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Disease
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Technology
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Cell
896
Nucleus
659
Data Source
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
54,313 cells
•
Chan et al., 2021
Signatures of plasticity, metastasis, and immunosuppression in an atlas of human small cell lung cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Epithelial cell
Epithelial cell
Pleural effusion
+5
Pleural effusion
69-year-old stage
+13
69-year-old stage
Small cell lung carcinoma
Small cell lung carcinoma
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Epithelial cell
Tissue
Pleural effusion
Lung
Axilla
Liver
Adrenal gland
Lymph node
Developmental stage
69-year-old stage
75-year-old stage
71-year-old stage
68-year-old stage
55-year-old stage
72-year-old stage
81-year-old stage
74-year-old stage
67-year-old stage
77-year-old stage
64-year-old stage
62-year-old stage
70-year-old stage
47-year-old stage
Disease
Small cell lung carcinoma
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
data.humantumoratlas.org
dbGaP Study:phs002371
Single Cell Portal
54,298 cells
Explore
Mus musculus
Mus musculus
Obsolete inhibitory neuron
+4
Obsolete inhibitory neuron
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Obsolete inhibitory neuron
Oligodendrocyte
Astrocyte of the cerebellum
Brain microvascular endothelial cell
Obsolete excitatory neuron
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD718) (section 197)
Corresponding registered brain section (MD718) (section 198)
Single Cell Portal
54,092 cells
Explore
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+8
Endothelial cell of lymphatic vessel
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endothelial cell
Lymphocyte
Macrophage
Mesothelial cell
Pericyte
Neuron
Vascular associated smooth muscle cell
Fibroblast
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
53,040 cells
•
Liang et al., 2023
A multi-omics atlas of the human retina at single-cell resolution
Explore
h5ad
Homo sapiens
Homo sapiens
Off-bipolar cell
+1
Off-bipolar cell
Peripheral region of retina
+2
Peripheral region of retina
65-year-old stage
+4
65-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Off-bipolar cell
On-bipolar cell
Tissue
Peripheral region of retina
Macula lutea proper
Fovea centralis
Developmental stage
65-year-old stage
84-year-old stage
78-year-old stage
73-year-old stage
83-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
UCSC Cell Browser:retina-atac
GEO series:GSE226108
HumanCellAtlas:9c20a245-f2c0-43ae-82c9-2232ec6b594f
CELLxGENE
53,015 cells
•
Andrews et al., 2024
Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver
Explore
h5ad
Homo sapiens
Homo sapiens
Periportal region hepatocyte
+2
Periportal region hepatocyte
Caudate lobe of liver
Caudate lobe of liver
Late adult stage
+2
Late adult stage
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Periportal region hepatocyte
Centrilobular region hepatocyte
Midzonal region hepatocyte
Tissue
Caudate lobe of liver
Developmental stage
Late adult stage
Prime adult stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
nature.com
GEO series:GSE240429
GEO series:GSE115469
GEO series:GSE243977
GEO series:GSE245620
GEO series:GSE247128
CELLxGENE
52,681 cells
•
Gray et al., 2022
A human breast atlas integrating single-cell proteomics and transcriptomics
Explore
h5ad
Homo sapiens
Homo sapiens
Progenitor cell of mammary luminal epithelium
+5
Progenitor cell of mammary luminal epithelium
Breast
Breast
65-year-old stage
+12
65-year-old stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Progenitor cell of mammary luminal epithelium
Vascular lymphangioblast
Basal cell
Leukocyte
Lactocyte
Fibroblast
Tissue
Breast
Developmental stage
65-year-old stage
53-year-old stage
52-year-old stage
39-year-old stage
55-year-old stage
50-year-old stage
57-year-old stage
35-year-old stage
25-year-old stage
33-year-old stage
41-year-old stage
31-year-old stage
36-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE180878
synapse.org:#!Synapse:syn26560310
HumanCellAtlas:9b876d31-0739-4e96-9846-f76e6a427279
BroadInstitute Single-Cell Portal:SCP1731/a-human-breast-atlas-integrating-single-cell-proteomics-and-transcriptomics
CELLxGENE
52,650 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Neuron
Neuron
Pontine reticular formation
+17
Pontine reticular formation
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Neuron
Tissue
Pontine reticular formation
Temporal fusiform gyrus
Intralaminar nuclear group
Parabrachial nucleus
Nucleus of medulla oblongata
Pontine tegmentum
Pontine nuclear group
Globus pallidus
Septal nuclear complex
Cerebellar nuclear complex
Dorsal tegmental nucleus
Midbrain tectum
Inferior olivary complex
Substantia nigra
Gray matter of midbrain
Pulvinar nucleus
Primary motor cortex
Mammillary body
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
CELLxGENE
52,638 cells
•
Kumar et al., 2023
A spatially resolved single-cell genomic atlas of the adult human breast
Explore
h5ad
Homo sapiens
Homo sapiens
Pericyte
+1
Pericyte
Breast
Breast
Adult stage
+1
Adult stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Pericyte
Vascular associated smooth muscle cell
Tissue
Breast
Developmental stage
Adult stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Github:navinlabcode/HumanBreastCellAtlas
breastatlas.org
HumanCellAtlas:1ffa2223-28a6-4133-a5a4-badd00faf4bc
GEO series:GSE195665
CELLxGENE
52,623 cells
•
Russ et al., 2021
A harmonized atlas of mouse spinal cord cell types and their spatial organization
Explore
h5ad
Mus musculus
Mus musculus
Oligodendrocyte precursor cell
+12
Oligodendrocyte precursor cell
Spinocerebellar tract
+3
Spinocerebellar tract
24-day-old stage
+13
24-day-old stage
Normal
Normal
Female
+1
Female
Split-seq
+5
Split-seq
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Oligodendrocyte precursor cell
Arachnoid barrier cell
Endothelial cell
Oligodendrocyte
Committed oligodendrocyte precursor
Schwann cell
Ependymal cell
Microglial cell
Leptomeningeal cell
Glial cell
Pericyte
Neuron
Astrocyte
Tissue
Spinocerebellar tract
Dorsal horn of spinal cord
Spinal cord
Lumbar spinal cord
Developmental stage
24-day-old stage
Theiler stage 27
4-week-old stage
23-day-old stage
21-day-old stage
Infant stage
27-day-old stage
25-day-old stage
2-week-old stage
1-week-old stage
22-day-old stage
Immature stage
26-day-old stage
2-month-old stage
Disease
Normal
Sex
Female
Male
Technology
Split-seq
10x 3' v1
Scrb-seq
Fluidigm c1-based library preparation
Drop-seq
10x 3' v2
Suspension type
Nucleus
Cell
CELLxGENE
52,482 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Preadipocyte
Preadipocyte
Subcutaneous adipose tissue
+1
Subcutaneous adipose tissue
71-year-old stage
+14
71-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Preadipocyte
Tissue
Subcutaneous adipose tissue
Omental fat pad
Developmental stage
71-year-old stage
53-year-old stage
54-year-old stage
68-year-old stage
29-year-old stage
51-year-old stage
57-year-old stage
49-year-old stage
24-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
41-year-old stage
36-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Drop-seq
Suspension type
Nucleus
Cell
Related Links
gitlab.com
GEO series:GSE176067
GEO series:GSE176171
dbGaP Study:phs002766
BroadInstitute Single-Cell Portal:SCP1376
CELLxGENE
52,404 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+14
Neutrophil
Ascending colon
+34
Ascending colon
66-year-old stage
+90
66-year-old stage
Gastric cancer
+5
Gastric cancer
Female
+1
Female
10x 3' v1
+5
10x 3' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Dendritic cell, human
Erythrocyte
Mast cell
Plasmacytoid dendritic cell, human
Mature neutrophil
Macrophage
Trem2-positive macrophage
Neutrophil progenitor cell
Eosinophil
Megakaryocyte
Langerhans cell
Monocyte
Conventional dendritic cell
Immature neutrophil
Tissue
Ascending colon
Colonic mucosa
Stomach
Duodenum
Colonic epithelium
Ileal epithelium
Rectosigmoid junction
Pyloric antrum
Caecum
Small intestine
Gingiva
Ileum
Ileum lamina propria
Lamina propria of mucosa of colon
Colon
Epithelium of rectum
Epithelium of esophagus
Intestine
Buccal mucosa
Body of stomach
Vermiform appendix
Epithelium of small intestine
Pylorus
Rectum
Esophagus
Jejunum
Duodenal epithelium
Transverse colon
Periodontium
Parotid gland
Descending colon
Sigmoid colon
Labial gland
Epithelium of stomach
Mesenteric lymph node
Developmental stage
66-year-old stage
69-year-old stage
Carnegie stage 19
37-year-old stage
75-year-old stage
Pediatric stage
19th week post-fertilization stage
21-year-old stage
13-year-old stage
21st week post-fertilization stage
34-year-old stage
65-year-old stage
26-year-old stage
43-year-old stage
Sixth decade stage
87-year-old stage
13th week post-fertilization stage
85-year-old stage
61-year-old stage
2-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
56-year-old stage
Fifth decade stage
55-year-old stage
84-year-old stage
15th week post-fertilization stage
50-year-old stage
80-year-old stage
28-year-old stage
51-year-old stage
17th week post-fertilization stage
57-year-old stage
12-year-old stage
72-year-old stage
12th week post-fertilization stage
Third decade stage
16th week post-fertilization stage
81-year-old stage
9th week post-fertilization stage
74-year-old stage
9-year-old stage
10th week post-fertilization stage
14-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
Seventh decade stage
58-year-old stage
Embryonic stage
59-year-old stage
Adult stage
67-year-old stage
18th week post-fertilization stage
Carnegie stage 17
2-month-old stage
32-year-old stage
77-year-old stage
33-year-old stage
Carnegie stage 22
45-year-old stage
62-year-old stage
86-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
31-year-old stage
Fourth decade stage
22-year-old stage
Newborn stage (0-28 days)
63-year-old stage
Carnegie stage 16
Eighth decade stage
76-year-old stage
Prime adult stage
5-year-old stage
11-year-old stage
6-year-old stage
Young adult stage
10-year-old stage
Carnegie stage 18
4-year-old stage
11th week post-fertilization stage
Juvenile stage (5-14 yo)
Disease
Gastric cancer
Inflammatory bowel disease
Colorectal cancer
Ulcerative colitis
Normal
Crohn disease
Sex
Female
Male
Technology
10x 3' v1
10x 5' v2
10x 5' transcription profiling
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
teichlab.org
ArrayExpress BioStudies:E-MTAB-14050
CELLxGENE
52,309 cells
•
van Zyl et al., 2022
Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+15
Blood vessel endothelial cell
Eye trabecular meshwork
+1
Eye trabecular meshwork
66-year-old stage
+3
66-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Endothelial cell of lymphatic vessel
Conjunctival epithelial cell
Endothelial cell
Mast cell
Corneal epithelial cell
Ciliary muscle cell
Basal cell
Schwann cell
Melanocyte
Lymphocyte
Goblet cell
Macrophage
Pericyte
Fibroblast
Corneal endothelial cell
Tissue
Eye trabecular meshwork
Corneo-scleral junction
Developmental stage
66-year-old stage
65-year-old stage
30-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
HumanCellAtlas:16e99159-78bc-44aa-b479-55a5e903bf50
GEO series:GSE199013
BroadInstitute Single-Cell Portal:SCP1841/cell-atlas-of-the-human-ocular-anterior-segment-tissue-specific-and-shared-cell-types
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