Mus musculus

Endo-epithelial cell Respiratory tract goblet cell Club cell Pulmonary alveolar type 2 cell Pulmonary alveolar type 1 cell Lung endothelial cell

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 24 Theiler stage 15 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 25 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Fibroblast Gut endothelial cell Enteric smooth muscle cell Pericyte Myofibroblast cell Neural cell Leukocyte Intestinal epithelial cell Mesothelial cell

Hindgut Ileum Colon

21st week post-fertilization stage 14th week post-fertilization stage 10th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 22 19th week post-fertilization stage 23rd week post-fertilization stage 20th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 18th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Effector memory cd4-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell Gamma-delta t cell Regulatory t cell Activated cd4-positive, alpha-beta t cell Cd4-positive helper t cell Lymphocyte Activated cd8-positive, alpha-beta t cell Natural killer cell Mature nk t cell Cd8-positive, alpha-beta memory t cell Cd4-positive, alpha-beta t cell T cell

Breast

Adult stage Prime adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Lung pericyte Pancreatic acinar cell Mast cell Dendritic cell, human Smooth muscle cell Neutrophil Plasma cell B cell Regulatory t cell Fibroblast of lung Pulmonary capillary endothelial cell Club cell Non-classical monocyte Plasmacytoid dendritic cell, human Pulmonary alveolar type 2 cell Cd8-positive, alpha-beta t cell Pulmonary alveolar type 1 cell Lung macrophage Natural killer cell Lung endothelial cell Mature nk t cell Basal cell Classical monocyte Mesothelial cell Cd4-positive, alpha-beta t cell Lung multiciliated epithelial cell Myeloid dendritic cell, human

Upper lobe of left lung

83-year-old stage

Covid-19

Male

10x 3' v3

Cell

Callithrix jacchus

L6b glutamatergic cortical neuron Lamp5 gabaergic interneuron Astrocyte of the cerebral cortex Corticothalamic-projecting glutamatergic cortical neuron Pvalb chandelier gabaergic interneuron Vip gabaergic interneuron Oligodendrocyte precursor cell Caudal ganglionic eminence derived interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron Oligodendrocyte Cerebral cortex endothelial cell Pvalb gabaergic interneuron Sncg gabaergic interneuron Sst gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Vascular leptomeningeal cell Microglial cell

Middle temporal gyrus

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Sst gabaergic interneuron

Dorsolateral prefrontal cortex

78-year-old stage 80 year-old and over stage 72-year-old stage 83-year-old stage 85-year-old stage 81-year-old stage 82-year-old stage 42-year-old stage 86-year-old stage 70-year-old stage 75-year-old stage 50-year-old stage 89-year-old stage 68-year-old stage 29-year-old stage 77-year-old stage 69-year-old stage 88-year-old stage 87-year-old stage 80-year-old stage 84-year-old stage

Dementia Normal

Female Male

10x multiome 10x 3' v3

Nucleus

Callithrix jacchus

Oligodendrocyte

Primary motor cortex Primary visual cortex Dorsolateral prefrontal cortex Primary somatosensory cortex Temporal cortex Temporal lobe Secondary visual cortex Primary auditory cortex Brodmann (1909) area 23 Prefrontal cortex Parietal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fibroblast Glial cell Pericyte Myofibroblast cell Lymphocyte Endothelial cell

Ileum lamina propria Ileal epithelium Ileum Small intestine Lamina propria of small intestine

Third decade stage Sixth decade stage Fourth decade stage Eighth decade stage Fifth decade stage Seventh decade stage

Crohn disease Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Perivascular cell Astrocyte Gabaergic neuron Oligodendrocyte precursor cell Oligodendrocyte Pericyte Glutamatergic neuron Central nervous system macrophage Microglial cell Endothelial cell

Primary motor cortex

73-year-old stage 83-year-old stage 75-year-old stage 68-year-old stage 80-year-old stage 67-year-old stage

Amyotrophic lateral sclerosis Normal

Female Male

10x multiome 10x 3' v3

Nucleus

Homo sapiens

Fibroblast Mast cell Cholangiocyte Neutrophil Mononuclear phagocyte Malignant cell Plasma cell B cell Hepatocyte Plasmacytoid dendritic cell Natural killer cell Conventional dendritic cell T cell Endothelial cell

Liver

39-year-old stage 53-year-old stage 70-year-old stage 56-year-old stage 46-year-old stage

Metastatic malignant neoplasm Normal Colorectal carcinoma

Female Male

Bd rhapsody whole transcriptome analysis

Cell

Homo sapiens

Placental villous trophoblast Extravillous trophoblast Syncytiotrophoblast cell Trophoblast giant cell

Placenta Decidua Decidua basalis

Carnegie stage 18 10th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 Carnegie stage 14 11th week post-fertilization stage 13th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

Female

10x multiome 10x 3' v3 10x 3' v2

Cell Nucleus

Homo sapiens

Neuron

Primary motor cortex Dentate gyrus of hippocampal formation Brodmann (1909) area 46 Subthalamic nucleus Retrosplenial region Lateral geniculate body Brodmann (1909) area 25 Corticomedial nuclear complex Brodmann (1909) area 14 Piriform cortex Accessory basal amygdaloid nucleus Anterior olfactory nucleus Hypothalamus Substantia nigra Uncal ca1 Septal nuclear complex Basolateral amygdaloid nuclear complex Middle temporal gyrus Pulvinar nucleus Medial entorhinal cortex Lateral amygdaloid nucleus Supraoptic nucleus Posterior parahippocampal gyrus Bed nucleus of stria terminalis Medial geniculate body Mammillary body Subicular complex Hippocampal field Rostral ca3

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus