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Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
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2515
datasets
CELLxGENE
60,574 cells
•
Lengyel et al., 2022
A molecular atlas of the human postmenopausal fallopian tube and ovary from single-cell RNA and ATAC sequencing
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+10
Stromal cell
Ampulla of fallopian tube
+2
Ampulla of fallopian tube
65-year-old stage
+5
65-year-old stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Stromal cell
Natural killer cell
Endothelial cell of lymphatic vessel
Secretory cell
Endothelial cell
Mast cell
Smooth muscle cell
Macrophage
Ciliated epithelial cell
B cell
Pericyte
Tissue
Ampulla of fallopian tube
Fimbria of fallopian tube
Isthmus of fallopian tube
Developmental stage
65-year-old stage
61-year-old stage
55-year-old stage
72-year-old stage
62-year-old stage
70-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Drop-seq
Suspension type
Cell
Related Links
EGAS00001006780
CELLxGENE
60,540 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Osteoblast
+5
Osteoblast
Pharyngeal arch system
Pharyngeal arch system
Theiler stage 22
+5
Theiler stage 22
Normal
Normal
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Osteoblast
Ectodermal cell
Neural cell
Mesenchymal cell
Blood cell
Chondrocyte
Tissue
Pharyngeal arch system
Developmental stage
Theiler stage 22
Theiler stage 17
Theiler stage 19
Theiler stage 20
Theiler stage 21
Theiler stage 23
Disease
Normal
Sex
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
zenodo.org
github.com
Mouse snRNA
Human snRNA
CELLxGENE
60,411 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+4
Endothelial cell of lymphatic vessel
Ascending colon
+29
Ascending colon
66-year-old stage
+83
66-year-old stage
Gastric cancer
+5
Gastric cancer
Female
+1
Female
10x 3' v1
+5
10x 3' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endothelial cell
Endothelial cell of artery
Capillary endothelial cell
Vein endothelial cell
Tissue
Ascending colon
Colonic mucosa
Stomach
Duodenum
Colonic epithelium
Ileal epithelium
Rectosigmoid junction
Pyloric antrum
Caecum
Small intestine
Gingiva
Ileum
Ileum lamina propria
Colon
Epithelium of esophagus
Intestine
Buccal mucosa
Body of stomach
Vermiform appendix
Pylorus
Rectum
Esophagus
Jejunum
Transverse colon
Periodontium
Parotid gland
Descending colon
Sigmoid colon
Labial gland
Mesenteric lymph node
Developmental stage
66-year-old stage
69-year-old stage
Carnegie stage 19
37-year-old stage
75-year-old stage
Pediatric stage
19th week post-fertilization stage
21-year-old stage
13-year-old stage
34-year-old stage
65-year-old stage
26-year-old stage
Sixth decade stage
87-year-old stage
13th week post-fertilization stage
85-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
68-year-old stage
48-year-old stage
30-year-old stage
39-year-old stage
44-year-old stage
29-year-old stage
56-year-old stage
Fifth decade stage
55-year-old stage
84-year-old stage
15th week post-fertilization stage
50-year-old stage
80-year-old stage
28-year-old stage
51-year-old stage
17th week post-fertilization stage
57-year-old stage
12-year-old stage
72-year-old stage
12th week post-fertilization stage
Third decade stage
16th week post-fertilization stage
81-year-old stage
9th week post-fertilization stage
9-year-old stage
10th week post-fertilization stage
14-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
Seventh decade stage
58-year-old stage
Embryonic stage
59-year-old stage
Adult stage
67-year-old stage
18th week post-fertilization stage
Carnegie stage 17
2-month-old stage
32-year-old stage
77-year-old stage
33-year-old stage
Carnegie stage 22
45-year-old stage
62-year-old stage
86-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
31-year-old stage
Fourth decade stage
22-year-old stage
Newborn stage (0-28 days)
Carnegie stage 16
Eighth decade stage
76-year-old stage
Prime adult stage
11-year-old stage
6-year-old stage
Young adult stage
Carnegie stage 18
4-year-old stage
11th week post-fertilization stage
Juvenile stage (5-14 yo)
Disease
Gastric cancer
Inflammatory bowel disease
Colorectal cancer
Ulcerative colitis
Normal
Crohn disease
Sex
Female
Male
Technology
10x 3' v1
10x 5' v2
10x 5' transcription profiling
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
Single Cell Portal
59,859 cells
Explore
all.combined_v03_integrated_harmony_.RDS (rds)
Mus musculus
Mus musculus
T cell
+10
T cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
T cell
Granulocyte
Stromal cell
Colon endothelial cell
Lymph node lymphatic vessel endothelial cell
Enteroglial cell
Epithelial cell
Plasma cell
B cell
Myofibroblast cell
Mononuclear phagocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
59,738 cells
•
Ulrich et al., 2021
Cellular heterogeneity of human fallopian tubes in normal and hydrosalpinx disease states identified by scRNA-seq
Explore
h5ad
Homo sapiens
Homo sapiens
Blood vessel endothelial cell
+11
Blood vessel endothelial cell
Ampulla of fallopian tube
+3
Ampulla of fallopian tube
52-year-old stage
+3
52-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Blood vessel endothelial cell
Endothelial cell of lymphatic vessel
Secretory cell
Mature nk t cell
Mast cell
Smooth muscle cell
Macrophage
Ciliated epithelial cell
B cell
Pericyte
Myofibroblast cell
Fibroblast
Tissue
Ampulla of fallopian tube
Fimbria of fallopian tube
Fallopian tube
Isthmus of fallopian tube
Developmental stage
52-year-old stage
30-year-old stage
46-year-old stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
explore.data.humancellatlas.org
ncbi.nlm.nih.gov
CELLxGENE
59,605 cells
•
Calandrelli et al., 2020
Stress-induced RNA–chromatin interactions promote endothelial dysfunction
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of umbilical vein
Endothelial cell of umbilical vein
Endothelial cell
Endothelial cell
Newborn stage (0-28 days)
Newborn stage (0-28 days)
Normal
Normal
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of umbilical vein
Tissue
Endothelial cell
Developmental stage
Newborn stage (0-28 days)
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE135357
explore.data.humancellatlas.org
github.com
CELLxGENE
59,572 cells
•
Lee et al., 2020
Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Effector cd8-positive, alpha-beta t cell
+13
Effector cd8-positive, alpha-beta t cell
Blood
Blood
75-year-old stage
+13
75-year-old stage
Covid-19
+2
Covid-19
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Effector cd8-positive, alpha-beta t cell
Natural killer cell
Erythrocyte
Igg memory b cell
Cd8-positive, alpha-beta t cell
Platelet
Cd4-positive helper t cell
Classical monocyte
Intermediate monocyte
Effector cd4-positive, alpha-beta t cell
Igg-negative class switched memory b cell
Blood cell
Dendritic cell
Non-classical monocyte
Tissue
Blood
Developmental stage
75-year-old stage
61-year-old stage
54-year-old stage
68-year-old stage
38-year-old stage
56-year-old stage
82-year-old stage
67-year-old stage
62-year-old stage
70-year-old stage
46-year-old stage
78-year-old stage
63-year-old stage
73-year-old stage
Disease
Covid-19
Normal
Influenza
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE149689
explore.data.humancellatlas.org
cells.ucsc.edu
ebi.ac.uk
CELLxGENE
59,506 cells
•
Ballestar et al., 2020
Single cell profiling of COVID-19 patients: an international data resource from multiple tissues
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+9
Natural killer cell
Blood
Blood
80 year-old and over stage
+2
80 year-old and over stage
Covid-19
+1
Covid-19
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Alpha-beta t cell
Cd8-positive, alpha-beta t cell
Platelet
Plasmacytoid dendritic cell
Plasmablast
Cd4-positive, alpha-beta t cell
B cell
Monocyte
Dendritic cell
Tissue
Blood
Developmental stage
80 year-old and over stage
Adult stage
60-79 year-old stage
Disease
Covid-19
Normal
Sex
Technology
10x 5' v1
Suspension type
Cell
Related Links
Purification of PBMCs
MGH COVID-19 Effort Blood Processing Protocol for PBMC, Neutrophils and Plasma Isolation
COVID Blood Processing for scRNAseq
CITE-seq for PBMCs
COVID Airway Processing for scRNAseq
covid19cellatlas.org
github.com
CELLxGENE
59,505 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Midbrain-derived inhibitory neuron
+33
Midbrain-derived inhibitory neuron
Substantia nigra
Substantia nigra
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Midbrain-derived inhibitory neuron
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Amygdala excitatory neuron
Committed oligodendrocyte precursor
Dentate gyrus granule cell
Cerebellar granule cell
Hippocampal ca1-3 neuron
Lamp5 lhx6 neuron
Eccentric medium spiny neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Cerebellar inhibitory gabaergic interneuron
Ependymal cell
Microglial cell
Thalamic excitatory neuron
B cell
Pericyte
Cerebral cortex neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Medium spiny neuron
Mammillary body neuron
Hippocampal ca4 neuron
Tissue
Substantia nigra
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
59,341 cells
•
Litviňuková et al., 2020
Cells of the adult human heart
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
Fibroblast
Heart right ventricle
+5
Heart right ventricle
Sixth decade stage
+3
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
+1
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Tissue
Heart right ventricle
Right cardiac atrium
Apex of heart
Heart left ventricle
Left cardiac atrium
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Cell
Related Links
cells.ucsc.edu
ERP123138
support.10xgenomics.com
explore.data.humancellatlas.org
genome.ucsc.edu
teichlab.org
github.com
heartcellatlas.org
Single Cell Portal
59,286 cells
Explore
Homo sapiens
Homo sapiens
T cell
+6
T cell
Disease
+1
Disease
Seq-well
Seq-well
Organism
Homo sapiens
Cell type
T cell
Natural killer cell
Cytotoxic t cell
Plasmablast
B cell
Monocyte
Dendritic cell
Tissue
Developmental stage
Disease
Disease
Hiv infectious disease
Sex
Technology
Seq-well
Suspension type
CELLxGENE
59,217 cells
•
Reichart et al., 2022
Pathogenic variants damage cell composition and single cell transcription in cardiomyopathies
Explore
h5ad
Homo sapiens
Homo sapiens
Myeloid cell
Myeloid cell
Heart right ventricle
+3
Heart right ventricle
Pediatric stage
+7
Pediatric stage
Arrhythmogenic right ventricular cardiomyopathy
+3
Arrhythmogenic right ventricular cardiomyopathy
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Myeloid cell
Tissue
Heart right ventricle
Apex of heart
Heart left ventricle
Interventricular septum
Developmental stage
Pediatric stage
Sixth decade stage
Fifth decade stage
Third decade stage
Seventh decade stage
Postnatal stage
Fourth decade stage
Eighth decade stage
Disease
Arrhythmogenic right ventricular cardiomyopathy
Dilated cardiomyopathy
Normal
Non-compaction cardiomyopathy
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
github.com
zenodo.org
ega-archive.org
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