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653
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43
Bgee
40
Cellxgene
2,045
Single cell portal
176
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2304
datasets
CELLxGENE
1,248,980 cells
•
Yazar et al., 2022
Single-cell eQTL mapping identifies cell type–specific genetic control of autoimmune disease
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+28
Innate lymphoid cell
Blood
Blood
54-year-old stage
+77
54-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Plasmablast
Effector memory cd4-positive, alpha-beta t cell
Double negative thymocyte
Peripheral blood mononuclear cell
Mucosal invariant t cell
Effector memory cd8-positive, alpha-beta t cell
Cd14-low, cd16-positive monocyte
Cd14-positive monocyte
Cd4-positive, alpha-beta cytotoxic t cell
Hematopoietic precursor cell
Central memory cd4-positive, alpha-beta t cell
Memory b cell
Dendritic cell
Gamma-delta t cell
Regulatory t cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta t cell
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Natural killer cell
Platelet
Erythrocyte
Conventional dendritic cell
Cd4-positive, alpha-beta t cell
Naive b cell
Transitional stage b cell
Tissue
Blood
Developmental stage
54-year-old stage
90-year-old stage
35-year-old stage
39-year-old stage
62-year-old stage
27-year-old stage
78-year-old stage
95-year-old stage
73-year-old stage
74-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
19-year-old stage
21-year-old stage
83-year-old stage
85-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
96-year-old stage
82-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
86-year-old stage
48-year-old stage
70-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
30-year-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
79-year-old stage
89-year-old stage
64-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
77-year-old stage
94-year-old stage
33-year-old stage
93-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
76-year-old stage
31-year-old stage
88-year-old stage
87-year-old stage
63-year-old stage
60-year-old stage
97-year-old stage
80-year-old stage
84-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
91-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
Github:powellgenomicslab/onek1k_phase1
onek1k.org
GEO series:GSE196830
HumanCellAtlas:f2078d5f-2e7d-4844-8552-f7c41a231e52
Zenodo record:5084396#.YpqJlxPMJcg
CELLxGENE
1,234,234 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+37
Innate lymphoid cell
Blood
Blood
35-year-old stage
+9
35-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Basophil mast progenitor cell
Double negative thymocyte
Mucosal invariant t cell
Common myeloid progenitor
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Cd14-low, cd16-positive monocyte
Be cell
Intermediate monocyte
Central memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
Cd14-positive, cd16-negative classical monocyte
Mature gamma-delta t cell
Axl+ dendritic cell, human
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Memory regulatory t cell
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Natural killer cell
Platelet
Erythrocyte
Cd8-positive, alpha-beta memory t cell
T cell
Cd8aa(i) thymocyte
Naive b cell
Memory ccr4-positive regulatory t cell
Naive regulatory t cell
Transitional stage b cell
Common lymphoid progenitor
Tissue
Blood
Developmental stage
35-year-old stage
27-year-old stage
26-year-old stage
36-year-old stage
30-year-old stage
29-year-old stage
28-year-old stage
31-year-old stage
37-year-old stage
34-year-old stage
Disease
Cytomegalovirus infection
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
GEO series:GSE271896
dbGaP Study:phs003841
Github:aifimmunology/sound-life-scrna-analysis
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
CELLxGENE
1,220,178 cells
•
Duran et al., 2025
A statistical framework for inferring genetic requirements from embryo-scale single-cell sequencing experiments
Explore
h5ad
Danio rerio
Danio rerio
Hepatoblast
+99
Hepatoblast
Meninx
+103
Meninx
Hatching:pec-fin
+9
Hatching:pec-fin
Normal
Normal
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Danio rerio
Cell type
Hepatoblast
Pancreatic d cell
Retinal ganglion cell
Premigratory neural crest cell
Sensory hair cell
Notochordal vacuole cell
Slow muscle cell
Schwann cell
Multiciliated epithelial cell
Odontoblast
Neural progenitor cell
Fast muscle myoblast
Kidney proximal convoluted tubule epithelial cell
Ionocyte
Pancreatic a cell
Notochordal sheath cell
Enterocyte
Endodermal cell
Neuroblast (sensu vertebrata)
Kolmer-agduhr neuron
Podocyte
Cardiac endothelial cell
Gabaergic neuron
Glial cell
Glycinergic neuron
Myeloid lineage restricted progenitor cell
Epidermal cell
Spinal cord interneuron
Taste receptor cell
Amacrine cell
Smooth muscle cell
Peridermal cell
Retina horizontal cell
Retinal bipolar neuron
Retinal progenitor cell
Melanocyte
Chondroblast
Neutrophil
Olfactory epithelial cell
Epithelial cell
Epithelial cell of distal tubule
Stromal cell
Splanchnic mesodermal cell
Primordial germ cell
Xanthoblast
Cardiac muscle cell
Purkinje cell
Mesenchymal cell
Chondrocyte
Neuromast supporting cell
Neurecto-epithelial cell
Cranial motor neuron
Epidermal mucus secreting cell
Melanoblast
Endocrine cell
Retinal pigment epithelial cell
Photoreceptor cell
Thyroid follicular cell
Motor neuron
Pericyte
Migratory cranial neural crest cell
Hepatocyte
Iridophore
Lateral motor column neuron
Goblet cell
Xanthophore cell
Mesodermal cell
Slow muscle myoblast
Muscle cell
Muscle precursor cell
Hatching gland cell
Lens fiber cell
Tendon cell
Glutamatergic neuron
Neuroplacodal cell
Macrophage
Migratory neural crest cell
Hypertrophic chondrocyte
Rohon-beard neuron
Epithelial cell of exocrine pancreas
Epithelial cell of esophagus
Nonkeratinized cell of epidermis
Erythrocyte
Type b pancreatic cell
Osteoblast
Adaxial cell
Myoblast
Mesothelial cell
Auditory epithelial supporting cell
Ectodermal cell
Notochordal cell
Pancreatic endocrine cell
Eye photoreceptor cell
Enteric neuron
Neuron
Neural crest cell
Lens epithelial cell
Connective tissue cell
Fast muscle cell
Endothelial cell
Tissue
Meninx
Genitourinary system
Gonad primordium
Midbrain
Lens vesicle
Trigeminal ganglion
Cleithrum
Head connective tissue
Cloaca
Vestibulocochlear ganglion
Outer nuclear layer of retina
Midbrain tectum
Pronephric glomerulus
Pronephric mesoderm
Periderm
Integument
Retina
Trunk neural crest
Crista ampullaris
Pectoral appendage bud
Notochord
Pigmented layer of retina
Hatching gland
Adenohypophysis
Liver
Lens of camera-type eye
Hypochord
Anterior lateral plate mesoderm
Myotome
Midbrain tegmentum
Blood
Habenula
Pectoral fin
Fast muscle tissue
Parachordal cartilage
Midbrain-hindbrain boundary
Lateral plate mesoderm
Brain
Inner nuclear layer of retina
Median fin fold
Pancreatic epithelial bud
Distal tubule
Forebrain
Neural rod
Slow muscle tissue
Somite
Cerebellum
Blood island
Macula
Floor plate
Ectoderm-derived structure
Skin epidermis
Ventricular zone
Spinal cord
Sclerotome
Epibranchial ganglion
Interrenal primordium
Lateral line
Hypaxial musculature
Taste bud
Telencephalon
Ganglionic layer of retina
Neural crest
Intestine
Pharyngeal pouch
Ear vesicle
Enteric ganglion
Proximal convoluted tubule
Pancreas
Pronephros
Pharynx
Heart
Diencephalon
Bulbus arteriosus
Esophagus
Dorsolateral placode
Lymphatic vessel endothelium
Blood vessel endothelium
Anterior segment of eyeball
Proepicardium
Cranial ganglion
Periocular mesenchyme
Craniocervical muscle
Endocardium
Zona limitans intrathalamica
Hindbrain
Leptomeninx
Semicircular canal
Corpuscles of stannius
Lateral line ganglion
Tooth placode
Thyroid follicle
Intestinal epithelium
Pharyngeal arch
Swim bladder
Multicellular anatomical structure
Endocrine pancreas
Olfactory system
Head
Posterior neural tube
Presomitic mesoderm
Liver primordium
Heart primordium
Olfactory epithelium
Developmental stage
Hatching:pec-fin
Larval:protruding-mouth
Pharyngula:prim-15
Pharyngula:prim-25
Segmentation:14-19 somites
Pharyngula:high-pec
Segmentation:26+ somites
Hatching:long-pec
Segmentation:20-25 somites
Pharyngula:prim-5
Disease
Normal
Sex
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GEO series:GSE295164
cole-trapnelllab.github.io
DOI:10.1038/s41586-023-06720-2
CELLxGENE
1,206,761 cells
•
Gong et al., 2025
Multi-omic profiling reveals age-related immune dynamics in healthy adults
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+37
Innate lymphoid cell
Blood
Blood
35-year-old stage
+11
35-year-old stage
Cytomegalovirus infection
Cytomegalovirus infection
Male
Male
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Basophil mast progenitor cell
Double negative thymocyte
Mucosal invariant t cell
Common myeloid progenitor
Cd16-positive, cd56-dim natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Cd14-low, cd16-positive monocyte
Be cell
Intermediate monocyte
Central memory cd4-positive, alpha-beta t cell
Cd4-positive, alpha-beta memory t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
Cd14-positive, cd16-negative classical monocyte
Mature gamma-delta t cell
Axl+ dendritic cell, human
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta regulatory t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Memory regulatory t cell
Cd16-negative, cd56-bright natural killer cell, human
Central memory cd8-positive, alpha-beta t cell
Natural killer cell
Platelet
Erythrocyte
Cd8-positive, alpha-beta memory t cell
T cell
Cd8aa(i) thymocyte
Naive b cell
Memory ccr4-positive regulatory t cell
Naive regulatory t cell
Transitional stage b cell
Common lymphoid progenitor
Tissue
Blood
Developmental stage
35-year-old stage
27-year-old stage
26-year-old stage
36-year-old stage
30-year-old stage
29-year-old stage
33-year-old stage
32-year-old stage
28-year-old stage
31-year-old stage
37-year-old stage
34-year-old stage
Disease
Cytomegalovirus infection
Sex
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Github:aifimmunology/IHA-Figure
apps.allenimmunology.org
CELLxGENE collection:77f9d7e9-5675-49c3-abed-ce02f39eef1b
GEO series:GSE271896
Github:aifimmunology/sound-life-scrna-analysis
dbGaP Study:phs003841
CELLxGENE
1,169,213 cells
•
Yao et al., 2021
A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation
Explore
h5ad
Mus musculus
Mus musculus
Cortical interneuron
+26
Cortical interneuron
Primary motor cortex
+16
Primary motor cortex
8-week-old stage
+2
8-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Cortical interneuron
L2/3 intratelencephalic projecting glutamatergic neuron of the primary motor cortex
L6b glutamatergic cortical neuron
Astrocyte
Lamp5 gabaergic interneuron
Sst chodl gabaergic interneuron
Corticothalamic-projecting glutamatergic cortical neuron
Vip gabaergic interneuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Oligodendrocyte
Pyramidal neuron
L6 corticothalamic-projecting glutamatergic cortical neuron
Pericyte
Hippocampal neuron
L5/6 near-projecting glutamatergic neuron of the primary motor cortex
Pvalb gabaergic interneuron
Meis2 expressing cortical gabaergic cell
L4/5 intratelencephalic projecting glutamatergic neuron of the primary motor cortex
Glutamatergic neuron
Cajal-retzius cell
Sncg gabaergic interneuron
Central nervous system macrophage
Sst gabaergic interneuron
L5 extratelencephalic projecting glutamatergic cortical neuron
L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex
Endothelial cell
Vascular leptomeningeal cell (mmus)
Tissue
Primary motor cortex
Medial orbital frontal cortex
Primary visual cortex
Primary somatosensory cortex
Posterior parietal association areas
Lateral visual area
Retrosplenial granular cortex
Temporal cortex
Auditory cortex
Agranular insular cortex
Entorhinal cortex
Hippocampal formation
Anterior cingulate cortex
Parietal cortex
Visual cortex
Frontal lobe
Subicular complex
Developmental stage
8-week-old stage
7-week-old stage
9-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
Allen Brain Map Atlases:rnaseq/mouse-whole-cortex-and-hippocampus-10x
GEO series:GSE185862
NeMo archive:dat-jb2f34y
Allen Brain Map Atlases:rnaseq/mouse-whole-cortex-and-hippocampus-smart-seq
CELLxGENE
1,136,218 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Small intestine goblet cell
+178
Small intestine goblet cell
Vasculature
+74
Vasculature
74-year-old stage
+18
74-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Small intestine goblet cell
Fibroblast
Pancreatic d cell
Salivary gland cell
Pancreatic pp cell
Serous cell of epithelium of trachea
Innate lymphoid cell
Enteroendocrine cell
Regular atrial cardiac myocyte
Pulmonary ionocyte
Retinal ganglion cell
Pancreatic ductal cell
Enterocyte of epithelium proper of jejunum
Slow muscle cell
Schwann cell
Luminal epithelial cell of mammary gland
Endothelial cell of vascular tree
Common myeloid progenitor
Multiciliated columnar cell of tracheobronchial tree
Intestinal crypt stem cell of small intestine
Myeloid cell
Ionocyte
Pancreatic a cell
Serous cell of epithelium of bronchus
Pancreatic acinar cell
Spermatid
Mast cell
Langerhans cell
Stratified squamous epithelial cell
Acinar cell
Luminal cell of prostate epithelium
Endothelial cell of arteriole
Keratocyte
Paneth cell of colon
Cardiac endothelial cell
Glial cell
Paneth cell of epithelium of small intestine
Granulocyte
Vein endothelial cell
Mesenchymal stem cell
Intermediate monocyte
Taste receptor cell
Neuro-medullary thymic epithelial cell
Progenitor cell of mammary luminal epithelium
Epithelial cell of uterus
Smooth muscle cell
Intestinal tuft cell
Myeloid dendritic cell
Hematopoietic precursor cell
Retina horizontal cell
Mural cell
Hematopoietic cell
Retinal bipolar neuron
Basophil
Melanocyte
Enterocyte of epithelium proper of small intestine
Neutrophil
Tracheal goblet cell
Epithelial cell
Enteroglial cell
Conjunctival epithelial cell
Stromal cell
Mononuclear phagocyte
Respiratory tract goblet cell
Type l enteroendocrine cell
Interstitial cell of cajal
Cd8-positive, alpha-beta thymocyte
Oocyte
Enterocyte of epithelium of large intestine
Enterochromaffin-like cell
Plasma cell
Colon endothelial cell
B cell
Gamma-delta t cell
Regulatory t cell
Mesenchymal cell
Transit amplifying cell of small intestine
Myoepithelial cell
Leydig cell
Intrahepatic cholangiocyte
Vascular associated smooth muscle cell
Large intestine goblet cell
Capillary endothelial cell
Erythroid progenitor cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Medullary thymic epithelial cell
Retinal pigment epithelial cell
Mucus secreting cell
Enterocyte of epithelium proper of ileum
Myeloid leukocyte
Pericyte
Enterocyte of epithelium proper of duodenum
Spermatogonium
Myofibroblast cell
Club cell
Activated cd4-positive, alpha-beta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Ovarian surface epithelial cell
Hepatocyte
Vestibular dark cell
Hematopoietic stem cell
Non-classical monocyte
Kidney epithelial cell
Stromal cell of ovary
Colon macrophage
Pulmonary alveolar type 2 cell
Plasmacytoid dendritic cell
Skeletal muscle satellite stem cell
Erythroid lineage cell
Glandular secretory epithelial cell
Activated cd8-positive, alpha-beta t cell
Muscle cell
Peritubular myoid cell
Thymic fibroblast type 1
Leukocyte
Adipocyte
Alveolar adventitial fibroblast
Duct epithelial cell
Cd8-positive, alpha-beta t cell
Endothelial cell of venule
Basal cell of prostate epithelium
Myo-medullary thymic epithelial cell
Pulmonary alveolar type 1 cell
Blood vessel smooth muscle cell
Endothelial cell of lymphatic vessel
Tendon cell
Natural killer cell
Macrophage
Theca cell
Tuft cell of colon
Thymic fibroblast type 2
Hepatic stellate cell
Ciliated epithelial cell
Sebocyte
Platelet
Myometrial cell
Bladder urothelial cell
Transit amplifying cell of colon
Bronchial smooth muscle cell
Erythrocyte
Best4+ enterocyte
Type b pancreatic cell
Mesenchymal stem cell of adipose tissue
Radial glial cell
Thymocyte
Monocyte
Mueller cell
Cd4-positive, alpha-beta thymocyte
Mature nk t cell
Basal cell
Corneal epithelial cell
Supporting cell of vestibular epithelium
Male germ cell
Classical monocyte
Retinal blood vessel endothelial cell
Mesothelial cell
Adventitial cell
Pancreatic stellate cell
Cd4-positive, alpha-beta t cell
Microglial cell
Fibroblast of cardiac tissue
T cell
Epithelial fate stem cell
Spermatocyte
Eye photoreceptor cell
Lung multiciliated epithelial cell
Neuron
Intestinal crypt stem cell of colon
Acinar cell of salivary gland
Tongue muscle cell
Enteroendocrine cell of small intestine
T follicular helper cell
Connective tissue cell
Fast muscle cell
Tissue-resident macrophage
Fibroblast of breast
Endothelial cell
Ventricular cardiac muscle cell
Endothelial cell of artery
Tissue
Vasculature
Skin of body
Trachea
Cardiac ventricle
Chorioretinal region
Myometrium
Brown adipose tissue
Left coronary artery
Lacrimal gland
Stomach
Cortex of kidney
Ascending colon
Endometrium
Sigmoid colon
Lung
Crista ampullaris
Bladder organ
Aorta
Subcutaneous adipose tissue
Mesenteric lymph node
Liver
Mucosa of stomach
Conjunctiva
Exocrine pancreas
Ileum
Blood
Stomach smooth muscle
Right cardiac atrium
Muscle of abdomen
Cornea
Inferior vena cava
Right ovary
Prostate gland
Skin of chest
Abdominal aorta
Large intestine
Bone marrow
Sclera
Cardiac atrium
Tongue
Posterior part of tongue
Kidney
Sublingual gland
Adipose tissue
Eyelid
Ovary
Spleen
Anterior part of tongue
Thoracic aorta
Uterus
Muscle of pelvic diaphragm
Small intestine
Muscularis mucosae of stomach
Thymus
Left ovary
Ocular surface region
Buccal mucosa
Posterior segment of eyeball
Heart
Skin of abdomen
Retinal neural layer
Jejunum
Heart right ventricle
Anterior segment of eyeball
Coronary artery
Duodenum
Parotid gland
Mammary gland
Submandibular gland
Testis
Inguinal lymph node
Lymph node
Endocrine pancreas
Eye
Utricle of membranous labyrinth
Developmental stage
74-year-old stage
26-year-old stage
61-year-old stage
57-year-old stage
42-year-old stage
36-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
59-year-old stage
55-year-old stage
22-year-old stage
33-year-old stage
69-year-old stage
60-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
67-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Smart-seq3
10x 5' v2
Smart-seq2
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
DOI:10.1101/2024.12.03.626516
CELLxGENE
1,135,677 cells
•
Ruiz-Moreno et al., 2022
Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte
+17
Astrocyte
Right temporal lobe
+14
Right temporal lobe
54-year-old stage
+40
54-year-old stage
Glioblastoma
Glioblastoma
Female
+1
Female
Microwell-seq
+8
Microwell-seq
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Astrocyte
Mast cell
Mural cell
Neutrophil
Oligodendrocyte precursor cell
Malignant cell
Plasma cell
Oligodendrocyte
Dendritic cell
B cell
Mature t cell
Natural killer cell
Macrophage
Radial glial cell
Monocyte
Microglial cell
Neuron
Endothelial cell
Tissue
Right temporal lobe
Left frontal lobe
Basal ganglion
Parietal lobe
Right parietal lobe
Temporal lobe
Brain
Forebrain
Right occipital lobe
Occipital lobe
Left temporal lobe
Left parietal lobe
Temporoparietal junction
Frontal lobe
Right frontal lobe
Developmental stage
54-year-old stage
35-year-old stage
Adult stage
62-year-old stage
78-year-old stage
74-year-old stage
72-year-old stage
53-year-old stage
21-year-old stage
83-year-old stage
61-year-old stage
57-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
48-year-old stage
70-year-old stage
45-year-old stage
59-year-old stage
55-year-old stage
58-year-old stage
50-year-old stage
51-year-old stage
64-year-old stage
68-year-old stage
66-year-old stage
77-year-old stage
33-year-old stage
69-year-old stage
76-year-old stage
63-year-old stage
60-year-old stage
80-year-old stage
56-year-old stage
46-year-old stage
24-year-old stage
67-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
Disease
Glioblastoma
Sex
Female
Male
Technology
Microwell-seq
Bd rhapsody whole transcriptome analysis
Cel-seq2
10x 3' v3
Strt-seq
Drop-seq
Smart-seq2
10x 5' v1
10x 3' v2
Suspension type
Cell
Nucleus
Related Links
Zenodo record:6962901#.YwzPKezMLDA
Github:ccruizm/GBmap
CELLxGENE
1,134,282 cells
•
Chiou et al., 2023
A single-cell multi-omic atlas spanning the adult rhesus macaque brain
Explore
h5ad
Macaca mulatta
Macaca mulatta
Glutamatergic neuron
Glutamatergic neuron
Primary motor cortex
+26
Primary motor cortex
Prime adult stage
+1
Prime adult stage
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Macaca mulatta
Cell type
Glutamatergic neuron
Tissue
Primary motor cortex
Perirhinal cortex
Inferior temporal gyrus
Midbrain
Cerebrocerebellum
Primary visual cortex
Nucleus accumbens
Dorsolateral prefrontal cortex
Primary somatosensory cortex
Medial dorsal nucleus of thalamus
Lateral geniculate body
Ventral lateral nucleus of thalamus
Amygdala
Brodmann (1909) area 19
Inferior parietal cortex
Primary auditory cortex
Cerebellar vermis
Pons
Entorhinal cortex
Hippocampal formation
Anterior cingulate cortex
Prefrontal cortex
Superior parietal cortex
Superior temporal sulcus
Corpus callosum
Medulla oblongata
Head of caudate nucleus
Developmental stage
Prime adult stage
Juvenile stage
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
DOI:10.17504/protocols.io.9yih7ue
NeMo archive:dat-rtmm5q2
Zenodo record:7925943
Zenodo record:7925933
Zenodo record:7925925
CELLxGENE
1,102,250 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
+14
Fibroblast
Eye trabecular meshwork
+2
Eye trabecular meshwork
54-year-old stage
+42
54-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Pigmented ciliary epithelial cell
Schwann cell
Mast cell
Myelinating schwann cell
Melanocyte
B cell
Blood vessel endothelial cell
Trabecular meshwork cell
Pericyte
Lymphocyte
Macrophage
Non-pigmented ciliary epithelial cell
Ciliary muscle cell
Endothelial cell
Tissue
Eye trabecular meshwork
Uvea
Ciliary body
Developmental stage
54-year-old stage
62-year-old stage
27-year-old stage
78-year-old stage
80 year-old and over stage
73-year-old stage
72-year-old stage
53-year-old stage
21-year-old stage
85-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
82-year-old stage
17-year-old stage
52-year-old stage
70-year-old stage
30-year-old stage
58-year-old stage
15-year-old stage
18-year-old stage
50-year-old stage
51-year-old stage
64-year-old stage
68-year-old stage
66-year-old stage
77-year-old stage
69-year-old stage
76-year-old stage
63-year-old stage
60-year-old stage
56-year-old stage
46-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
20-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
16-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
celltype.info
CELLxGENE
1,077,238 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Iga plasma cell
+90
Iga plasma cell
Epithelium of rectum
+35
Epithelium of rectum
54-year-old stage
+84
54-year-old stage
Normal
Normal
Female
+1
Female
10x 5' transcription profiling
+5
10x 5' transcription profiling
Cell
Cell
Organism
Homo sapiens
Cell type
Iga plasma cell
Fibroblast
Afferent neuron
Enteroendocrine cell
Plasmablast
Mucosal invariant t cell
Inhibitory motor neuron
Transit amplifying cell
Keratinocyte
Ionocyte
Germinal center b cell
Cd16-positive, cd56-dim natural killer cell, human
Mast cell
Langerhans cell
Enterocyte
Igg plasma cell
Type x enteroendocrine cell
Effector memory cd8-positive, alpha-beta t cell
Dendritic cell, human
Neuroblast (sensu vertebrata)
Type ec enteroendocrine cell
Vein endothelial cell
Type g enteroendocrine cell
Fibroblastic reticular cell
Tuft cell of small intestine
Smooth muscle cell
Melanocyte
Pro-b cell
Epithelial cell
Enteroglial cell
Cd4-positive, alpha-beta memory t cell
Interstitial cell of cajal
Memory b cell
Follicular dendritic cell
Gamma-delta t cell
Regulatory t cell
Mesenchymal cell
T-helper 17 cell
Neutrophil progenitor cell
Megakaryocyte
Myoepithelial cell
Vascular associated smooth muscle cell
Capillary endothelial cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Paneth cell
Motor neuron
Pericyte
Salivary gland glandular cell
Cycling basal cell
Myofibroblast cell
Angiogenic pericyte
Fibroblast of gingiva
Glandular cell of esophagus
Naive thymus-derived cd8-positive, alpha-beta t cell
Precursor b cell
Plasmacytoid dendritic cell, human
Intestine goblet cell
Interneuron
Mesodermal cell
Muscle cell
Eosinophil
Progenitor cell
Igm plasma cell
Gastrointestinal tract (lamina propria) macrophage
Endothelial cell of lymphatic vessel
Trem2-positive macrophage
Cd16-negative, cd56-bright natural killer cell, human
Mucous neck cell of gastric gland
Macrophage
Foveolar cell of stomach
Colonocyte
Erythrocyte
Best4+ enterocyte
Group 3 innate lymphoid cell
Conventional dendritic cell
Monocyte
Parietal cell
Intestinal crypt stem cell
Basal cell
Cd8-positive, alpha-beta memory t cell
Mesothelial cell
Cycling t cell
Enteric neuron
Peptic cell
Naive b cell
Acinar cell of salivary gland
Immature pericyte
M cell of gut
T follicular helper cell
Endothelial cell
Endothelial cell of artery
Tissue
Epithelium of rectum
Ileum lamina propria
Ileal epithelium
Epithelium of esophagus
Stomach
Ascending colon
Sigmoid colon
Transverse colon
Pyloric antrum
Caecum
Colonic epithelium
Colonic mucosa
Mesenteric lymph node
Ileum
Vermiform appendix
Descending colon
Rectosigmoid junction
Small intestine
Duodenal epithelium
Periodontium
Body of stomach
Intestine
Buccal mucosa
Esophagus
Jejunum
Epithelium of stomach
Rectum
Labial gland
Duodenum
Pylorus
Gingiva
Epithelium of small intestine
Parotid gland
Lamina propria of mucosa of colon
Lamina propria of small intestine
Colon
Developmental stage
54-year-old stage
35-year-old stage
Adult stage
39-year-old stage
62-year-old stage
Carnegie stage 19
74-year-old stage
26-year-old stage
72-year-old stage
9-year-old stage
21st week post-fertilization stage
Third decade stage
Carnegie stage 18
10th week post-fertilization stage
21-year-old stage
85-year-old stage
81-year-old stage
61-year-old stage
57-year-old stage
Juvenile stage (5-14 yo)
Sixth decade stage
Newborn stage (0-28 days)
Embryonic stage
4-year-old stage
16th week post-fertilization stage
Fourth decade stage
52-year-old stage
86-year-old stage
48-year-old stage
Carnegie stage 22
19th week post-fertilization stage
70-year-old stage
6-year-old stage
12-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
Eighth decade stage
30-year-old stage
10-year-old stage
2-month-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
15th week post-fertilization stage
77-year-old stage
11th week post-fertilization stage
13th week post-fertilization stage
33-year-old stage
32-year-old stage
12th week post-fertilization stage
28-year-old stage
76-year-old stage
Young adult stage
Fifth decade stage
31-year-old stage
Carnegie stage 17
87-year-old stage
63-year-old stage
60-year-old stage
80-year-old stage
Prime adult stage
18th week post-fertilization stage
84-year-old stage
56-year-old stage
37-year-old stage
Pediatric stage
9th week post-fertilization stage
46-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
65-year-old stage
17th week post-fertilization stage
Seventh decade stage
44-year-old stage
34-year-old stage
Carnegie stage 16
Disease
Normal
Sex
Female
Male
Technology
10x 5' transcription profiling
10x 3' v3
10x 3' v1
10x 5' v2
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
Single Cell Portal
1,065,475 cells
Explore
Mus musculus musculus
Mus musculus musculus
Fibroblast
+9
Fibroblast
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Mus musculus musculus
Cell type
Fibroblast
Astrocyte
Glial cell
Brain microvascular endothelial cell
Oligodendrocyte precursor cell
Oligodendrocyte
Ependymal cell
Macrophage
Microglial cell
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
1,058,909 cells
•
Kock et al., 2025
Asian diversity in human immune cells
Explore
h5ad
Homo sapiens
Homo sapiens
Innate lymphoid cell
+32
Innate lymphoid cell
Blood
Blood
54-year-old stage
+53
54-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Innate lymphoid cell
Effector memory cd4-positive, alpha-beta t cell
Mucosal invariant t cell
Cd16-positive, cd56-dim natural killer cell, human
Cd14-low, cd16-positive monocyte
Cd14-positive monocyte
Cd4-positive, alpha-beta cytotoxic t cell
Central memory cd4-positive, alpha-beta t cell
Cd141-positive myeloid dendritic cell
Memory b cell
Plasma cell
Dendritic cell
B cell
Gamma-delta t cell
Regulatory t cell
Cd1c-positive myeloid dendritic cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Plasmacytoid dendritic cell
Cd8-positive, alpha-beta t cell
Cd16-negative, cd56-bright natural killer cell, human
Natural killer cell
Mature b cell
Double negative t regulatory cell
Platelet
Erythrocyte
Conventional dendritic cell
Monocyte
Cd8-positive, alpha-beta memory t cell
Cd4-positive, alpha-beta t cell
T cell
Naive b cell
Cd8-positive, alpha-beta cytotoxic t cell
Tissue
Blood
Developmental stage
54-year-old stage
35-year-old stage
39-year-old stage
62-year-old stage
27-year-old stage
73-year-old stage
26-year-old stage
72-year-old stage
53-year-old stage
19-year-old stage
21-year-old stage
61-year-old stage
57-year-old stage
49-year-old stage
42-year-old stage
36-year-old stage
52-year-old stage
48-year-old stage
40-year-old stage
38-year-old stage
45-year-old stage
41-year-old stage
59-year-old stage
30-year-old stage
55-year-old stage
23-year-old stage
58-year-old stage
75-year-old stage
22-year-old stage
50-year-old stage
51-year-old stage
64-year-old stage
68-year-old stage
29-year-old stage
66-year-old stage
33-year-old stage
69-year-old stage
32-year-old stage
28-year-old stage
31-year-old stage
63-year-old stage
60-year-old stage
25-year-old stage
56-year-old stage
37-year-old stage
46-year-old stage
24-year-old stage
67-year-old stage
43-year-old stage
65-year-old stage
71-year-old stage
44-year-old stage
34-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
Suspension type
Cell
Related Links
HumanCellAtlas:f0f89c14-7460-4bab-9d42-22228a91f185
Github:prabhakarlab/AIDA_Phase1
Zenodo record:14722572
HumanCellAtlas:35d5b057-3daf-4ccd-8112-196194598893
celltype.info
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