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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
51,876 cells
•
Szabo et al., 2019
Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease
Explore
h5ad
Homo sapiens
Homo sapiens
Mature alpha-beta t cell
+5
Mature alpha-beta t cell
Bronchopulmonary lymph node
+3
Bronchopulmonary lymph node
65-year-old stage
+1
65-year-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Mature alpha-beta t cell
Cd8-positive, alpha-beta t cell
Immature alpha-beta t cell
Cd4-positive, alpha-beta t cell
Cd8-positive, alpha-beta thymocyte
Cd4-positive, alpha-beta thymocyte
Tissue
Bronchopulmonary lymph node
Venous blood
Bone marrow
Lower lobe of left lung
Developmental stage
65-year-old stage
52-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
github.com
github.com
columbia.edu
ncbi.nlm.nih.gov
explore.data.humancellatlas.org
github.com
ebi.ac.uk
CELLxGENE
51,796 cells
•
Qiu et al., 2024
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Explore
h5ad
Mus musculus
Mus musculus
Intestine goblet cell
+3
Intestine goblet cell
Embryo
Embryo
Theiler stage 22
+15
Theiler stage 22
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Intestine goblet cell
Endo-epithelial cell
Extraembryonic cell
Intestinal enteroendocrine cell
Tissue
Embryo
Developmental stage
Theiler stage 22
Theiler stage 27
Theiler stage 24
Theiler stage 18
Theiler stage 25
Theiler stage 14
Theiler stage 16
Theiler stage 17
Theiler stage 15
Theiler stage 19
Theiler stage 26
Theiler stage 13
Theiler stage 20
Theiler stage 12
Theiler stage 21
Theiler stage 23
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GSE186069
GSE228590
omg.gs.washington.edu
Single Cell Portal
51,645 cells
Explore
Homo sapiens
Homo sapiens
Retinal ganglion cell
+10
Retinal ganglion cell
Normal
Normal
10x multiome
10x multiome
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off-bipolar cell
On-bipolar cell
Rod bipolar cell
Microglial cell
Retinal cone cell
Retinal rod cell
Retina horizontal cell
Amacrine cell
Mueller cell
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x multiome
Suspension type
CELLxGENE
51,645 cells
•
Wang et al., 2022
Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+10
Retinal ganglion cell
Retina
Retina
87-year-old stage
+3
87-year-old stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off-bipolar cell
On-bipolar cell
Rod bipolar cell
Microglial cell
Retinal cone cell
Retinal rod cell
Retina horizontal cell
Amacrine cell
Mueller cell
Astrocyte
Tissue
Retina
Developmental stage
87-year-old stage
85-year-old stage
55-year-old stage
74-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
SCP
GSE196235
Data summary page
Analysis code
BPNet Model Training
BPNet Models
explore.data.humancellatlas.org
CELLxGENE
51,552 cells
•
Domínguez Conde et al., 2022
Cross-tissue immune cell analysis reveals tissue-specific features in humans
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell, human
+5
Dendritic cell, human
Lung
+16
Lung
Sixth decade stage
+4
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 5' v2
+2
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Dendritic cell, human
Classical monocyte
Macrophage
Alveolar macrophage
Conventional dendritic cell
Non-classical monocyte
Tissue
Lung
Thymus
Duodenum
Jejunal epithelium
Caecum
Skeletal muscle tissue
Ileum
Liver
Thoracic lymph node
Spleen
Transverse colon
Jejunum lamina propria
Omentum
Blood
Bone marrow
Sigmoid colon
Mesenteric lymph node
Developmental stage
Sixth decade stage
56-year-old stage
Seventh decade stage
67-year-old stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
Suspension type
Cell
Related Links
E-MTAB-11536
pan-immune.cells.ucsc.edu
celltypist.org
singlecell.broadinstitute.org
explore.data.humancellatlas.org
CELLxGENE
51,367 cells
•
Bhat-Nakshatri et al., 2024
Single-nucleus chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+7
T cell
Upper outer quadrant of breast
+1
Upper outer quadrant of breast
Adult stage
Adult stage
Normal
Normal
Female
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Endothelial cell
Adipocyte
Macrophage
Luminal adaptive secretory precursor cell of mammary gland
Basal-myoepithelial cell of mammary gland
Luminal hormone-sensing cell of mammary gland
Fibroblast
Tissue
Upper outer quadrant of breast
Breast
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Technology
10x multiome
Suspension type
Nucleus
Related Links
GEO:GSE244594
HCA portal
CELLxGENE
51,227 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Mus musculus
Mus musculus
Preadipocyte
Preadipocyte
Periovarian fat pad
+2
Periovarian fat pad
19-week-old stage
19-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Preadipocyte
Tissue
Periovarian fat pad
Inguinal fat pad
Epididymal fat pad
Developmental stage
19-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
singlecell.broadinstitute.org
gitlab.com
scRNA-seq (GSE176067)
sNuc-seq (GSE176171)
phs002766
CELLxGENE
51,176 cells
•
Sim et al., 2021
Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor
Explore
h5ad
Homo sapiens
Homo sapiens
Erythrocyte
+7
Erythrocyte
Apical region of left ventricle
Apical region of left ventricle
19th week post-fertilization stage
+7
19th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Erythrocyte
Endothelial cell
Leukocyte
Smooth muscle cell
Mesothelial cell of epicardium
Cardiac muscle cell
Neuron
Fibroblast
Tissue
Apical region of left ventricle
Developmental stage
19th week post-fertilization stage
42-year-old stage
20th week post-fertilization stage
14-year-old stage
35-year-old stage
41-year-old stage
10-year-old stage
4-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE156707
bphipson.github.io
Single Cell Portal
51,020 cells
•
Hodis et al., 2022
Stepwise-edited, human melanoma models reveal mutations’ effect on tumor and microenvironment
Explore
Mus musculus
+1
Mus musculus
Neutrophil
+8
Neutrophil
Cutaneous melanoma
Cutaneous melanoma
10x 3' v3
+1
10x 3' v3
Organism
Mus musculus
Homo sapiens
Cell type
Neutrophil
Endothelial cell
Melanocyte
Epithelial cell
Plasmacytoid dendritic cell
Macrophage
Pericyte
Fibroblast
Dendritic cell
Tissue
Developmental stage
Disease
Cutaneous melanoma
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
CELLxGENE
50,992 cells
•
Ulrich et al., 2024
Cellular heterogeneity and dynamics of the human uterus in healthy premenopausal women
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell of endometrium
+29
Stromal cell of endometrium
Endometrium
+1
Endometrium
28-year-old stage
+2
28-year-old stage
Normal
Normal
Female
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Stromal cell of endometrium
Blood vessel endothelial cell
Stromal cell
Endothelial cell of venule
Natural killer cell
Endothelial cell of lymphatic vessel
Perivascular cell
Luminal endometrial multiciliated epithelial cell
Hematopoietic precursor cell
Mast cell
Uterine smooth muscle cell
Endothelial cell of artery
Capillary endothelial cell
Leukocyte
Epithelial cell
Endothelial cell of uterus
Cd8-positive, alpha-beta memory t cell
Myoepithelial cell
Macrophage
Innate lymphoid cell
Regulatory t cell
Glandular secretory epithelial cell
Fibro/adipogenic progenitor cell
Cd4-positive, alpha-beta memory t cell
Ciliated epithelial cell
B cell
Circulating fibrocyte
Decidual cell
Fibroblast
Memory t cell
Tissue
Endometrium
Myometrium
Developmental stage
28-year-old stage
32-year-old stage
31-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE260658
E-MTAB-10287
GSE111976
CELLxGENE
50,933 cells
•
Garcia-Alonso et al., 2022
Single-cell roadmap of human gonadal development
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+7
Granulosa cell
Mesonephros
+1
Mesonephros
Theiler stage 22
+7
Theiler stage 22
Normal
Normal
Female
+1
Female
10x 5' v1
+2
10x 5' v1
Cell
Cell
Organism
Mus musculus
Cell type
Granulosa cell
Supporting cell
Sertoli cell
Ovarian surface epithelial cell
Interstitial cell of ovary
Mesenchymal cell
Mesothelial cell
Leydig cell
Tissue
Mesonephros
Gonad
Developmental stage
Theiler stage 22
Theiler stage 27
Theiler stage 24
5-day-old stage
Theiler stage 19
Theiler stage 26
Theiler stage 20
Theiler stage 21
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
Human scRNA-seq (E-MTAB-10551)
Mouse scRNA-seq (E-MTAB-11480)
Reproductive Cell Atlas
VenTo Lab
CELLxGENE
50,927 cells
•
Matuck et al., 2026
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+12
Neutrophil
Molar dental pulp
+1
Molar dental pulp
21-year-old stage
+3
21-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Blood vessel endothelial cell
Natural killer cell
Cd8-positive, alpha-beta t cell
Cd4-positive helper t cell
Peripheral nervous system neuron
Schwann cell
Macrophage
Mural cell
Odontoblast
B cell
Fibroblast
Dendritic cell
Tissue
Molar dental pulp
Dental pulp
Developmental stage
21-year-old stage
24-year-old stage
20-year-old stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
github.com
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