Drosophila melanogaster

Eo sensory organ accessory cell Follicle cell Escort cell Hemocyte Subperineurial glial cell Germline cell Cell body glial cell Indirect flight muscle cell Muscle cell Enteroendocrine cell

Day 5 of adulthood

Normal

Female Male Mixed sex

10x 3' v3

Homo sapiens

Enteroendocrine cell Transit amplifying cell Enterocyte Tuft cell of small intestine Paneth cell Intestine goblet cell Colonocyte Best4+ enterocyte Intestinal crypt stem cell

Epithelium of rectum Ascending colon Sigmoid colon Transverse colon Caecum Colonic epithelium Colonic mucosa Vermiform appendix Descending colon Rectosigmoid junction Rectum Lamina propria of mucosa of colon Colon

54-year-old stage 35-year-old stage Adult stage 74-year-old stage Third decade stage 85-year-old stage 81-year-old stage Juvenile stage (5-14 yo) Sixth decade stage 52-year-old stage 86-year-old stage Eighth decade stage 30-year-old stage 55-year-old stage 23-year-old stage 2-year-old stage 50-year-old stage 51-year-old stage 29-year-old stage 66-year-old stage 77-year-old stage 33-year-old stage 5-year-old stage Fifth decade stage 31-year-old stage 60-year-old stage 84-year-old stage Pediatric stage 67-year-old stage Seventh decade stage 44-year-old stage

Inflammatory bowel disease Colorectal cancer Normal Ulcerative colitis

Female Male

10x 5' transcription profiling 10x 3' v3 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Mus musculus

Fibroblast Vein endothelial cell Myelinating schwann cell Smooth muscle cell Neutrophil B cell Non-myelinating schwann cell Type iia muscle cell Capillary endothelial cell Type ii muscle cell Type i muscle cell Pericyte Skeletal muscle satellite stem cell Muscle cell Adipocyte Endothelial cell of lymphatic vessel Tendon cell Extrafusal muscle fiber Macrophage Erythrocyte Monocyte Type iib muscle cell Endothelial cell of artery

Hindlimb muscle

3-month-old stage 19-month-old stage

Normal

Male

10x 3' v2

Cell Nucleus

Homo sapiens

Secretory cell Cytotoxic t cell Alveolar type 1 fibroblast cell Innate lymphoid cell Ionocyte Mast cell Dendritic cell, human Respiratory tract multiciliated cell Endocardial cell Stromal cell Respiratory tract goblet cell Plasma cell B cell Mature t cell Fibroblast of lung Pericyte Epithelial cell of lung Club cell Non-classical monocyte Cd4-positive helper t cell Alveolar adventitial fibroblast Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Bronchial goblet cell Monocyte Nasal mucosa goblet cell Basal cell Respiratory tract suprabasal cell Pulmonary neuroendocrine cell Mucus secreting cell of bronchus submucosal gland

Carina of trachea Respiratory tube

35-year-old stage Adult stage 27-year-old stage 26-year-old stage Sixth decade stage 30-year-old stage 29-year-old stage 33-year-old stage Fifth decade stage 31-year-old stage 24-year-old stage Seventh decade stage

Cystic fibrosis Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Neuron

Prefrontal cortex

62-year-old stage 80 year-old and over stage 73-year-old stage 72-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage 79-year-old stage 89-year-old stage 68-year-old stage 66-year-old stage 87-year-old stage 67-year-old stage 71-year-old stage

Normal Alzheimer disease

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Schwann cell Pituitary gland cell Neural progenitor cell Epithelial cell of thyroid gland Peridermal cell Melanocyte Mesenchymal cell Immature innate lymphoid cell Embryonic blood vessel endothelial progenitor cell Progenitor cell Muscle precursor cell Neuroplacodal cell Erythroid progenitor cell, mammalian Neural stem cell Osteoblast Ectodermal cell Neural crest cell

Pharyngeal arch system

Carnegie stage 20 Carnegie stage 12 Carnegie stage 14 Carnegie stage 13 Carnegie stage 17 Carnegie stage 16

Normal

Female Male

10x multiome

Nucleus

Homo sapiens

Effector memory cd8-positive, alpha-beta t cell Central memory cd4-positive, alpha-beta t cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell T cell

Blood

Sixth decade stage Fourth decade stage Fifth decade stage Seventh decade stage

Covid-19 Normal

Female Male

10x 5' v2 10x 5' v1

Cell

Homo sapiens

Mucosal invariant t cell Cd16-positive, cd56-dim natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Intermediate monocyte Hematopoietic precursor cell Cd4-positive, alpha-beta memory t cell Memory b cell Plasma cell Gamma-delta t cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Non-classical monocyte Plasmacytoid dendritic cell Activated cd8-positive, alpha-beta t cell Type i nk t cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd16-negative, cd56-bright natural killer cell, human Macrophage Conventional dendritic cell Cd8-positive, alpha-beta memory t cell Classical monocyte Naive b cell

Blood

42-year-old stage 36-year-old stage 52-year-old stage 55-year-old stage 22-year-old stage 50-year-old stage 66-year-old stage 33-year-old stage 28-year-old stage 31-year-old stage 37-year-old stage 34-year-old stage

Common variable immunodeficiency Normal

Female Male

10x 5' v1

Cell

Homo sapiens

Fibroblast Fibroblastic reticular cell Smooth muscle cell Mesenchymal cell Vascular associated smooth muscle cell Myofibroblast cell Angiogenic pericyte Mesodermal cell Muscle cell Gastrointestinal tract (lamina propria) macrophage Mesothelial cell Immature pericyte

Pyloric antrum Mesenteric lymph node Ileum Small intestine Body of stomach Intestine Esophagus Duodenum Colon

21st week post-fertilization stage Newborn stage (0-28 days) 16th week post-fertilization stage 19th week post-fertilization stage 2-month-old stage 15th week post-fertilization stage 12th week post-fertilization stage 18th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 5' v2 10x 3' v2

Cell

Homo sapiens

Fibroblast Mast cell Mesenchymal stem cell Intermediate monocyte Smooth muscle cell Myeloid dendritic cell Hematopoietic precursor cell Neutrophil Plasma cell B cell Pericyte Myofibroblast cell Activated cd4-positive, alpha-beta t cell Non-classical monocyte Muscle cell Leukocyte Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Platelet Erythrocyte Mesenchymal stem cell of adipose tissue Monocyte Mature nk t cell Classical monocyte Cd4-positive, alpha-beta t cell T cell Endothelial cell

Brown adipose tissue Subcutaneous adipose tissue Adipose tissue

61-year-old stage 45-year-old stage 59-year-old stage 33-year-old stage 60-year-old stage 56-year-old stage

Normal

Female Male

10x 3' v3 Smart-seq2

Cell

Homo sapiens

Innate lymphoid cell Plasmablast Follicular b cell Igg plasma cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Dendritic cell B cell Naive thymus-derived cd4-positive, alpha-beta t cell Hematopoietic stem cell Plasmacytoid dendritic cell Lymphocyte Activated cd8-positive, alpha-beta t cell Igm plasma cell Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Platelet Cd8-alpha alpha positive, gamma-delta intraepithelial t cell Conventional dendritic cell Monocyte Cd4-positive, alpha-beta t cell T cell T follicular helper cell

Spleen

Third decade stage Sixth decade stage Fifth decade stage

Normal

Female Male

10x 3' v2

Cell

Mus musculus

Gabaergic neuron Glutamatergic neuron

Primary motor cortex

14-week-old stage 12-week-old stage 11-week-old stage 6-week-old stage 8-week-old stage 5-week-old stage 7-week-old stage 18-week-old stage 26-week-old stage 9-week-old stage 13-week-old stage 10-week-old stage 23-week-old stage 8-month-old stage 15-week-old stage Prime adult stage 16-week-old stage 29-week-old stage 20-week-old stage 17-week-old stage 21-week-old stage 25-week-old stage 19-week-old stage

Normal

Female Male

Patch-seq 10x 3' v2

Cell