Mus musculus

Erythroid progenitor cell

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 13 Theiler stage 24 Theiler stage 15 Theiler stage 14 Theiler stage 12 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 25 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Astrocyte Cerebellar golgi cell Oligodendrocyte precursor cell Molecular layer interneuron Oligodendrocyte Purkinje cell Bergmann glial cell Pericyte Granule cell Unipolar brush cell Interneuron Microglial cell Endothelial cell

Normal Essential tremor

Parse evercode whole transcriptome v2

Homo sapiens

Hepatoblast Epithelial cell of lower respiratory tract Innate lymphoid cell Regular atrial cardiac myocyte Retinal ganglion cell Pancreatic ductal cell Professional antigen presenting cell Cortical cell of adrenal gland Schwann cell Endothelial cell of vascular tree Ganglion interneuron Myeloid cell Astrocyte Dermis microvascular lymphatic vessel endothelial cell Acinar cell Gabaergic neuron Glial cell Inhibitory interneuron Endocardial cell Taste receptor cell Stellate neuron Amacrine cell Smooth muscle cell Retina horizontal cell Hematopoietic cell Stromal cell Oligodendrocyte Neuron associated cell (sensu vertebrata) Cardiac muscle cell Purkinje cell Blood vessel endothelial cell Megakaryocyte Epicardial adipocyte Endocrine cell Retinal pigment epithelial cell Photoreceptor cell Tuft cell Sympathetic neuron Chromaffin cell Granule cell Hematopoietic stem cell Goblet cell Unipolar brush cell Epithelial cell of thymus Chorionic trophoblast cell Cell of skeletal muscle Mesangial cell Endothelial cell of lymphatic vessel Lens fiber cell Glutamatergic neuron Hepatic stellate cell Ciliated epithelial cell Visceromotor neuron Neuroendocrine cell Extravillous trophoblast Skeletal muscle satellite cell Erythroblast Thymocyte Mueller cell Intestinal epithelial cell Squamous epithelial cell Corneal epithelial cell Syncytiotrophoblast cell Mesothelial cell Microglial cell Bipolar neuron Trophoblast giant cell Enteric neuron Neuron Macroglial cell Ventricular cardiac muscle cell

Stomach Adrenal gland Lung Liver Placenta Muscle organ Cerebellum Kidney Spleen Telencephalon Thymus Intestine Pancreas Heart Eye

14th week post-fertilization stage 10th week post-fertilization stage 16th week post-fertilization stage 15th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 18th week post-fertilization stage 17th week post-fertilization stage

Trisomy 18 Normal

Female Male

Sci-rna-seq3

Nucleus Cell

Homo sapiens

Fibroblast Retinal ganglion cell H1 horizontal cell Retinal rod cell Offx cell Astrocyte Mast cell Off parasol ganglion cell Myelinating schwann cell Invaginating midget bipolar cell H2 horizontal cell Gabaergic amacrine cell Amacrine cell Melanocyte Oligodendrocyte precursor cell Diffuse bipolar 5 cell Diffuse bipolar 4a cell Oligodendrocyte Dendritic cell B cell Blood vessel endothelial cell Diffuse bipolar 3b cell Non-myelinating schwann cell Vascular associated smooth muscle cell Capillary endothelial cell S cone cell Retinal pigment epithelial cell Diffuse bipolar 3a cell Pigmented epithelial cell Glycinergic amacrine cell Pericyte Diffuse bipolar 6 cell Giant bipolar cell On midget ganglion cell On-blue cone bipolar cell Adipocyte On parasol ganglion cell Endothelial cell of venule Rod bipolar cell Flat midget bipolar cell Natural killer cell Macrophage Retinal cone cell Diffuse bipolar 1 cell Diffuse bipolar 2 cell Fenestrated endothelial cell Off midget ganglion cell Retinal astrocyte Mueller cell Microglial cell T cell Diffuse bipolar 4b cell

Cranial nerve ii Optic disc

54-year-old stage 62-year-old stage 27-year-old stage 74-year-old stage 72-year-old stage 53-year-old stage 21-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage Newborn stage (0-28 days) 82-year-old stage 42-year-old stage 17-year-old stage 52-year-old stage 70-year-old stage 45-year-old stage 3-year-old stage 30-year-old stage 10-year-old stage 58-year-old stage 75-year-old stage 90 year-old and over stage 15-year-old stage 18-year-old stage 50-year-old stage 64-year-old stage 68-year-old stage 77-year-old stage 11-year-old stage 33-year-old stage 69-year-old stage 32-year-old stage 76-year-old stage 63-year-old stage 60-year-old stage 25-year-old stage 56-year-old stage 37-year-old stage 46-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 71-year-old stage 34-year-old stage 16-year-old stage 47-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fibroblast Regular atrial cardiac myocyte Myeloid cell Mast cell Regular ventricular cardiac myocyte Vein endothelial cell Smooth muscle cell Cardiac muscle cell Vascular associated smooth muscle cell Capillary endothelial cell Pericyte Lymphocyte Adipocyte Endothelial cell of lymphatic vessel Natural killer cell Mesothelial cell Neuron Endothelial cell Endothelial cell of artery

Heart left ventricle Apex of heart Left cardiac atrium Interventricular septum Right cardiac atrium Heart right ventricle

54-year-old stage 35-year-old stage 39-year-old stage 62-year-old stage 27-year-old stage 73-year-old stage 21-year-old stage 61-year-old stage Sixth decade stage 52-year-old stage 48-year-old stage 59-year-old stage Eighth decade stage 55-year-old stage 75-year-old stage 51-year-old stage 68-year-old stage 66-year-old stage Fifth decade stage 63-year-old stage 60-year-old stage 46-year-old stage 20-year-old stage 65-year-old stage 71-year-old stage Seventh decade stage 44-year-old stage 47-year-old stage

Normal

Female Male

10x 3' v3 10x 5' v1 10x 3' v2

Nucleus Cell

Homo sapiens

Fibroblast Mast cell Plasma cell Fallopian tube secretory epithelial cell Dendritic cell B cell Monocyte T cell Endothelial cell

Abdominal wall Paracolic gutter Transverse colon Parietal peritoneum Caecum Liver Adnexa of uterus Ascitic fluid Right ovary Peritoneum Large intestine Omentum Urinary bladder Left ovary Abdomen Intestine Diaphragm Fallopian tube Lymph node

78-year-old stage 80 year-old and over stage 61-year-old stage 57-year-old stage 70-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage 55-year-old stage 58-year-old stage 75-year-old stage 50-year-old stage 64-year-old stage 68-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 76-year-old stage 63-year-old stage 60-year-old stage 56-year-old stage 46-year-old stage 71-year-old stage 47-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Mus musculus

Fibroblast Colon epithelial cell Mast cell Granulocyte Cell Malignant cell Enteroendocrine cell of colon Dendritic cell B cell Regulatory t cell Blood vessel endothelial cell Colon glandular cell Myofibroblast cell Endothelial cell of lymphatic vessel Natural killer cell Macrophage Colonocyte Monocyte T cell Intestinal crypt stem cell of colon

Normal Colorectal carcinoma

Spatial transcriptomics Slide-seqv2 10x 3' v3 10x 3' v2

Homo sapiens

Fibroblast Innate lymphoid cell Myeloid cell Granulocyte Smooth muscle cell Cell B cell Megakaryocyte Erythroid lineage cell Progenitor cell Cell of skeletal muscle T cell

Normal

10x 5' v2 10x 3' v2

Homo sapiens

Fibroblast Innate lymphoid cell Enteroendocrine cell Pre-conventional dendritic cell Kupffer cell Double negative thymocyte B-1 b cell Common myeloid progenitor Keratinocyte Osteoclast Hematopoietic multipotent progenitor cell Eurydendroid cell Mast cell Langerhans cell Large pre-b-ii cell Group 2 innate lymphoid cell Glial cell Granulocyte Early lymphoid progenitor Fraction a pre-pro b cell Smooth muscle cell Melanocyte Neutrophil Pro-b cell Common dendritic progenitor Epithelial cell Stromal cell Interstitial cell of cajal Small pre-b-ii cell Plasma cell Immature b cell Dendritic cell Regulatory t cell Chondrocyte Megakaryocyte Vascular associated smooth muscle cell Epithelial cell of nephron B-2 b cell Naive thymus-derived cd4-positive, alpha-beta t cell Late pro-b cell Myofibroblast cell Naive thymus-derived cd8-positive, alpha-beta t cell Hepatocyte Hematopoietic stem cell Plasmacytoid dendritic cell Cell of skeletal muscle Promonocyte Megakaryocyte-erythroid progenitor cell Granulocyte monocyte progenitor cell Natural killer cell Macrophage Mature b cell Skeletal muscle satellite cell Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Myelocyte Erythrocyte Group 3 innate lymphoid cell Osteoblast Monocyte Mesothelial cell Promyelocyte T cell Neuron Endothelial cell Double-positive, alpha-beta thymocyte

Skin of body Mesenteric lymph node Liver Gut wall Bone marrow Kidney Spleen Yolk sac Thymus

Carnegie stage 19 Carnegie stage 20 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 23 16th week post-fertilization stage Carnegie stage 22 Carnegie stage 13 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Multiciliated epithelial cell Myeloid cell Mast cell Bronchus fibroblast of lung Vein endothelial cell Alveolar macrophage Smooth muscle cell Neutrophil Stromal cell Malignant cell Plasma cell Dendritic cell B cell Regulatory t cell Fibroblast of lung Cd1c-positive myeloid dendritic cell Capillary endothelial cell Pericyte Epithelial cell of lung Club cell Non-classical monocyte Pulmonary alveolar type 2 cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta t cell Pulmonary alveolar type 1 cell Endothelial cell of lymphatic vessel Natural killer cell Macrophage Conventional dendritic cell Classical monocyte Mesothelial cell Cd4-positive, alpha-beta t cell Pulmonary artery endothelial cell

Adrenal tissue Lung Pleural effusion Liver Brain Lymph node

54-year-old stage 35-year-old stage 62-year-old stage 78-year-old stage 73-year-old stage 74-year-old stage 26-year-old stage 72-year-old stage 53-year-old stage 21-year-old stage 83-year-old stage 61-year-old stage 57-year-old stage 82-year-old stage 49-year-old stage 42-year-old stage 36-year-old stage 52-year-old stage 86-year-old stage 48-year-old stage 70-year-old stage 40-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage 55-year-old stage 23-year-old stage 58-year-old stage 75-year-old stage 22-year-old stage 50-year-old stage 51-year-old stage 79-year-old stage 64-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 32-year-old stage 28-year-old stage 76-year-old stage 31-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage 25-year-old stage 56-year-old stage 37-year-old stage 46-year-old stage 67-year-old stage 43-year-old stage 20-year-old stage 65-year-old stage 71-year-old stage 47-year-old stage

Squamous cell lung carcinoma Non-small cell lung carcinoma Normal Chronic obstructive pulmonary disease Lung adenocarcinoma

Female Male

Bd rhapsody whole transcriptome analysis 10x 3' v3 Drop-seq 10x 3' v1 Indrop Smart-seq2 10x 5' v1 10x 3' v2 Gexscope technology

Cell

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Vascular associated smooth muscle cell Bergmann glial cell Pericyte Ependymal cell Central nervous system macrophage Choroid plexus epithelial cell Endothelial cell

Intralaminar nuclear group Primary motor cortex Perirhinal cortex Cerebellar nuclear complex Inferior temporal gyrus Dentate gyrus of hippocampal formation Cerebrocerebellum Primary visual cortex Brodmann (1909) area 35 Ventral anterior nucleus of thalamus Brodmann (1909) area 46 Subthalamic nucleus Globus pallidus Nucleus accumbens Primary somatosensory cortex Midbrain tectum Lateral nuclear group of thalamus Inferior frontal gyrus Epithalamus Cuneus cortex Retrosplenial region Medial dorsal nucleus of thalamus Medial zone of hypothalamus Putamen Lateral geniculate body Brodmann (1909) area 25 Nucleus of medulla oblongata Red nucleus Corticomedial nuclear complex Nucleus of dorsal thalamus Brodmann (1909) area 14 Pontine reticular formation Brodmann (1909) area 19 Midbrain nucleus Piriform cortex Pontine tegmentum Accessory basal amygdaloid nucleus Anterior olfactory nucleus Hypothalamus Granular insular cortex Centromedian nucleus of thalamus Brodmann (1909) area 32 Superior temporal gyrus Substantia nigra Primary auditory cortex Brodmann (1909) area 24 Cerebellar vermis Uncal ca1 Anterior cortical amygdaloid nucleus Lateral entorhinal cortex Septal nuclear complex Basolateral amygdaloid nuclear complex Spinal cord Preoptic area Middle temporal gyrus Parabrachial nucleus Brodmann (1909) area 38 Agranular insular cortex Pulvinar nucleus Body of caudate nucleus Temporal fusiform gyrus Extrastriate cortex Brodmann (1909) area 23 Medial entorhinal cortex Lateral amygdaloid nucleus Supraoptic nucleus Posterior parahippocampal gyrus Pontine nuclear group Median tuberal portion Superior parietal cortex Dorsal tegmental nucleus Substantia innominata Bed nucleus of stria terminalis Brodmann (1909) area 13 Medial geniculate body Inferior olivary complex Gray matter of midbrain Mammillary body Anterior nuclear group Central amygdaloid nucleus Subicular complex Brodmann (1909) area 43 Hippocampal field Rostral ca3 Brodmann (1909) area 40 Claustrum of brain Pretectal region Lateral posterior nucleus of thalamus

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Callithrix jacchus

Fibroblast Astrocyte Brain microvascular endothelial cell Mural cell Oligodendrocyte precursor cell Oligodendrocyte Ependymal cell Microglial cell Choroid plexus epithelial cell Neuron

Normal

10x 3' transcription profiling