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Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
58,417 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+1
Osteoblast
Pharyngeal arch system
Pharyngeal arch system
Carnegie stage 14
+5
Carnegie stage 14
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Osteoblast
Mesenchymal cell
Tissue
Pharyngeal arch system
Developmental stage
Carnegie stage 14
Carnegie stage 13
Carnegie stage 20
Carnegie stage 17
Carnegie stage 12
Carnegie stage 16
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
zenodo.org
github.com
Human snRNA
Mouse snRNA
CELLxGENE
58,265 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
Sst gabaergic interneuron
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
58,096 cells
•
Krienen et al., 2023
A marmoset brain cell census reveals regional specialization of cellular identities
Explore
h5ad
Callithrix jacchus
Callithrix jacchus
Medium spiny neuron
Medium spiny neuron
Caudate nucleus
+2
Caudate nucleus
Prime adult stage
Prime adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Callithrix jacchus
Cell type
Medium spiny neuron
Tissue
Caudate nucleus
Nucleus accumbens
Putamen
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
assets.nemoarchive.org
submit.brainimagelibrary.org
Single Cell Portal
58,090 cells
Explore
Rattus norvegicus
Rattus norvegicus
T cell
+10
T cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Rattus norvegicus
Cell type
T cell
Endothelial cell
Oligodendrocyte
Erythroid lineage cell
Leukocyte
Smooth muscle cell
Adipocyte
Mesenchymal stem cell of adipose tissue
Mesothelial cell
B cell
Monocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Related Links
GEO series:GSE244451
Github:naultran/BAT_taPVAT_snRNAseq
CELLxGENE
58,054 cells
•
Maatz et al., 2025
The cellular and molecular cardiac tissue responses in human inflammatory cardiomyopathies after SARS-CoV-2 infection and COVID-19 vaccination
Explore
h5ad
Homo sapiens
Homo sapiens
Cardiac endothelial cell
+2
Cardiac endothelial cell
Apex of heart
+1
Apex of heart
21-year-old stage
+22
21-year-old stage
Myocarditis
+1
Myocarditis
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Cardiac endothelial cell
Smooth muscle cell
Pericyte
Tissue
Apex of heart
Heart left ventricle
Developmental stage
21-year-old stage
26-year-old stage
Sixth decade stage
61-year-old stage
52-year-old stage
30-year-old stage
29-year-old stage
38-year-old stage
Fifth decade stage
55-year-old stage
28-year-old stage
Third decade stage
49-year-old stage
24-year-old stage
Seventh decade stage
25-year-old stage
32-year-old stage
64-year-old stage
70-year-old stage
31-year-old stage
19-year-old stage
Eighth decade stage
27-year-old stage
Disease
Myocarditis
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
EGAS50000000769
PRJEB39602
EGAD00001009292
Reichart et al. (2022) Science
Litviňuková et al. (2020) Nature
CELLxGENE
57,918 cells
•
Watanabe et al., 2022
Anomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic Obstructive Pulmonary Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+20
Neutrophil
Lung parenchyma
Lung parenchyma
65-year-old stage
+14
65-year-old stage
Chronic obstructive pulmonary disease
+1
Chronic obstructive pulmonary disease
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Club cell
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Capillary endothelial cell
Leukocyte
Smooth muscle cell
Lung multiciliated epithelial cell
Macrophage
Pulmonary alveolar type 1 cell
Plasma cell
Cd4-positive, alpha-beta t cell
Vein endothelial cell
B cell
Monocyte
Conventional dendritic cell
Fibroblast
Pulmonary alveolar type 2 cell
Tissue
Lung parenchyma
Developmental stage
65-year-old stage
71-year-old stage
61-year-old stage
56-year-old stage
51-year-old stage
72-year-old stage
81-year-old stage
58-year-old stage
67-year-old stage
77-year-old stage
33-year-old stage
64-year-old stage
62-year-old stage
76-year-old stage
79-year-old stage
Disease
Chronic obstructive pulmonary disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE173896
CELLxGENE
57,855 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
57,723 cells
•
Chen et al., 2021
Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps
Explore
h5ad
Homo sapiens
Homo sapiens
Intestinal crypt stem cell of colon
+8
Intestinal crypt stem cell of colon
Ascending colon
+6
Ascending colon
66-year-old stage
+18
66-year-old stage
Tubulovillous adenoma
+5
Tubulovillous adenoma
Female
+1
Female
Trudrop
Trudrop
Cell
Cell
Organism
Homo sapiens
Cell type
Intestinal crypt stem cell of colon
Gut absorptive cell
Goblet cell
Tuft cell
Intestinal enteroendocrine cell
Neoplastic cell
Intestinal epithelial cell
Transit amplifying cell
Abnormal cell
Tissue
Ascending colon
Hepatic flexure of colon
Rectum
Transverse colon
Descending colon
Sigmoid colon
Hepatic cecum
Developmental stage
66-year-old stage
71-year-old stage
53-year-old stage
52-year-old stage
68-year-old stage
56-year-old stage
55-year-old stage
51-year-old stage
57-year-old stage
72-year-old stage
74-year-old stage
58-year-old stage
67-year-old stage
64-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
63-year-old stage
Disease
Tubulovillous adenoma
Tubular adenoma
Colorectal cancer
Normal
Hyperplastic polyp
Colon sessile serrated adenoma/polyp
Sex
Female
Male
Technology
Trudrop
Suspension type
Cell
Related Links
explore.data.humancellatlas.org
phs002371
humantumoratlas.org
CELLxGENE
57,422 cells
•
van Zyl et al., 2022
Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+7
Blood vessel endothelial cell
Iris
Iris
66-year-old stage
+4
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Schwann cell
Melanocyte
Lymphocyte
Smooth muscle cell of sphincter of pupil
Macrophage
Pigmented epithelial cell
Fibroblast
Tissue
Iris
Developmental stage
66-year-old stage
65-year-old stage
30-year-old stage
Adult stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE199013
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
57,414 cells
•
Krienen et al., 2023
A marmoset brain cell census reveals regional specialization of cellular identities
Explore
h5ad
Callithrix jacchus
Callithrix jacchus
Microglial cell
Microglial cell
Brodmann (1909) area 25
+31
Brodmann (1909) area 25
Late adult stage
+1
Late adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Callithrix jacchus
Cell type
Microglial cell
Tissue
Brodmann (1909) area 25
Lateral amygdaloid nucleus
Dorsolateral prefrontal cortex
Thalamic complex
Parietal cortex
Medial dorsal nucleus of thalamus
Primary visual cortex
Ventral lateral nucleus of thalamus
Brainstem
Temporal cortex
Lateral nuclear group of thalamus
Caudate nucleus
Prefrontal cortex
Anterior hypothalamic region
Temporal lobe
Central amygdaloid nucleus
Cerebellum lobule
Nucleus accumbens
Ventral thalamus
Basal forebrain
Primary somatosensory cortex
Primary auditory cortex
Brodmann (1909) area 23
Primary motor cortex
Dorsal thalamus
Hippocampal formation
Secondary visual cortex
Posterior hypothalamic region
Lateral geniculate body
Putamen
Medial amygdaloid nucleus
Amygdala
Developmental stage
Late adult stage
Prime adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
assets.nemoarchive.org
submit.brainimagelibrary.org
Single Cell Portal
57,056 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+5
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Microglial cell
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD721) (section 247)
Corresponding registered brain section (MD721) (section 248)
Corresponding registered brain section (MD721) (section 249)
Corresponding registered brain section (MD721) (section 250)
Corresponding registered brain section (MD721) (section 251)
Corresponding registered brain section (MD721) (section 252)
CELLxGENE
57,019 cells
•
Madissoon et al., 2019
scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+19
T cell
Lung parenchyma
Lung parenchyma
Sixth decade stage
+3
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Mononuclear leukocyte
Muscle cell
Blood vessel endothelial cell
Natural killer cell
Endothelial cell of lymphatic vessel
Pulmonary alveolar epithelial cell
Mast cell
Plasmacytoid dendritic cell
Lung multiciliated epithelial cell
Lung macrophage
Cd8-positive, alpha-beta cytotoxic t cell
Regulatory t cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Monocyte
Conventional dendritic cell
Fibroblast
Dendritic cell
Tissue
Lung parenchyma
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
cells.ucsc.edu
CGAP MACS Live Dead Separation
CGAP Human Spleen Dissociation, Tissue Stability Study
tissuestabilitycellatlas.org
explore.data.humancellatlas.org
CGAP Human Lung Dissociation - Tissue Stability Study
github.com
ncbi.nlm.nih.gov
CGAP Human Oesophagus Epithelium Dissociation - Tissue Stability
CGAP Freezing Human Tissue in Isopentane
ebi.ac.uk
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