Homo sapiens

Neutrophil Merkel cell Blood vessel endothelial cell Natural killer cell Endothelial cell of lymphatic vessel Mast cell Cd8-positive, alpha-beta t cell Adult skeletal muscle myoblast Cd4-positive helper t cell Schwann cell Melanocyte Myoepithelial cell Macrophage Mural cell Keratinocyte Acinar cell of salivary gland Plasma cell Salivary gland glandular cell Langerhans cell B cell Fibroblast Dendritic cell

Gingiva Mucosa of lip Buccal mucosa Hard palate Soft palate

21-year-old stage 34-year-old stage 65-year-old stage Sixth decade stage 61-year-old stage 39-year-old stage 56-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 24-year-old stage 35-year-old stage Seventh decade stage 32-year-old stage 33-year-old stage 31-year-old stage 22-year-old stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Blood vessel endothelial cell Endothelial cell of periportal hepatic sinusoid Endothelial cell of lymphatic vessel Endothelial cell of sinusoid Endothelial cell of hepatic portal vein Endothelial cell of artery Lymphocyte Endothelial cell of pericentral hepatic sinusoid

Left lobe of liver Right lobe of liver Caudate lobe of liver Liver

66-year-old stage 37-year-old stage 75-year-old stage 21-year-old stage 65-year-old stage 26-year-old stage Sixth decade stage 71-year-old stage 53-year-old stage 61-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 39-year-old stage 44-year-old stage 56-year-old stage Fifth decade stage 55-year-old stage 50-year-old stage 80-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage Third decade stage 49-year-old stage Seventh decade stage 58-year-old stage 59-year-old stage Adult stage 67-year-old stage Late adult stage 32-year-old stage 77-year-old stage 33-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage Fourth decade stage Eighth decade stage Prime adult stage Ninth decade stage Young adult stage

Normal

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Nucleus Cell

Homo sapiens

Stromal cell of endometrium Perivascular cell Uterine smooth muscle cell Fibro/adipogenic progenitor cell Decidual cell Fibroblast

Endometrium Myometrium

37-year-old stage 26-year-old stage 29-year-old stage 28-year-old stage 23-year-old stage 32-year-old stage 31-year-old stage Young adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Thalamic excitatory neuron

Subthalamic nucleus Medial geniculate body Anterior nuclear group Centromedian nucleus of thalamus Intralaminar nuclear group Medial dorsal nucleus of thalamus Globus pallidus Midbrain nucleus Piriform cortex Lateral nuclear group of thalamus Central amygdaloid nucleus Ventral anterior nucleus of thalamus Septal nuclear complex Epithalamus Midbrain tectum Substantia nigra Gray matter of midbrain Accessory basal amygdaloid nucleus Pulvinar nucleus Hypothalamus Primary motor cortex Medial zone of hypothalamus Dentate gyrus of hippocampal formation Lateral posterior nucleus of thalamus Bed nucleus of stria terminalis Lateral geniculate body Pretectal region Nucleus of dorsal thalamus

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Neutrophil Natural killer cell Erythrocyte Mature nk t cell Hematopoietic precursor cell Cd8-positive, alpha-beta t cell Platelet Classical monocyte Intermediate monocyte Plasmacytoid dendritic cell Myeloid dendritic cell Macrophage Regulatory t cell Hematopoietic stem cell Common myeloid progenitor Plasma cell Cd4-positive, alpha-beta t cell B cell Naive thymus-derived cd4-positive, alpha-beta t cell Monocyte Basophil Non-classical monocyte

Blood

69-year-old stage 61-year-old stage 56-year-old stage 59-year-old stage 33-year-old stage 45-year-old stage 60-year-old stage

Normal

Female Male

10x 5' v2 Smart-seq2 10x 3' v3

Cell

Mus musculus

Neutrophil Granulocyte Hepatocyte Stromal cell Natural killer cell Erythrocyte Gamma-delta t cell Alpha-beta t cell Plasmacytoid dendritic cell Myeloid cell Plasma cell B cell Conventional dendritic cell

Fibrotic liver disease Normal

10x 3' transcription profiling

Mus musculus

Neutrophil Endothelial cell Trigeminal neuron Smooth muscle cell Connective tissue cell Macrophage Glial cell B cell Pericyte Fibroblast

Trigeminal ganglion

8-week-old stage

Peripheral neuropathy Normal

Female Male

Bd rhapsody whole transcriptome analysis Indrop Smart-seq3 10x 3' v3 Drop-seq

Nucleus Cell

Homo sapiens

T cell Adipocyte of omentum tissue Endothelial cell of lymphatic vessel Endothelial cell Myeloid lineage restricted progenitor cell Mast cell Macrophage Mural cell Mesenchymal stem cell of adipose tissue Mesothelial cell B cell Monocyte

Visceral fat

34-year-old stage 53-year-old stage 48-year-old stage 29-year-old stage 28-year-old stage 24-year-old stage Adult stage 33-year-old stage 41-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Macroglial cell Astrocyte

Corticomedial nuclear complex Primary visual cortex Globus pallidus Piriform cortex Middle temporal gyrus Septal nuclear complex Lateral entorhinal cortex Agranular insular cortex Nucleus accumbens Substantia innominata Primary motor cortex Brodmann (1909) area 24 Brodmann (1909) area 46 Body of caudate nucleus Bed nucleus of stria terminalis Putamen Amygdala

42-year-old stage 29-year-old stage 58-year-old stage

Normal

Male

Snm3c-seq

Nucleus

Homo sapiens

Cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Macroglial cell Astrocyte

Corticomedial nuclear complex Primary visual cortex Globus pallidus Piriform cortex Middle temporal gyrus Septal nuclear complex Lateral entorhinal cortex Agranular insular cortex Nucleus accumbens Substantia innominata Primary motor cortex Brodmann (1909) area 24 Brodmann (1909) area 46 Body of caudate nucleus Bed nucleus of stria terminalis Putamen Amygdala

42-year-old stage 29-year-old stage 58-year-old stage

Normal

Male

Snm3c-seq

Nucleus

Homo sapiens

Endothelial cell of artery Capillary endothelial cell Vein endothelial cell

Breast

Adult stage Prime adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Effector cd8-positive, alpha-beta t cell Granulocyte Cd1c-positive myeloid dendritic cell Luminal cell of prostate epithelium Natural killer cell Prostate gland microvascular endothelial cell Secretory cell Mature nk t cell Cd141-positive myeloid dendritic cell Classical monocyte Plasmacytoid dendritic cell Effector cd4-positive, alpha-beta t cell Fibroblast of connective tissue of glandular part of prostate Smooth muscle cell of prostate Plasma cell Cd8-positive, alpha-beta thymocyte Cd4-positive, alpha-beta thymocyte Epithelial cell of urethra B cell Pericyte Fibroblast of connective tissue of nonglandular part of prostate Vascular associated smooth muscle cell Basal cell of prostate epithelium Dendritic cell Non-classical monocyte

Transition zone of prostate Peripheral zone of prostate

71-year-old stage 29-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 67-year-old stage 31-year-old stage 73-year-old stage

Benign prostatic hyperplasia Normal

Male

10x 3' v3 10x 3' v2

Cell