Homo sapiens

Kidney loop of henle thin descending limb epithelial cell Cytotoxic t cell Kidney loop of henle thick ascending limb epithelial cell Renal interstitial pericyte Parietal epithelial cell Mast cell Epithelial cell of proximal tubule Podocyte Kidney connecting tubule epithelial cell Epithelial cell Plasma cell B cell Myofibroblast cell Non-classical monocyte Plasmacytoid dendritic cell Kidney interstitial fibroblast Kidney loop of henle thin ascending limb epithelial cell Leukocyte Kidney distal convoluted tubule epithelial cell Natural killer cell Kidney collecting duct intercalated cell Alternatively activated macrophage Conventional dendritic cell Monocyte Mature nk t cell Kidney collecting duct principal cell T cell Endothelial cell

Cortex of kidney

74-year-old stage 72-year-old stage 53-year-old stage 57-year-old stage 59-year-old stage 58-year-old stage 50-year-old stage 68-year-old stage 69-year-old stage 60-year-old stage 46-year-old stage 67-year-old stage 43-year-old stage 71-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Ionocyte Seromucus secreting cell Respiratory tract multiciliated cell Alpha-beta t cell Respiratory tract goblet cell Dendritic cell B cell Respiratory tract epithelial cell Respiratory basal cell Macrophage Deuterosomal cell Monocyte Squamous epithelial cell

Covid-19 Normal

Seq-well

Homo sapiens

Fibroblast Neutrophil Epithelial cell Dendritic cell B cell Eosinophil Macrophage T cell

Milk

35-year-old stage 29-year-old stage 33-year-old stage 32-year-old stage 31-year-old stage 34-year-old stage

Normal

Female

Seq-well

Cell

Homo sapiens

Lung pericyte Mast cell Dendritic cell, human Smooth muscle cell Neutrophil Stromal cell Plasma cell B cell Regulatory t cell Fibroblast of lung Pulmonary capillary endothelial cell Club cell Non-classical monocyte Pulmonary alveolar type 2 cell Cd8-positive, alpha-beta t cell Pulmonary alveolar type 1 cell Lung macrophage Natural killer cell Lung endothelial cell Erythrocyte Monocyte Mature nk t cell Basal cell Classical monocyte Mesothelial cell Cd4-positive, alpha-beta t cell Lung multiciliated epithelial cell Myeloid dendritic cell, human

Upper lobe of left lung

62-year-old stage

Covid-19

Male

10x 3' v3

Cell

Mus musculus

Seminal vesicle glandular cell Smooth muscle cell of prostate Luminal cell of prostate epithelium Prostate gland microvascular endothelial cell Urethra urothelial cell Fibroblast of connective tissue of prostate Leukocyte Basal cell of prostate epithelium

Prostate gland Urethra

2-month-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Vascular associated smooth muscle cell Bergmann glial cell Pericyte Leukocyte Ependymal cell Central nervous system macrophage Choroid plexus epithelial cell Neuron Endothelial cell

Pontine tegmentum

42-year-old stage 50-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

L2/3-6 intratelencephalic projecting glutamatergic neuron

Dorsolateral prefrontal cortex

78-year-old stage 80 year-old and over stage 72-year-old stage 83-year-old stage 85-year-old stage 81-year-old stage 82-year-old stage 42-year-old stage 86-year-old stage 70-year-old stage 75-year-old stage 50-year-old stage 89-year-old stage 68-year-old stage 29-year-old stage 77-year-old stage 69-year-old stage 88-year-old stage 87-year-old stage 80-year-old stage 84-year-old stage

Dementia Normal

Female Male

10x multiome 10x 3' v3

Nucleus

Mus musculus

Glial cell Mural cell Epithelial cell Stromal cell Dendritic cell B cell Adipocyte Endothelial cell of lymphatic vessel Natural killer cell Macrophage Mesenchymal stem cell of adipose tissue Monocyte Mesothelial cell T cell Endothelial cell

Normal

10x 3' v3

Homo sapiens

Secretory cell Best4+ colonocyte Malignant cell Enteroendocrine cell of colon Colon goblet cell Early colonocyte Tuft cell of colon Colonocyte Intestinal crypt stem cell of colon

Sigmoid colon Lung Transverse colon Caecum Liver Hepatic flexure of colon Descending colon Peritoneum Rectum Chest wall

35-year-old stage 39-year-old stage 62-year-old stage 78-year-old stage 73-year-old stage 74-year-old stage 53-year-old stage 49-year-old stage 52-year-old stage 48-year-old stage 70-year-old stage 40-year-old stage 45-year-old stage 41-year-old stage 55-year-old stage 75-year-old stage 50-year-old stage 64-year-old stage 68-year-old stage 60-year-old stage 37-year-old stage 65-year-old stage 44-year-old stage

Colorectal cancer Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Kidney loop of henle thin descending limb epithelial cell Kidney loop of henle ascending limb epithelial cell Parietal epithelial cell Myeloid cell Kidney proximal convoluted tubule epithelial cell Podocyte Kidney connecting tubule epithelial cell B cell Interstitial cell Renal principal cell Kidney loop of henle thin ascending limb epithelial cell Kidney distal convoluted tubule epithelial cell Renal intercalated cell T cell Endothelial cell

Kidney

62-year-old stage 83-year-old stage 82-year-old stage 70-year-old stage 79-year-old stage 64-year-old stage 68-year-old stage 66-year-old stage 69-year-old stage 63-year-old stage 60-year-old stage 84-year-old stage

Obstructive nephropathy Normal

Female Male

10x multiome

Nucleus

Macaca mulatta

Microglial cell

Primary motor cortex Perirhinal cortex Inferior temporal gyrus Midbrain Cerebrocerebellum Primary visual cortex Nucleus accumbens Dorsolateral prefrontal cortex Primary somatosensory cortex Medial dorsal nucleus of thalamus Lateral geniculate body Ventral lateral nucleus of thalamus Amygdala Brodmann (1909) area 19 Inferior parietal cortex Primary auditory cortex Cerebellar vermis Pons Entorhinal cortex Hippocampal formation Anterior cingulate cortex Prefrontal cortex Superior parietal cortex Superior temporal sulcus Corpus callosum Medulla oblongata Head of caudate nucleus

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Slow muscle cell Endothelial cell of vascular tree Mast cell Granulocyte Mesenchymal stem cell Intermediate monocyte Smooth muscle cell Myeloid dendritic cell Basophil Neutrophil Epithelial cell Plasma cell B cell Mesenchymal cell Capillary endothelial cell Pericyte Non-classical monocyte Skeletal muscle satellite stem cell Cd8-positive, alpha-beta t cell Endothelial cell of lymphatic vessel Tendon cell Natural killer cell Macrophage Erythrocyte Monocyte Mature nk t cell Mesothelial cell Cd4-positive, alpha-beta t cell T cell Fast muscle cell Endothelial cell Endothelial cell of artery

Muscle of abdomen Muscle of pelvic diaphragm

61-year-old stage 38-year-old stage 59-year-old stage 60-year-old stage 56-year-old stage

Normal

Female Male

10x 3' v3 Smart-seq2

Cell