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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
896
Nucleus
659
Data Source
0
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
Single Cell Portal
16,281 cells
Explore
Mus musculus
Mus musculus
Neuron
Neuron
Normal
Normal
Mixed sex
Mixed sex
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Neuron
Tissue
Developmental stage
Disease
Normal
Sex
Mixed sex
Technology
10x 3' v3
Suspension type
Related Links
Link to Publication
CELLxGENE
16,245 cells
•
Olah et al., 2020
Single cell RNA sequencing of human microglia uncovers a subset associated with Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+5
T cell
Dorsolateral prefrontal cortex
+1
Dorsolateral prefrontal cortex
Adult stage
Adult stage
Temporal lobe epilepsy
+1
Temporal lobe epilepsy
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Erythrocyte
Neural cell
Microglial cell
B cell
Monocyte
Tissue
Dorsolateral prefrontal cortex
Temporal cortex
Developmental stage
Adult stage
Disease
Temporal lobe epilepsy
Alzheimer disease
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
vmenon.shinyapps.io
Github:vilasmenon/Microglia_Olah_et_al_2020
synapse.org:#!Synapse:syn21438358
CELLxGENE
16,234 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+9
Endothelial cell
Renal medulla
Renal medulla
72-year-old stage
72-year-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Renal medulla
Developmental stage
72-year-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
16,227 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
L6b glutamatergic cortical neuron
L6b glutamatergic cortical neuron
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
L6b glutamatergic cortical neuron
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
CELLxGENE
16,119 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of venule
+3
Endothelial cell of venule
Endometrium
+1
Endometrium
37-year-old stage
+7
37-year-old stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of venule
Endothelial cell of artery
Capillary endothelial cell
Endothelial cell of uterus
Tissue
Endometrium
Myometrium
Developmental stage
37-year-old stage
26-year-old stage
29-year-old stage
28-year-old stage
23-year-old stage
32-year-old stage
31-year-old stage
Young adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE260658
ArrayExpress BioStudies:E-MTAB-10287
GEO series:GSE111976
CELLxGENE
16,042 cells
•
Alkaslasi et al., 2021
Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord
Explore
h5ad
Mus musculus
Mus musculus
Visceromotor neuron
+2
Visceromotor neuron
Cervical spinal cord
+2
Cervical spinal cord
8-week-old stage
8-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Visceromotor neuron
Cholinergic neuron
Motor neuron
Tissue
Cervical spinal cord
Thoracic spinal cord
Lumbar spinal cord
Developmental stage
8-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
CELLxGENE
16,027 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+12
Podocyte
Kidney
Kidney
6-month-old stage
6-month-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
Bgee
16,011 cells
•
Murat et al., 2022
The molecular evolution of spermatogenesis across mammals
Explore
scRNA-Seq droplet-based processed expression values per cell population in Homo sapiens (tsv.gz)
scRNA-Seq droplet-based H5AD data per cell in Homo sapiens (h5ad)
Homo sapiens
Homo sapiens
Cell
+7
Cell
Testis
Testis
28-year-old stage
+1
28-year-old stage
Normal
Normal
Male
Male
10x genomics v2
10x genomics v2
Organism
Homo sapiens
Cell type
Cell
Early spermatid
Sertoli cell
Late spermatid
Male germ line stem cell
Obsolete somatic cell
Spermatocyte
Spermatogonium
Tissue
Testis
Developmental stage
28-year-old stage
32-year-old stage
Disease
Normal
Sex
Male
Technology
10x genomics v2
Suspension type
Related Links
ebi.ac.uk
CELLxGENE
15,891 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Osteoblast
+32
Osteoblast
Limb bone
+2
Limb bone
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Osteoblast
Neutrophil
Stromal cell
Endothelial cell of lymphatic vessel
Erythroid progenitor cell
Non-myelinating schwann cell
Endothelial cell
Mature nk t cell
Endothelial cell of sinusoid
Hematopoietic precursor cell
Cd8-positive, alpha-beta t cell
Preosteoblast
Tendon cell
Erythroid lineage cell
Capillary endothelial cell
Plasmacytoid dendritic cell
Megakaryocyte progenitor cell
Lymphocyte
Adipocyte
Macrophage
Myeloid cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Granulocyte monocyte progenitor cell
Monocyte
Vascular associated smooth muscle cell
Basophil
Conventional dendritic cell
Fibroblast
Myelinating schwann cell
Dendritic cell
Chondrocyte
Tissue
Limb bone
Vertebral column
Bone element
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
app.globus.org
UCSC Cell Browser:tabula-microcebus
ASAP
15,889 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+16
Neuron
Wing
Wing
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Nociceptive neuron
Fat cell
Tracheolar cell
Glial cell
Somatic precursor cell
Male germline cell
Gustatory receptor neuron
Hemocyte
Epithelial cell
Muscle cell
Pheromone-sensing neuron
Mechanosensory neuron
Sensory neuron
Oenocyte
Neuron
Female germline cell
Tissue
Wing
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
CELLxGENE
15,833 cells
•
Leng et al., 2021
Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
Glutamatergic neuron
Superior frontal gyrus
Superior frontal gyrus
87-year-old stage
+7
87-year-old stage
Normal
+1
Normal
Male
Male
10x 3' v2
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Tissue
Superior frontal gyrus
Developmental stage
87-year-old stage
71-year-old stage
82-year-old stage
50-year-old stage
72-year-old stage
80 year-old and over stage
77-year-old stage
60-year-old stage
Disease
Normal
Alzheimer disease
Sex
Male
Technology
10x 3' v2
Suspension type
Nucleus
Related Links
GEO series:GSE147528
kampmannlab.ucsf.edu
synapse.org:#!Synapse:syn21788402/wiki/601825
HumanCellAtlas:7dcffc32-7c82-4396-9a4f-88b5579bfe8a
CELLxGENE
15,806 cells
•
Kim et al., 2024
Transcriptomic Analysis of Air–Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial Differentiation
Explore
h5ad
Homo sapiens
Homo sapiens
Ciliated cell
+2
Ciliated cell
Lung
+1
Lung
Middle aged stage
+1
Middle aged stage
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Ciliated cell
Secretory cell
Basal cell
Tissue
Lung
Epithelial cell of lung
Developmental stage
Middle aged stage
Late adult stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
GEO series:GSE280502
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