Homo sapiens

Fibroblast Fibro/adipogenic progenitor cell Innate lymphoid cell Perivascular cell Memory t cell Mast cell Decidual cell Stromal cell of endometrium Hematopoietic precursor cell Epithelial cell Stromal cell Cd4-positive, alpha-beta memory t cell Uterine smooth muscle cell B cell Regulatory t cell Blood vessel endothelial cell Luminal endometrial multiciliated epithelial cell Circulating fibrocyte Myoepithelial cell Capillary endothelial cell Endothelial cell of uterus Glandular secretory epithelial cell Leukocyte Endothelial cell of venule Endothelial cell of lymphatic vessel Natural killer cell Macrophage Ciliated epithelial cell Cd8-positive, alpha-beta memory t cell Endothelial cell of artery

Myometrium Endometrium

32-year-old stage 28-year-old stage 31-year-old stage

Normal

Female

10x 3' v3

Cell

Mus musculus

Sertoli cell Granulosa cell Mesenchymal cell Leydig cell Ovarian surface epithelial cell Supporting cell Interstitial cell of ovary Mesothelial cell

Mesonephros Gonad

Theiler stage 26 5-day-old stage Theiler stage 24 Theiler stage 20 Theiler stage 22 Theiler stage 21 Theiler stage 27 Theiler stage 19

Normal

Female Male

10x 3' v3 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Fibroblast Schwann cell Odontoblast Mural cell Peripheral nervous system neuron Neutrophil Dendritic cell B cell Blood vessel endothelial cell Cd4-positive helper t cell Cd8-positive, alpha-beta t cell Natural killer cell Macrophage

Dental pulp

21-year-old stage Young adult stage 24-year-old stage 20-year-old stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Vascular associated smooth muscle cell Bergmann glial cell Pericyte Leukocyte Central nervous system macrophage Neuron Endothelial cell

Globus pallidus

42-year-old stage 50-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Mast cell Langerhans cell Dendritic cell, human Neutrophil progenitor cell Megakaryocyte Plasmacytoid dendritic cell, human Eosinophil Trem2-positive macrophage Macrophage Erythrocyte Conventional dendritic cell Monocyte

Epithelium of rectum Ileum lamina propria Ileal epithelium Epithelium of esophagus Stomach Ascending colon Sigmoid colon Transverse colon Pyloric antrum Caecum Colonic epithelium Colonic mucosa Mesenteric lymph node Ileum Vermiform appendix Descending colon Rectosigmoid junction Small intestine Duodenal epithelium Periodontium Body of stomach Intestine Buccal mucosa Esophagus Jejunum Epithelium of stomach Rectum Labial gland Duodenum Pylorus Gingiva Epithelium of small intestine Parotid gland Lamina propria of mucosa of colon Colon

54-year-old stage 35-year-old stage Adult stage 39-year-old stage 62-year-old stage Carnegie stage 19 74-year-old stage 26-year-old stage 72-year-old stage 9-year-old stage 21st week post-fertilization stage Third decade stage Carnegie stage 18 10th week post-fertilization stage 21-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage Juvenile stage (5-14 yo) 13-year-old stage Sixth decade stage Newborn stage (0-28 days) Embryonic stage 4-year-old stage 16th week post-fertilization stage Fourth decade stage 52-year-old stage 86-year-old stage 48-year-old stage Carnegie stage 22 19th week post-fertilization stage 70-year-old stage 6-year-old stage 12-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 10-year-old stage 2-month-old stage 55-year-old stage 23-year-old stage 58-year-old stage 14-year-old stage 2-year-old stage 75-year-old stage 22-year-old stage 50-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 15th week post-fertilization stage 77-year-old stage 11-year-old stage 11th week post-fertilization stage 13th week post-fertilization stage 33-year-old stage 69-year-old stage 32-year-old stage 12th week post-fertilization stage 28-year-old stage 76-year-old stage Young adult stage 5-year-old stage Fifth decade stage 31-year-old stage Carnegie stage 17 87-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage Prime adult stage 18th week post-fertilization stage 84-year-old stage 56-year-old stage 37-year-old stage Pediatric stage 9th week post-fertilization stage 46-year-old stage 24-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 17th week post-fertilization stage Seventh decade stage 44-year-old stage 34-year-old stage Carnegie stage 16

Crohn disease Inflammatory bowel disease Colorectal cancer Gastric cancer Normal Ulcerative colitis

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v1 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Vascular associated smooth muscle cell Pericyte Leukocyte Central nervous system macrophage Neuron Endothelial cell

Medial entorhinal cortex

42-year-old stage 50-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus

Homo sapiens

Periportal region hepatocyte Midzonal region hepatocyte Centrilobular region hepatocyte Hepatocyte

Caudate lobe of liver

Young adult stage Prime adult stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell Nucleus

Homo sapiens

Fibroblast Schwann cell Keratinocyte Ionocyte Mural cell Neutrophil Plasma cell Dendritic cell B cell Blood vessel endothelial cell Myoepithelial cell Salivary gland glandular cell Cd4-positive helper t cell Adult skeletal muscle myoblast Cd8-positive, alpha-beta t cell Endothelial cell of lymphatic vessel Natural killer cell Macrophage Acinar cell of salivary gland

Parotid gland Submandibular gland Minor salivary gland

39-year-old stage 62-year-old stage 26-year-old stage 53-year-old stage Sixth decade stage Fourth decade stage 48-year-old stage 40-year-old stage 59-year-old stage 69-year-old stage 28-year-old stage 56-year-old stage 24-year-old stage 34-year-old stage

Normal

Female Male

10x 3' v3

Cell

Mus musculus

Seminal vesicle glandular cell Luminal cell of prostate epithelium Urethra urothelial cell Basal cell of prostate epithelium

Prostate gland Urethra

2-month-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Mus musculus

Regular atrial cardiac myocyte Mesothelial cell of epicardium Myocyte of sinoatrial node Schwann cell Mast cell Valve endothelial cell Valve interstitial cell Regular ventricular cardiac myocyte Endocardial cell Melanocyte B cell Blood vessel endothelial cell Chondrocyte Vascular associated smooth muscle cell Pericyte Endothelial cell of lymphatic vessel Macrophage Fibroblast of cardiac tissue T cell Neuron Endothelial cell of artery

Heart

Theiler stage 26 Theiler stage 24 7-day-old stage 4-day-old stage Theiler stage 22 Theiler stage 27

Normal

Female Male

Drop-seq

Cell

Danio rerio

Neural progenitor cell Neuroblast (sensu vertebrata) Gabaergic neuron Glial cell Glycinergic neuron Photoreceptor cell Glutamatergic neuron

Habenula Brain Forebrain Telencephalon Diencephalon Zona limitans intrathalamica Multicellular anatomical structure

Hatching:pec-fin Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25 Segmentation:14-19 somites Pharyngula:high-pec Segmentation:26+ somites Hatching:long-pec Segmentation:20-25 somites Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte Vascular associated smooth muscle cell Bergmann glial cell Pericyte Leukocyte Ependymal cell Central nervous system macrophage Choroid plexus epithelial cell Neuron Endothelial cell

Pontine reticular formation

42-year-old stage 50-year-old stage 29-year-old stage

Normal

Male

10x 3' v3

Nucleus