Homo sapiens

Angiogenic pericyte Germinal center b cell Muscle cell Cycling t cell Dendritic cell, human Igm plasma cell Intestine goblet cell Endothelial cell of lymphatic vessel Erythrocyte Follicular dendritic cell Gamma-delta t cell Best4+ enterocyte Endothelial cell Afferent neuron Pro-b cell Interstitial cell of cajal Type g enteroendocrine cell Mast cell Iga plasma cell Enteric neuron Immature pericyte Basal cell Endothelial cell of artery Capillary endothelial cell Melanocyte Ionocyte Smooth muscle cell Paneth cell Enteroglial cell Plasmacytoid dendritic cell, human Epithelial cell Inhibitory motor neuron Peptic cell Igg plasma cell Fibroblast of gingiva Precursor b cell Enteroendocrine cell Glandular cell of esophagus Mesodermal cell Cd8-positive, alpha-beta memory t cell Myoepithelial cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell T-helper 17 cell Macrophage Intestinal crypt stem cell Memory b cell Cd16-positive, cd56-dim natural killer cell, human Regulatory t cell Neuroblast (sensu vertebrata) Type ec enteroendocrine cell Fibroblastic reticular cell Plasmablast Parietal cell Tuft cell of small intestine Keratinocyte Trem2-positive macrophage Acinar cell of salivary gland Enterocyte Salivary gland glandular cell Vein endothelial cell Mesenchymal cell Gastrointestinal tract (lamina propria) macrophage Motor neuron Neutrophil progenitor cell Eosinophil Megakaryocyte Langerhans cell Interneuron Transit amplifying cell T follicular helper cell Cd4-positive, alpha-beta memory t cell Mesothelial cell Pericyte Mucous neck cell of gastric gland Progenitor cell Type x enteroendocrine cell Foveolar cell of stomach Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Monocyte Cycling basal cell Vascular associated smooth muscle cell Naive b cell Myofibroblast cell Conventional dendritic cell Fibroblast Colonocyte Cd16-negative, cd56-bright natural killer cell, human M cell of gut Effector memory cd8-positive, alpha-beta t cell

Ascending colon Colonic mucosa Stomach Duodenum Colonic epithelium Ileal epithelium Rectosigmoid junction Pyloric antrum Caecum Small intestine Gingiva Ileum Ileum lamina propria Lamina propria of mucosa of colon Colon Epithelium of rectum Lamina propria of small intestine Epithelium of esophagus Intestine Buccal mucosa Body of stomach Vermiform appendix Epithelium of small intestine Pylorus Rectum Esophagus Jejunum Duodenal epithelium Transverse colon Periodontium Parotid gland Descending colon Sigmoid colon Labial gland Epithelium of stomach Mesenteric lymph node

66-year-old stage 69-year-old stage Carnegie stage 19 37-year-old stage 75-year-old stage Pediatric stage 19th week post-fertilization stage 21-year-old stage 13-year-old stage 21st week post-fertilization stage 34-year-old stage 65-year-old stage 26-year-old stage 43-year-old stage Sixth decade stage 87-year-old stage 13th week post-fertilization stage 85-year-old stage 61-year-old stage 2-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 56-year-old stage Fifth decade stage 55-year-old stage 84-year-old stage 15th week post-fertilization stage 50-year-old stage 80-year-old stage 28-year-old stage 51-year-old stage 17th week post-fertilization stage 57-year-old stage 12-year-old stage 72-year-old stage 12th week post-fertilization stage Third decade stage 16th week post-fertilization stage 81-year-old stage 9th week post-fertilization stage 74-year-old stage 9-year-old stage 10th week post-fertilization stage 14-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage Seventh decade stage 58-year-old stage Embryonic stage 59-year-old stage Adult stage 67-year-old stage 18th week post-fertilization stage Carnegie stage 17 2-month-old stage 32-year-old stage 77-year-old stage 33-year-old stage Carnegie stage 22 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 31-year-old stage Fourth decade stage 22-year-old stage Newborn stage (0-28 days) 63-year-old stage Carnegie stage 16 Eighth decade stage 76-year-old stage Prime adult stage 5-year-old stage 11-year-old stage 6-year-old stage Young adult stage 10-year-old stage Carnegie stage 18 4-year-old stage 11th week post-fertilization stage Juvenile stage (5-14 yo)

Gastric cancer Inflammatory bowel disease Colorectal cancer Ulcerative colitis Normal Crohn disease

Female Male

10x 3' v1 10x 5' v2 10x 5' transcription profiling 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell T cell Cd1c-positive myeloid dendritic cell Mature gamma-delta t cell Natural killer cell Erythrocyte Platelet Cd141-positive myeloid dendritic cell Effector memory cd4-positive, alpha-beta t cell Intermediate monocyte Cd8aa(i) thymocyte Plasmacytoid dendritic cell Basophil mast progenitor cell Cd8-positive, alpha-beta memory t cell Be cell Memory regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Axl+ dendritic cell, human Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Common myeloid progenitor Plasma cell Naive regulatory t cell Memory ccr4-positive regulatory t cell Cd14-low, cd16-positive monocyte Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Common lymphoid progenitor Mucosal invariant t cell Cd8-positive, alpha-beta regulatory t cell Transitional stage b cell Cd14-positive, cd16-negative classical monocyte Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

65-year-old stage 61-year-old stage 56-year-old stage 55-year-old stage 57-year-old stage 58-year-old stage 59-year-old stage 64-year-old stage 62-year-old stage 60-year-old stage 63-year-old stage

Normal

Female

10x 3' v3

Cell

Homo sapiens

T cell L2/3 intratelencephalic projecting glutamatergic neuron L5/6 near-projecting glutamatergic neuron Natural killer cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte L6b glutamatergic neuron of the primary motor cortex Vascular leptomeningeal cell Smooth muscle cell Lamp5 gabaergic interneuron Microglial cell Vip gabaergic interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron Plasma cell L5 extratelencephalic projecting glutamatergic cortical neuron L6 corticothalamic-projecting glutamatergic cortical neuron Pvalb gabaergic interneuron B cell Pericyte Perivascular macrophage L6 intratelencephalic projecting glutamatergic neuron Astrocyte Sst gabaergic interneuron Gabaergic neuron

Dorsolateral prefrontal cortex

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage 21-year-old stage 13-year-old stage 34-year-old stage 65-year-old stage 42-year-old stage 26-year-old stage 89-year-old stage 43-year-old stage 71-year-old stage 85-year-old stage 53-year-old stage 61-year-old stage 2-year-old stage 88-year-old stage 52-year-old stage 54-year-old stage 3-month-old stage 48-year-old stage 30-year-old stage 44-year-old stage 17-year-old stage 29-year-old stage 38-year-old stage 56-year-old stage 8-year-old stage 55-year-old stage 84-year-old stage 15-year-old stage 50-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 12-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 6-month-old stage 80 year-old and over stage 49-year-old stage 14-year-old stage 24-year-old stage 16-year-old stage 23-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 25-year-old stage 67-year-old stage 2-month-old stage 3-year-old stage 32-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 18-year-old stage 31-year-old stage 36-year-old stage 1-month-old stage 22-year-old stage 19-year-old stage 63-year-old stage 20-year-old stage 47-year-old stage 4-month-old stage 76-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage 5-year-old stage 27-year-old stage 6-year-old stage 40-year-old stage 10-year-old stage 4-year-old stage

Type 1 diabetes mellitus Atherosclerosis Normal Type 2 diabetes mellitus

Female Male

10x 3' v3

Nucleus

Homo sapiens

Central memory cd4-positive, alpha-beta t cell T cell Cd1c-positive myeloid dendritic cell Mature gamma-delta t cell Natural killer cell Erythrocyte Platelet Cd141-positive myeloid dendritic cell Effector memory cd4-positive, alpha-beta t cell Intermediate monocyte Cd8aa(i) thymocyte Plasmacytoid dendritic cell Basophil mast progenitor cell Cd8-positive, alpha-beta memory t cell Be cell Memory regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Axl+ dendritic cell, human Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Common myeloid progenitor Plasma cell Naive regulatory t cell Memory ccr4-positive regulatory t cell Cd14-low, cd16-positive monocyte Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Common lymphoid progenitor Mucosal invariant t cell Cd8-positive, alpha-beta regulatory t cell Transitional stage b cell Cd14-positive, cd16-negative classical monocyte Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

66-year-old stage 65-year-old stage 56-year-old stage 55-year-old stage 57-year-old stage 58-year-old stage 59-year-old stage 64-year-old stage 60-year-old stage

Cytomegalovirus infection

Male

10x 3' v3

Cell

Homo sapiens

Neutrophil Club cell Cd1c-positive myeloid dendritic cell Stromal cell Natural killer cell Endothelial cell of lymphatic vessel Mast cell Cd8-positive, alpha-beta t cell Capillary endothelial cell Classical monocyte Smooth muscle cell Plasmacytoid dendritic cell Bronchus fibroblast of lung Macrophage Regulatory t cell Pulmonary alveolar type 1 cell Myeloid cell Fibroblast of lung Alveolar macrophage Plasma cell Cd4-positive, alpha-beta t cell Vein endothelial cell Malignant cell Mesothelial cell B cell Pericyte Pulmonary artery endothelial cell Epithelial cell of lung Multiciliated epithelial cell Conventional dendritic cell Dendritic cell Pulmonary alveolar type 2 cell Non-classical monocyte

Pleural effusion Lung Liver Brain Adrenal tissue Lymph node

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage 21-year-old stage 65-year-old stage 42-year-old stage 26-year-old stage 43-year-old stage 71-year-old stage 53-year-old stage 61-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 29-year-old stage 56-year-old stage 55-year-old stage 82-year-old stage 50-year-old stage 90-year-old stage 80-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 74-year-old stage 49-year-old stage 23-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 25-year-old stage 67-year-old stage 32-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 31-year-old stage 36-year-old stage 22-year-old stage 63-year-old stage 20-year-old stage 47-year-old stage 76-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage 40-year-old stage

Lung adenocarcinoma Chronic obstructive pulmonary disease Squamous cell lung carcinoma Normal Non-small cell lung carcinoma

Female Male

Gexscope technology 10x 3' v1 Bd rhapsody whole transcriptome analysis Indrop 10x 5' v1 Smart-seq2 10x 3' v3 Drop-seq 10x 3' v2

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell Germinal center b cell Gamma-delta t cell Mast cell Effector memory cd4-positive, alpha-beta t cell Classical monocyte Plasmacytoid dendritic cell Cd8-positive, alpha-beta memory t cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell, terminally differentiated Macrophage Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd4-positive, cd25-positive, alpha-beta regulatory t cell Memory b cell Cd16-positive, cd56-dim natural killer cell, human Immature innate lymphoid cell Group 1 innate lymphoid cell Plasmablast Plasma cell Cd4-positive, alpha-beta memory t cell B cell Progenitor cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Central memory cd8-positive, alpha-beta t cell Naive b cell Conventional dendritic cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Non-classical monocyte

Skin of body Lung Inguinal lymph node Colonic epithelium Jejunal epithelium Epithelial lining fluid Liver Thoracic lymph node Lamina propria of mucosa of colon Spleen Jejunum lamina propria Blood Bone marrow Mesenteric lymph node

75-year-old stage Sixth decade stage 68-year-old stage 48-year-old stage 56-year-old stage Fifth decade stage Third decade stage 23-year-old stage 25-year-old stage 67-year-old stage 33-year-old stage 64-year-old stage Fourth decade stage 20-year-old stage Eighth decade stage 73-year-old stage 27-year-old stage

Normal

Female Male

10x 5' v2 10x 3' v3

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell T cell Cd1c-positive myeloid dendritic cell Natural killer cell Double negative t regulatory cell Gamma-delta t cell Cd8-positive, alpha-beta t cell Platelet Cd141-positive myeloid dendritic cell Effector memory cd4-positive, alpha-beta t cell Pre-conventional dendritic cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta memory t cell Cd4-positive, alpha-beta cytotoxic t cell Cd8-positive, alpha-beta cytotoxic t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Regulatory t cell Mature b cell Myeloid cell Hematopoietic stem cell Plasma cell Cd4-positive, alpha-beta t cell Cd14-positive monocyte Cd14-low, cd16-positive monocyte B cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Naive b cell Cd16-negative, cd56-bright natural killer cell, human

Blood

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage 21-year-old stage 34-year-old stage 65-year-old stage 42-year-old stage 26-year-old stage 43-year-old stage 71-year-old stage 53-year-old stage 61-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 38-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 49-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 25-year-old stage 67-year-old stage 32-year-old stage 77-year-old stage 33-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 46-year-old stage 60-year-old stage 31-year-old stage 36-year-old stage 22-year-old stage 19-year-old stage 63-year-old stage 47-year-old stage 73-year-old stage 27-year-old stage 40-year-old stage

Normal

Female Male

10x 5' v2

Cell

Homo sapiens

Natural killer cell Cd8-positive, alpha-beta t cell Classical monocyte Plasmacytoid dendritic cell Lymphocyte Plasmablast Cd4-positive, alpha-beta t cell B cell Progenitor cell Conventional dendritic cell Non-classical monocyte

Blood

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage 21-year-old stage 34-year-old stage 65-year-old stage 42-year-old stage 26-year-old stage 43-year-old stage 71-year-old stage 53-year-old stage 61-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 38-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 74-year-old stage 49-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 25-year-old stage 32-year-old stage 33-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 31-year-old stage 36-year-old stage 22-year-old stage 63-year-old stage 20-year-old stage 47-year-old stage 73-year-old stage 83-year-old stage 27-year-old stage 40-year-old stage

Systemic lupus erythematosus Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell Natural killer cell Erythrocyte Gamma-delta t cell Hematopoietic precursor cell Cd8-positive, alpha-beta t cell Platelet Peripheral blood mononuclear cell Effector memory cd4-positive, alpha-beta t cell Plasmacytoid dendritic cell Cd4-positive, alpha-beta cytotoxic t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Innate lymphoid cell Regulatory t cell Plasmablast Cd4-positive, alpha-beta t cell Cd14-positive monocyte Cd14-low, cd16-positive monocyte Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Transitional stage b cell Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Conventional dendritic cell Dendritic cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

66-year-old stage 69-year-old stage 37-year-old stage 75-year-old stage 91-year-old stage 21-year-old stage 34-year-old stage 65-year-old stage 42-year-old stage 26-year-old stage 89-year-old stage 43-year-old stage 93-year-old stage 87-year-old stage 71-year-old stage 85-year-old stage 53-year-old stage 61-year-old stage 88-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 38-year-old stage 56-year-old stage 55-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 90-year-old stage 80-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 97-year-old stage 49-year-old stage 24-year-old stage 23-year-old stage 95-year-old stage 35-year-old stage 58-year-old stage 59-year-old stage 25-year-old stage 67-year-old stage 32-year-old stage 77-year-old stage 33-year-old stage 64-year-old stage 94-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 31-year-old stage 36-year-old stage 22-year-old stage 19-year-old stage 63-year-old stage 20-year-old stage 47-year-old stage 76-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage 27-year-old stage 40-year-old stage 96-year-old stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell T cell Cd1c-positive myeloid dendritic cell Mature gamma-delta t cell Natural killer cell Erythrocyte Platelet Cd141-positive myeloid dendritic cell Effector memory cd4-positive, alpha-beta t cell Intermediate monocyte Cd8aa(i) thymocyte Plasmacytoid dendritic cell Basophil mast progenitor cell Cd8-positive, alpha-beta memory t cell Be cell Memory regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Axl+ dendritic cell, human Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Common myeloid progenitor Plasma cell Naive regulatory t cell Memory ccr4-positive regulatory t cell Cd14-low, cd16-positive monocyte Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Common lymphoid progenitor Mucosal invariant t cell Cd8-positive, alpha-beta regulatory t cell Transitional stage b cell Cd14-positive, cd16-negative classical monocyte Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

37-year-old stage 34-year-old stage 26-year-old stage 30-year-old stage 29-year-old stage 28-year-old stage 35-year-old stage 31-year-old stage 36-year-old stage 27-year-old stage

Cytomegalovirus infection

Female

10x 3' v3

Cell

Danio rerio

Fast muscle cell Osteoblast Neutrophil Podocyte Muscle cell Adaxial cell Melanoblast Cardiac endothelial cell Hepatocyte Stromal cell Slow muscle myoblast Glutamatergic neuron Erythrocyte Nonkeratinized cell of epidermis Slow muscle cell Kolmer-agduhr neuron Olfactory epithelial cell Endothelial cell Retinal ganglion cell Retinal pigment epithelial cell Myeloid lineage restricted progenitor cell Hepatoblast Peridermal cell Ectodermal cell Hypertrophic chondrocyte Enteric neuron Spinal cord interneuron Tendon cell Migratory cranial neural crest cell Neuromast supporting cell Premigratory neural crest cell Schwann cell Taste receptor cell Melanocyte Ionocyte Smooth muscle cell Notochordal cell Epithelial cell Neuroplacodal cell Neural crest cell Connective tissue cell Muscle precursor cell Pancreatic endocrine cell Pancreatic a cell Sensory hair cell Xanthophore cell Mesodermal cell Splanchnic mesodermal cell Goblet cell Chondroblast Retinal bipolar neuron Hatching gland cell Photoreceptor cell Xanthoblast Macrophage Endocrine cell Notochordal sheath cell Pancreatic d cell Cranial motor neuron Rohon-beard neuron Migratory neural crest cell Neuroblast (sensu vertebrata) Lateral motor column neuron Glial cell Enterocyte Odontoblast Neurecto-epithelial cell Type b pancreatic cell Mesenchymal cell Fast muscle myoblast Motor neuron Retina horizontal cell Epithelial cell of distal tubule Lens epithelial cell Amacrine cell Retinal progenitor cell Glycinergic neuron Notochordal vacuole cell Myoblast Auditory epithelial supporting cell Epidermal cell Mesothelial cell Iridophore Cardiac muscle cell Endodermal cell Pericyte Lens fiber cell Neuron Thyroid follicular cell Epithelial cell of exocrine pancreas Eye photoreceptor cell Purkinje cell Multiciliated epithelial cell Kidney proximal convoluted tubule epithelial cell Primordial germ cell Gabaergic neuron Neural progenitor cell Epidermal mucus secreting cell Epithelial cell of esophagus Chondrocyte

Enteric ganglion Fast muscle tissue Leptomeninx Trigeminal ganglion Corpuscles of stannius Craniocervical muscle Presomitic mesoderm Inner nuclear layer of retina Hypochord Interrenal primordium Midbrain-hindbrain boundary Cloaca Heart primordium Liver primordium Crista ampullaris Adenohypophysis Outer nuclear layer of retina Hindbrain Lens of camera-type eye Habenula Liver Pectoral fin Periocular mesenchyme Endocrine pancreas Distal tubule Ventricular zone Telencephalon Swim bladder Hatching gland Ear vesicle Midbrain Meninx Endocardium Pharyngeal pouch Anterior segment of eyeball Intestinal epithelium Sclerotome Somite Pronephric glomerulus Intestine Pectoral appendage bud Midbrain tectum Posterior neural tube Parachordal cartilage Pharynx Gonad primordium Anterior lateral plate mesoderm Macula Lateral line Heart Tooth placode Ganglionic layer of retina Lateral plate mesoderm Lymphatic vessel endothelium Blood vessel endothelium Thyroid follicle Semicircular canal Ectoderm-derived structure Multicellular anatomical structure Proepicardium Zona limitans intrathalamica Neural rod Esophagus Cerebellum Skin epidermis Brain Pharyngeal arch Pronephric mesoderm Pancreas Neural crest Myotome Epibranchial ganglion Pigmented layer of retina Floor plate Diencephalon Blood Periderm Pancreatic epithelial bud Head connective tissue Spinal cord Genitourinary system Vestibulocochlear ganglion Forebrain Integument Cranial ganglion Blood island Pronephros Retina Trunk neural crest Notochord Midbrain tegmentum Median fin fold Cleithrum Proximal convoluted tubule Dorsolateral placode Bulbus arteriosus Olfactory system Lateral line ganglion Taste bud Lens vesicle Olfactory epithelium Hypaxial musculature Head Slow muscle tissue

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Central memory cd4-positive, alpha-beta t cell T cell Cd1c-positive myeloid dendritic cell Mature gamma-delta t cell Natural killer cell Erythrocyte Platelet Cd141-positive myeloid dendritic cell Effector memory cd4-positive, alpha-beta t cell Intermediate monocyte Cd8aa(i) thymocyte Plasmacytoid dendritic cell Basophil mast progenitor cell Cd8-positive, alpha-beta memory t cell Be cell Memory regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Axl+ dendritic cell, human Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Common myeloid progenitor Plasma cell Naive regulatory t cell Memory ccr4-positive regulatory t cell Cd14-low, cd16-positive monocyte Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Common lymphoid progenitor Mucosal invariant t cell Cd8-positive, alpha-beta regulatory t cell Transitional stage b cell Cd14-positive, cd16-negative classical monocyte Central memory cd8-positive, alpha-beta t cell Naive b cell Double negative thymocyte Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

37-year-old stage 34-year-old stage 26-year-old stage 30-year-old stage 29-year-old stage 28-year-old stage 35-year-old stage 32-year-old stage 33-year-old stage 31-year-old stage 36-year-old stage 27-year-old stage

Cytomegalovirus infection

Male

10x 3' v3

Cell