Homo sapiens

Gabaergic neuron

Brodmann (1909) area 17 Brodmann (1909) area 7 Brodmann (1909) area 9

62-year-old stage 73-year-old stage 83-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage 82-year-old stage 111-year-old stage 52-year-old stage 86-year-old stage 70-year-old stage 58-year-old stage 75-year-old stage 79-year-old stage 89-year-old stage 68-year-old stage 66-year-old stage 93-year-old stage 76-year-old stage 88-year-old stage 87-year-old stage 97-year-old stage 80-year-old stage 91-year-old stage 92-year-old stage 67-year-old stage 71-year-old stage

Normal Alzheimer disease

Female Male

10x 3' v3 Drop-seq 10x 3' v2

Nucleus

Danio rerio

Smooth muscle cell Chondroblast Mesenchymal cell Chondrocyte Pericyte Migratory cranial neural crest cell Mesodermal cell Tendon cell Hypertrophic chondrocyte Neural crest cell Connective tissue cell

Meninx Head connective tissue Trunk neural crest Neural crest Bulbus arteriosus Anterior segment of eyeball Periocular mesenchyme Leptomeninx Pharyngeal arch Multicellular anatomical structure Head

Hatching:pec-fin Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25 Segmentation:14-19 somites Pharyngula:high-pec Segmentation:26+ somites Hatching:long-pec Segmentation:20-25 somites Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Neuron

Intralaminar nuclear group Primary motor cortex Perirhinal cortex Inferior temporal gyrus Dentate gyrus of hippocampal formation Primary visual cortex Ventral anterior nucleus of thalamus Brodmann (1909) area 46 Subthalamic nucleus Globus pallidus Nucleus accumbens Primary somatosensory cortex Midbrain tectum Inferior frontal gyrus Epithalamus Cuneus cortex Retrosplenial region Medial zone of hypothalamus Putamen Lateral geniculate body Brodmann (1909) area 25 Red nucleus Corticomedial nuclear complex Brodmann (1909) area 14 Brodmann (1909) area 19 Piriform cortex Accessory basal amygdaloid nucleus Anterior olfactory nucleus Granular insular cortex Brodmann (1909) area 32 Superior temporal gyrus Substantia nigra Primary auditory cortex Brodmann (1909) area 24 Uncal ca1 Anterior cortical amygdaloid nucleus Lateral entorhinal cortex Septal nuclear complex Basolateral amygdaloid nuclear complex Preoptic area Middle temporal gyrus Brodmann (1909) area 38 Agranular insular cortex Temporal fusiform gyrus Extrastriate cortex Brodmann (1909) area 23 Medial entorhinal cortex Lateral amygdaloid nucleus Supraoptic nucleus Posterior parahippocampal gyrus Superior parietal cortex Substantia innominata Bed nucleus of stria terminalis Brodmann (1909) area 13 Gray matter of midbrain Mammillary body Central amygdaloid nucleus Subicular complex Brodmann (1909) area 43 Hippocampal field Brodmann (1909) area 40 Claustrum of brain Pretectal region Lateral posterior nucleus of thalamus

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Retinal ganglion cell

Normal

10x 3' v3 10x 3' v2

Mus musculus

Retinal ganglion cell

Retina

12-week-old stage 11-week-old stage 8-week-old stage 5-week-old stage 7-week-old stage 9-week-old stage Postnatal stage 4-month-old stage 2-week-old stage 25-week-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Pulmonary ionocyte Brush cell of bronchus Basal cell of epithelium of bronchus Club cell Bronchial goblet cell Pulmonary neuroendocrine cell Multiciliated epithelial cell of the bronchus

Bronchial epithelial cell

Covid-19 Normal

10x 3' v3

Cell

Homo sapiens

Fibroblast Alveolar type 1 fibroblast cell Innate lymphoid cell Lung pericyte Group 3 innate lymphoid cell, human Common myeloid progenitor Hematopoietic multipotent progenitor cell Cd16-positive, cd56-dim natural killer cell, human Mast cell Large pre-b-ii cell Cd14-low, cd16-positive monocyte Group 2 innate lymphoid cell Granulocyte Early lymphoid progenitor Cd14-positive monocyte Fraction a pre-pro b cell Smooth muscle cell Lung secretory cell Neutrophil Pro-b cell Epithelial cell of distal tubule Early pro-b cell Immature b cell Dendritic cell Regulatory t cell Megakaryocyte Late pro-b cell Precursor b cell Plasmacytoid dendritic cell Erythroid lineage cell Alveolar adventitial fibroblast Cd8-positive, alpha-beta t cell Megakaryocyte-erythroid progenitor cell Cd16-negative, cd56-bright natural killer cell, human Granulocyte monocyte progenitor cell Natural killer cell Macrophage Mature b cell Group 1 innate lymphoid cell Pro-t cell Myelocyte Conventional dendritic cell Ciliated cell Monocyte Cd4-positive, alpha-beta t cell Megakaryocyte progenitor cell Cd22-positive, cd38-low small pre-b cell Endothelial cell

Lung

Carnegie stage 19 21st week post-fertilization stage 10th week post-fertilization stage 20th week post-fertilization stage 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 22nd week post-fertilization stage 18th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Secretory cell Fibroblast Mast cell Smooth muscle cell B cell Blood vessel endothelial cell Pericyte Myofibroblast cell Endothelial cell of lymphatic vessel Macrophage Ciliated epithelial cell Mature nk t cell

Fimbria of fallopian tube Isthmus of fallopian tube Ampulla of fallopian tube Fallopian tube

52-year-old stage 30-year-old stage 32-year-old stage 31-year-old stage 46-year-old stage 34-year-old stage

Hydrosalpinx Normal

Female

10x 3' v3

Cell

Homo sapiens

Group 3 innate lymphoid cell, human Mast cell Dendritic cell, human Granulocyte Stromal cell Mononuclear phagocyte Plasma cell B cell Cd34-negative, cd117-positive innate lymphoid cell, human Plasmacytoid dendritic cell Natural killer cell T cell Endothelial cell

Cystic lymph node

54-year-old stage 40-year-old stage 75-year-old stage 51-year-old stage 64-year-old stage 20-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Fibroblast Fibroblastic reticular cell Follicular dendritic cell Vascular associated smooth muscle cell Pericyte Myofibroblast cell Fibroblast of gingiva Gastrointestinal tract (lamina propria) macrophage Mesothelial cell

Epithelium of rectum Ileum lamina propria Ileal epithelium Epithelium of esophagus Stomach Ascending colon Sigmoid colon Transverse colon Pyloric antrum Caecum Colonic epithelium Colonic mucosa Mesenteric lymph node Ileum Vermiform appendix Descending colon Rectosigmoid junction Small intestine Periodontium Body of stomach Buccal mucosa Esophagus Jejunum Epithelium of stomach Rectum Labial gland Duodenum Pylorus Gingiva Parotid gland Colon

54-year-old stage 35-year-old stage Adult stage 39-year-old stage 62-year-old stage 26-year-old stage 72-year-old stage 9-year-old stage Third decade stage 21-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage Juvenile stage (5-14 yo) 13-year-old stage Sixth decade stage 4-year-old stage Fourth decade stage 52-year-old stage 86-year-old stage 48-year-old stage 70-year-old stage 6-year-old stage 12-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 10-year-old stage 55-year-old stage 23-year-old stage 58-year-old stage 14-year-old stage 2-year-old stage 75-year-old stage 22-year-old stage 50-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 77-year-old stage 11-year-old stage 33-year-old stage 69-year-old stage 32-year-old stage 28-year-old stage 76-year-old stage Young adult stage Fifth decade stage 31-year-old stage 87-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage Prime adult stage 84-year-old stage 56-year-old stage 37-year-old stage Pediatric stage 46-year-old stage 24-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage Seventh decade stage 44-year-old stage 34-year-old stage

Crohn disease Inflammatory bowel disease Colorectal cancer Gastric cancer Normal Ulcerative colitis

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v1 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Double negative thymocyte Alpha-beta t cell Gamma-delta t cell Regulatory t cell T-helper 17 cell Cd8-positive, alpha-beta t cell Natural killer cell Thymocyte Cd4-positive, alpha-beta t cell T cell Double-positive, alpha-beta thymocyte

Thymus

10th week post-fertilization stage Juvenile stage (5-14 yo) 16th week post-fertilization stage 3-month-old stage 2-year-old stage 10-month-old stage 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 15-month-old stage Organogenesis stage 9th week post-fertilization stage 6-month-old stage 17th week post-fertilization stage

Normal

Female Male

10x 3' v3 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Cd4-positive, cd25-positive, alpha-beta regulatory t cell Gamma-delta t cell T-helper 17 cell Activated cd4-positive, alpha-beta t cell Cd8-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Natural killer cell Group 3 innate lymphoid cell Mature nk t cell Cd8-positive, alpha-beta memory t cell Cd4-positive, alpha-beta t cell T cell T follicular helper cell

Colorectum

90-year-old stage 35-year-old stage 62-year-old stage 78-year-old stage 73-year-old stage 72-year-old stage 53-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage 82-year-old stage 49-year-old stage 42-year-old stage 36-year-old stage 52-year-old stage 48-year-old stage 70-year-old stage 45-year-old stage 59-year-old stage 55-year-old stage 58-year-old stage 50-year-old stage 51-year-old stage 89-year-old stage 64-year-old stage 77-year-old stage 69-year-old stage 76-year-old stage 60-year-old stage 84-year-old stage 56-year-old stage 91-year-old stage 67-year-old stage 71-year-old stage 47-year-old stage

Colon adenocarcinoma Normal

Female Male

10x 3' v3 10x 3' v2

Cell