Mus musculus

Retinal ganglion cell Rod bipolar cell Retinal cone cell Retinal rod cell Myeloid cell Retina horizontal cell Amacrine cell Mueller cell Retinal blood vessel endothelial cell Fibroblast

Normal

10x 3' v3

Mus musculus

Retinal ganglion cell Rod bipolar cell Retinal cone cell Retinal rod cell Myeloid cell Retina horizontal cell Amacrine cell Mueller cell Retinal blood vessel endothelial cell Fibroblast

Normal

10x 3' v3

Homo sapiens

T cell Erythrocyte Endothelial cell Smooth muscle cell Epithelial cell Macrophage B cell Pericyte Granulocyte monocyte progenitor cell Fibroblast Dendritic cell

Thymus

19th week post-fertilization stage 13th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage 18th week post-fertilization stage

Normal

Female

Visium spatial gene expression v1

Mus musculus

Podocyte Endothelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Macrophage Kidney distal convoluted tubule epithelial cell Kidney granular cell Kidney collecting duct principal cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Kidney proximal convoluted tubule epithelial cell

Kidney

13-week-old stage

Diabetic kidney disease

Male

Slide-seqv2

Mus musculus

Obsolete inhibitory neuron Oligodendrocyte precursor cell Astrocyte of the cerebellum Brain microvascular endothelial cell Obsolete excitatory neuron

Normal

10x 3' v2

Homo sapiens

Cd1c-positive myeloid dendritic cell Natural killer cell Cd4-negative, cd8-negative, alpha-beta intraepithelial t cell Gamma-delta t cell Activated cd4-positive, alpha-beta t cell Hematopoietic precursor cell Platelet Effector memory cd4-positive, alpha-beta t cell Erythroid lineage cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta memory t cell Cd4-positive, alpha-beta cytotoxic t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Regulatory t cell Mature b cell Activated cd8-positive, alpha-beta t cell Plasmablast Cd14-positive monocyte Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Monocyte Naive b cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell

Blood

Fifth decade stage Adult stage

Visceral leishmaniasis Hiv infectious disease

Male

10x 5' v1

Cell

Homo sapiens

T cell Osteoblast Granulocyte Stromal cell Endothelial cell of venule Natural killer cell Endothelial cell of lymphatic vessel Endothelial cell of arteriole Blood vessel smooth muscle cell Capillary endothelial cell Leukocyte Plasmacytoid dendritic cell Neural cell Endothelial cell of vascular tree Adipocyte Macrophage B cell Pericyte Fibroblast Osteoclast Dendritic cell Mononuclear phagocyte

Tendon of quadriceps femoris

69-year-old stage 75-year-old stage 44-year-old stage 29-year-old stage 25-year-old stage 67-year-old stage

Normal Injury

Male

10x 3' v3

Nucleus

Homo sapiens

Blood vessel smooth muscle cell Endothelial cell of artery Lymphocyte Macrophage Microcirculation associated smooth muscle cell Fibroblast

Right coronary artery

46-year-old stage

Normal

Male

Slide-seqv2

Mus musculus

Glutamatergic neuron Endothelial cell Gabaergic neuron

Primary motor cortex

22-week-old stage 5-week-old stage 9-week-old stage 15-week-old stage 13-week-old stage 24-week-old stage 26-week-old stage 12-week-old stage 20-week-old stage 14-week-old stage Prime adult stage 29-week-old stage 19-week-old stage 18-week-old stage 25-week-old stage 11-week-old stage 7-week-old stage 6-week-old stage 10-week-old stage 23-week-old stage 17-week-old stage 16-week-old stage 8-week-old stage

Normal

Female Male

Patch-seq 10x 3' v2

Cell

Drosophila melanogaster

Cardial cell Visceral muscle cell Midgut large flat cell Enteroendocrine cell Adult midgut enterocyte Copper cell Epithelial cell Muscle cell Enterocyte of anterior adult midgut epithelium Intestinal stem cell Enterocyte of posterior adult midgut epithelium Enteroblast Adult differentiating enterocyte

Gut

Day 5 of adulthood

Normal

Female Male

10x 3' v3

Homo sapiens

Transit amplifying cell of small intestine Intestinal crypt stem cell of colon Best4+ enterocyte Epithelial cell of small intestine Enterocyte of epithelium of small intestine Intestinal tuft cell Small intestine goblet cell Transit amplifying cell of colon Tuft cell of colon Paneth cell of epithelium of small intestine Enteroendocrine cell of small intestine Microfold cell of epithelium of small intestine Colon goblet cell Progenitor cell Intestinal crypt stem cell of small intestine Enterocyte of epithelium of large intestine Enteroendocrine cell of colon

Ascending colon Duodenum Ileum Jejunum Transverse colon Descending colon

53-year-old stage 29-year-old stage 45-year-old stage

Normal

Male

10x 3' v3

Cell

Homo sapiens

T cell Natural killer cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Amygdala excitatory neuron Committed oligodendrocyte precursor Hippocampal ca1-3 neuron Lamp5 lhx6 neuron Eccentric medium spiny neuron Pvalb chandelier gabaergic interneuron Medial ganglionic eminence derived interneuron Ependymal cell Microglial cell Pericyte Cerebral cortex neuron Near-projecting glutamatergic cortical neuron Neuron Monocyte Intratelencephalic-projecting glutamatergic cortical neuron Caudal ganglionic eminence derived interneuron Vascular associated smooth muscle cell Sst chodl gabaergic interneuron Astrocyte Fibroblast Medium spiny neuron

Supraoptic nucleus

50-year-old stage

Normal

Male

10x 3' v3

Nucleus