vasa recta descending limb cell
Epithelial cell of proximal tubule segment 1
Kidney loop of henle thick ascending limb epithelial cell
Plasmacytoid dendritic cell, human
Neural cell
Endothelial cell of venule
Adventitial fibroblast
Vein endothelial cell
Kidney connecting tubule principal cell
Kidney cortex peritubular capillary cell
Cd8-alpha-negative thymic conventional dendritic cell
Epithelial cell of proximal tubule segment 3
Parietal epithelial cell
Kidney distal convoluted tubule epithelial cell
Adipocyte
Cycling t cell
Plasma cell
Kidney collecting duct beta-intercalated cell
Mucosal invariant t cell
Vasa recta cell
Kidney connecting tubule epithelial cell
Cycling macrophage
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Endothelial cell
Vasa recta ascending limb cell
Kidney loop of henle thin descending limb epithelial cell
Effector memory cd8-positive, alpha-beta t cell
Naive regulatory t cell
B cell
Kidney collecting duct alpha-intercalated cell
Podocyte
Macula densa epithelial cell
Glomerular capillary endothelial cell
Kidney efferent arteriole endothelial cell
Tissue
Kidney
Renal medulla
Renal papilla
Cortex of kidney
Developmental stage
Tenth decade stage
64-year-old stage
43-year-old stage
Fifth decade stage
14-year-old stage
63-year-old stage
29-year-old stage
Ninth decade stage
49-year-old stage
59-year-old stage
54-year-old stage
66-year-old stage
57-year-old stage
Eighth decade stage
Fourth decade stage
56-year-old stage
Seventh decade stage
36-year-old stage
45-year-old stage
70-year-old stage
76-year-old stage
69-year-old stage
Sixth decade stage
Third decade stage
Disease
Normal
Acute kidney failure
Chronic kidney disease
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
protocols.io:10x-genomics-single-nucleus-rna-sequencing-for-tra-e6nvw99wzgmk/v3
protocols.io:single-cell-rna-sequencing-scrna-seq-eq2ly3zjpgx9/v1
protocols.io:10x-genomics-single-nucleus-multiome-rna-atac-assa-5qpvoby69l4o/v2
kpmp.org
Github:KPMP-Scientific/KPMP-Atlas-v2
protocols.io:isolation-of-single-nuclei-from-solid-tissues-5qpvonb6bl4o/v1
CELLxGENE
1,378,211 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+17
Oligodendrocyte
Middle temporal gyrus
Middle temporal gyrus
80 year-old and over stage
+23
80 year-old and over stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
L6b glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Vascular leptomeningeal cell
Sst gabaergic interneuron
Cerebral cortex endothelial cell
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
Oligodendrocyte precursor cell
Sncg gabaergic interneuron
Microglial cell
Caudal ganglionic eminence derived interneuron
Corticothalamic-projecting glutamatergic cortical neuron
Astrocyte of the cerebral cortex
L2/3-6 intratelencephalic projecting glutamatergic neuron
Pvalb chandelier gabaergic interneuron
Vip gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Tissue
Middle temporal gyrus
Developmental stage
80 year-old and over stage
85-year-old stage
80-year-old stage
50-year-old stage
65-year-old stage
68-year-old stage
82-year-old stage
43-year-old stage
29-year-old stage
75-year-old stage
84-year-old stage
42-year-old stage
86-year-old stage
83-year-old stage
89-year-old stage
77-year-old stage
78-year-old stage
70-year-old stage
81-year-old stage
69-year-old stage
88-year-old stage
87-year-old stage
60-year-old stage
72-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AWS Open Data:allen-sea-ad-atlas
AD knowledge portal:syn26223298
CELLxGENE
1,358,573 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Megakaryocyte
+90
Megakaryocyte
Colon
+35
Colon
85-year-old stage
+90
85-year-old stage
Normal
+5
Normal
Female
+1
Female
10x 3' v2
+5
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Megakaryocyte
Dendritic cell, human
Parietal cell
Interneuron
Erythrocyte
Naive b cell
Follicular dendritic cell
Endothelial cell of lymphatic vessel
Interstitial cell of cajal
Regulatory t cell
Neuroblast (sensu vertebrata)
Capillary endothelial cell
Mast cell
Vascular associated smooth muscle cell
Myoepithelial cell
Fibroblast
Intestine goblet cell
Immature pericyte
Progenitor cell
Monocyte
Igg plasma cell
Enteric neuron
Pericyte
Fibroblast of gingiva
Cycling basal cell
Mesodermal cell
Group 3 innate lymphoid cell
Paneth cell
Motor neuron
Naive thymus-derived cd8-positive, alpha-beta t cell
T-helper 17 cell
Memory b cell
Type g enteroendocrine cell
Precursor b cell
Enteroendocrine cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Trem2-positive macrophage
Macrophage
Gamma-delta t cell
Tuft cell of small intestine
Neutrophil progenitor cell
Peptic cell
Mesothelial cell
Cd8-positive, alpha-beta memory t cell
Plasmacytoid dendritic cell, human
Plasmablast
Cd4-positive, alpha-beta memory t cell
Vein endothelial cell
Type x enteroendocrine cell
Cd16-negative, cd56-bright natural killer cell, human
Eosinophil
Foveolar cell of stomach
Epithelial cell
Intestinal crypt stem cell
Acinar cell of salivary gland
Colonocyte
Mucous neck cell of gastric gland
Pro-b cell
Langerhans cell
Conventional dendritic cell
Cycling t cell
Germinal center b cell
Enterocyte
Best4+ enterocyte
Iga plasma cell
Ionocyte
Gastrointestinal tract (lamina propria) macrophage
Transit amplifying cell
Mucosal invariant t cell
Fibroblastic reticular cell
Type ec enteroendocrine cell
Mesenchymal cell
Myofibroblast cell
M cell of gut
Muscle cell
Salivary gland glandular cell
Endothelial cell
Cd16-positive, cd56-dim natural killer cell, human
T follicular helper cell
Glandular cell of esophagus
Smooth muscle cell
Effector memory cd8-positive, alpha-beta t cell
Endothelial cell of artery
Enteroglial cell
Keratinocyte
Igm plasma cell
Inhibitory motor neuron
Melanocyte
Afferent neuron
Angiogenic pericyte
Basal cell
Tissue
Colon
Ileum
Parotid gland
Epithelium of stomach
Rectosigmoid junction
Epithelium of rectum
Ascending colon
Sigmoid colon
Duodenum
Duodenal epithelium
Ileal epithelium
Descending colon
Rectum
Colonic epithelium
Lamina propria of small intestine
Buccal mucosa
Pylorus
Intestine
Stomach
Small intestine
Periodontium
Mesenteric lymph node
Epithelium of esophagus
Pyloric antrum
Caecum
Colonic mucosa
Transverse colon
Ileum lamina propria
Lamina propria of mucosa of colon
Epithelium of small intestine
Jejunum
Labial gland
Vermiform appendix
Esophagus
Body of stomach
Gingiva
Developmental stage
85-year-old stage
6-year-old stage
80-year-old stage
15th week post-fertilization stage
26-year-old stage
50-year-old stage
52-year-old stage
65-year-old stage
68-year-old stage
43-year-old stage
41-year-old stage
2-month-old stage
35-year-old stage
Fifth decade stage
14-year-old stage
63-year-old stage
5-year-old stage
37-year-old stage
11th week post-fertilization stage
Juvenile stage (5-14 yo)
29-year-old stage
58-year-old stage
24-year-old stage
21st week post-fertilization stage
Adult stage
22-year-old stage
75-year-old stage
84-year-old stage
Embryonic stage
34-year-old stage
Pediatric stage
31-year-old stage
Carnegie stage 18
86-year-old stage
59-year-old stage
54-year-old stage
9-year-old stage
9th week post-fertilization stage
13th week post-fertilization stage
12-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
11-year-old stage
2-year-old stage
74-year-old stage
Eighth decade stage
19th week post-fertilization stage
21-year-old stage
Carnegie stage 22
Fourth decade stage
46-year-old stage
56-year-old stage
55-year-old stage
44-year-old stage
77-year-old stage
Seventh decade stage
32-year-old stage
12th week post-fertilization stage
45-year-old stage
10th week post-fertilization stage
70-year-old stage
81-year-old stage
76-year-old stage
69-year-old stage
67-year-old stage
4-year-old stage
Newborn stage (0-28 days)
17th week post-fertilization stage
16th week post-fertilization stage
13-year-old stage
87-year-old stage
Young adult stage
60-year-old stage
62-year-old stage
Sixth decade stage
10-year-old stage
39-year-old stage
Carnegie stage 19
28-year-old stage
Prime adult stage
23-year-old stage
30-year-old stage
18th week post-fertilization stage
Carnegie stage 16
72-year-old stage
Carnegie stage 17
48-year-old stage
51-year-old stage
33-year-old stage
Third decade stage
Disease
Normal
Colorectal cancer
Ulcerative colitis
Crohn disease
Inflammatory bowel disease
Gastric cancer
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
10x 5' transcription profiling
10x 5' v2
10x 3' v1
10x 5' v1
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
1,350,748 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+37
Natural killer cell
Blood
Blood
64-year-old stage
+10
64-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Memory regulatory t cell
Erythrocyte
Cd14-positive, cd16-negative classical monocyte
Naive b cell
Transitional stage b cell
Memory ccr4-positive regulatory t cell
Cd1c-positive myeloid dendritic cell
Common myeloid progenitor
Mature gamma-delta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Double negative thymocyte
Axl+ dendritic cell, human
Naive thymus-derived cd4-positive, alpha-beta t cell
T cell
Cd14-low, cd16-positive monocyte
Central memory cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta memory t cell
Cd8-positive, alpha-beta regulatory t cell
Cd4-positive, alpha-beta memory t cell
Cd16-negative, cd56-bright natural killer cell, human
Be cell
Common lymphoid progenitor
Platelet
Plasma cell
Basophil mast progenitor cell
Central memory cd8-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Plasmacytoid dendritic cell
Cd141-positive myeloid dendritic cell
Cd8aa(i) thymocyte
Innate lymphoid cell
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Naive regulatory t cell
Intermediate monocyte
Tissue
Blood
Developmental stage
64-year-old stage
65-year-old stage
63-year-old stage
58-year-old stage
59-year-old stage
61-year-old stage
57-year-old stage
56-year-old stage
55-year-old stage
60-year-old stage
62-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE
1,332,155 cells
•
Lee et al., 2024
Single-cell atlas of transcriptomic vulnerability across multiple neurodegenerative and neuropsychiatric diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+24
Oligodendrocyte
Dorsolateral prefrontal cortex
Dorsolateral prefrontal cortex
80 year-old and over stage
+83
80 year-old and over stage
Normal
+3
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Natural killer cell
L5/6 near-projecting glutamatergic neuron
L6b glutamatergic neuron of the primary motor cortex
Pericyte
Vascular leptomeningeal cell
Sst gabaergic interneuron
L2/3 intratelencephalic projecting glutamatergic neuron
T cell
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
Perivascular macrophage
L6 corticothalamic-projecting glutamatergic cortical neuron
Oligodendrocyte precursor cell
Plasma cell
Microglial cell
L2/3-6 intratelencephalic projecting glutamatergic neuron
L6 intratelencephalic projecting glutamatergic neuron
Endothelial cell
Gabaergic neuron
Smooth muscle cell
B cell
Vip gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
Astrocyte
Tissue
Dorsolateral prefrontal cortex
Developmental stage
80 year-old and over stage
85-year-old stage
6-year-old stage
64-year-old stage
26-year-old stage
50-year-old stage
52-year-old stage
4-month-old stage
65-year-old stage
43-year-old stage
41-year-old stage
2-month-old stage
35-year-old stage
14-year-old stage
63-year-old stage
5-year-old stage
15-year-old stage
37-year-old stage
29-year-old stage
58-year-old stage
24-year-old stage
73-year-old stage
22-year-old stage
75-year-old stage
3-year-old stage
84-year-old stage
34-year-old stage
31-year-old stage
42-year-old stage
49-year-old stage
1-month-old stage
86-year-old stage
59-year-old stage
54-year-old stage
25-year-old stage
12-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
2-year-old stage
74-year-old stage
21-year-old stage
83-year-old stage
89-year-old stage
53-year-old stage
46-year-old stage
56-year-old stage
55-year-old stage
44-year-old stage
78-year-old stage
47-year-old stage
20-year-old stage
36-year-old stage
32-year-old stage
45-year-old stage
70-year-old stage
81-year-old stage
76-year-old stage
69-year-old stage
67-year-old stage
4-year-old stage
6-month-old stage
40-year-old stage
88-year-old stage
3-month-old stage
13-year-old stage
60-year-old stage
62-year-old stage
19-year-old stage
16-year-old stage
10-year-old stage
28-year-old stage
18-year-old stage
38-year-old stage
8-year-old stage
23-year-old stage
30-year-old stage
79-year-old stage
72-year-old stage
27-year-old stage
17-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
Disease
Normal
Atherosclerosis
Type 2 diabetes mellitus
Type 1 diabetes mellitus
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
DOI:10.1101/2024.11.04.24316495
Github:DiseaseNeuroGenomics/PsychADxD
adknowledgeportal.synapse.org
psych-ad.org
DOI:10.1101/2024.11.06.24316592
DOI:10.1101/2024.11.01.24316589
DOI:10.1101/2024.11.02.24316590
DOI:10.1101/2025.01.29.635498
DOI:10.1101/2023.05.19.541376
DOI:10.1101/2023.03.17.533005
DOI:10.1038/s41597-025-04687-5
DOI:10.1101/2024.11.01.24316586
CELLxGENE
1,322,061 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+37
Natural killer cell
Blood
Blood
64-year-old stage
+8
64-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Memory regulatory t cell
Erythrocyte
Cd14-positive, cd16-negative classical monocyte
Naive b cell
Transitional stage b cell
Memory ccr4-positive regulatory t cell
Cd1c-positive myeloid dendritic cell
Common myeloid progenitor
Mature gamma-delta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Double negative thymocyte
Axl+ dendritic cell, human
Naive thymus-derived cd4-positive, alpha-beta t cell
T cell
Cd14-low, cd16-positive monocyte
Central memory cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta memory t cell
Cd8-positive, alpha-beta regulatory t cell
Cd4-positive, alpha-beta memory t cell
Cd16-negative, cd56-bright natural killer cell, human
Be cell
Common lymphoid progenitor
Platelet
Plasma cell
Basophil mast progenitor cell
Central memory cd8-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Plasmacytoid dendritic cell
Cd141-positive myeloid dendritic cell
Cd8aa(i) thymocyte
Innate lymphoid cell
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Naive regulatory t cell
Intermediate monocyte
Tissue
Blood
Developmental stage
64-year-old stage
65-year-old stage
58-year-old stage
59-year-old stage
66-year-old stage
57-year-old stage
56-year-old stage
55-year-old stage
60-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/sound-life-scrna-analysis
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,283,972 cells
•
Salcher et al., 2022
High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Pulmonary artery endothelial cell
+32
Pulmonary artery endothelial cell
Liver
+5
Liver
80-year-old stage
+56
80-year-old stage
Normal
+4
Normal
Female
+1
Female
10x 3' v2
+8
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Pulmonary artery endothelial cell
Non-classical monocyte
Natural killer cell
Neutrophil
Classical monocyte
Cd8-positive, alpha-beta t cell
Endothelial cell of lymphatic vessel
Pulmonary alveolar type 1 cell
Regulatory t cell
Capillary endothelial cell
Mast cell
Cd1c-positive myeloid dendritic cell
Pericyte
Club cell
Malignant cell
Epithelial cell of lung
Macrophage
Dendritic cell
Mesothelial cell
Multiciliated epithelial cell
Bronchus fibroblast of lung
Vein endothelial cell
Myeloid cell
Conventional dendritic cell
Pulmonary alveolar type 2 cell
Plasma cell
Stromal cell
Alveolar macrophage
Plasmacytoid dendritic cell
Fibroblast of lung
Cd4-positive, alpha-beta t cell
Smooth muscle cell
B cell
Tissue
Liver
Lymph node
Adrenal tissue
Brain
Lung
Pleural effusion
Developmental stage
80-year-old stage
64-year-old stage
26-year-old stage
50-year-old stage
52-year-old stage
65-year-old stage
68-year-old stage
82-year-old stage
43-year-old stage
41-year-old stage
35-year-old stage
63-year-old stage
37-year-old stage
29-year-old stage
58-year-old stage
73-year-old stage
22-year-old stage
75-year-old stage
31-year-old stage
42-year-old stage
49-year-old stage
86-year-old stage
59-year-old stage
54-year-old stage
25-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
74-year-old stage
21-year-old stage
83-year-old stage
53-year-old stage
46-year-old stage
56-year-old stage
55-year-old stage
77-year-old stage
78-year-old stage
47-year-old stage
20-year-old stage
36-year-old stage
32-year-old stage
45-year-old stage
70-year-old stage
76-year-old stage
69-year-old stage
67-year-old stage
40-year-old stage
90-year-old stage
60-year-old stage
62-year-old stage
28-year-old stage
23-year-old stage
79-year-old stage
72-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
Disease
Normal
Non-small cell lung carcinoma
Chronic obstructive pulmonary disease
Lung adenocarcinoma
Squamous cell lung carcinoma
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Bd rhapsody whole transcriptome analysis
10x 3' v1
Indrop
Smart-seq2
10x 5' v1
Drop-seq
Gexscope technology
Suspension type
Cell
Related Links
Zenodo record:7227571
CELLxGENE
1,281,499 cells
•
Wells et al., 2025
Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
Explore
h5ad
Homo sapiens
Homo sapiens
Non-classical monocyte
+30
Non-classical monocyte
Liver
+13
Liver
64-year-old stage
+16
64-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Non-classical monocyte
Naive b cell
Effector memory cd4-positive, alpha-beta t cell, terminally differentiated
Classical monocyte
Mast cell
Progenitor cell
Group 3 innate lymphoid cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Macrophage
Gamma-delta t cell
Central memory cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta memory t cell
Immature innate lymphoid cell
Plasmablast
Cd4-positive, alpha-beta memory t cell
Cd16-negative, cd56-bright natural killer cell, human
Conventional dendritic cell
Germinal center b cell
Plasma cell
Central memory cd8-positive, alpha-beta t cell
Effector memory cd4-positive, alpha-beta t cell
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Mucosal invariant t cell
Plasmacytoid dendritic cell
Effector memory cd8-positive, alpha-beta t cell, terminally differentiated
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
B cell
Group 1 innate lymphoid cell
Tissue
Liver
Thoracic lymph node
Bone marrow
Jejunum lamina propria
Colonic epithelium
Epithelial lining fluid
Spleen
Inguinal lymph node
Jejunal epithelium
Blood
Skin of body
Mesenteric lymph node
Lamina propria of mucosa of colon
Lung
Developmental stage
64-year-old stage
68-year-old stage
Fifth decade stage
73-year-old stage
75-year-old stage
25-year-old stage
Eighth decade stage
Fourth decade stage
56-year-old stage
20-year-old stage
67-year-old stage
Sixth decade stage
23-year-old stage
27-year-old stage
48-year-old stage
33-year-old stage
Third decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
GEO series:GSE299043
Github:YosefLab/CZI-Immuneaging
HumanCellAtlas:6179c38c-9987-4e7c-a4bb-d34cf33a3c3f
CELLxGENE
1,265,624 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+31
Natural killer cell
Blood
Blood
64-year-old stage
+54
64-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Naive b cell
Cd8-positive, alpha-beta t cell
Regulatory t cell
Cd1c-positive myeloid dendritic cell
Cd14-positive monocyte
Naive thymus-derived cd8-positive, alpha-beta t cell
Memory b cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Gamma-delta t cell
T cell
Cd14-low, cd16-positive monocyte
Central memory cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta memory t cell
Mature b cell
Cd8-positive, alpha-beta cytotoxic t cell
Myeloid cell
Cd16-negative, cd56-bright natural killer cell, human
Double negative t regulatory cell
Platelet
Plasma cell
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Cd4-positive, alpha-beta cytotoxic t cell
Plasmacytoid dendritic cell
Cd141-positive myeloid dendritic cell
Innate lymphoid cell
Cd4-positive, alpha-beta t cell
Cd16-positive, cd56-dim natural killer cell, human
Pre-conventional dendritic cell
B cell
Hematopoietic stem cell
Tissue
Blood
Developmental stage
64-year-old stage
26-year-old stage
50-year-old stage
52-year-old stage
65-year-old stage
68-year-old stage
43-year-old stage
41-year-old stage
35-year-old stage
63-year-old stage
37-year-old stage
29-year-old stage
58-year-old stage
24-year-old stage
73-year-old stage
22-year-old stage
75-year-old stage
34-year-old stage
31-year-old stage
42-year-old stage
49-year-old stage
59-year-old stage
54-year-old stage
25-year-old stage
66-year-old stage
61-year-old stage
57-year-old stage
21-year-old stage
53-year-old stage
46-year-old stage
56-year-old stage
55-year-old stage
44-year-old stage
77-year-old stage
47-year-old stage
36-year-old stage
32-year-old stage
45-year-old stage
69-year-old stage
67-year-old stage
40-year-old stage
60-year-old stage
62-year-old stage
19-year-old stage
39-year-old stage
28-year-old stage
38-year-old stage
23-year-old stage
30-year-old stage
72-year-old stage
27-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
33-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
celltype.info
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
1
2
3
4
5
6
…
390
391
Close