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Cell
896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
30,482 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Homo sapiens
Homo sapiens
Mesothelial cell
Mesothelial cell
Omental fat pad
Omental fat pad
53-year-old stage
+7
53-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Mesothelial cell
Tissue
Omental fat pad
Developmental stage
53-year-old stage
68-year-old stage
29-year-old stage
24-year-old stage
35-year-old stage
41-year-old stage
36-year-old stage
73-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
gitlab.com
GEO series:GSE176067
GEO series:GSE176171
dbGaP Study:phs002766
BroadInstitute Single-Cell Portal:SCP1376
Single Cell Portal
30,251 cells
Explore
Mus musculus
Mus musculus
Oligodendrocyte
+3
Oligodendrocyte
Normal
Normal
10x 3' v2
10x 3' v2
Organism
Mus musculus
Cell type
Oligodendrocyte
Brain microvascular endothelial cell
Obsolete excitatory neuron
Astrocyte
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v2
Suspension type
Related Links
Corresponding registered brain section (MD720) (section 247)
Corresponding registered brain section (MD720) (section 248)
Corresponding registered brain section (MD720) (section 249)
Corresponding registered brain section (MD720) (section 250)
Corresponding registered brain section (MD720) (section 251)
Corresponding registered brain section (MD720) (section 252)
CELLxGENE
30,206 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Endothelial cell
+9
Endothelial cell
Kidney
Kidney
6-month-old stage
6-month-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
Github:MacoskoLab/slideseq-tools
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
CELLxGENE
30,182 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+12
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
Github:marshalljamie/Kidney-Slide-seq
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
GEO series:GSE190094
CELLxGENE
30,132 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+25
T cell
Nucleus accumbens
Nucleus accumbens
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Amygdala excitatory neuron
Committed oligodendrocyte precursor
Lamp5 lhx6 neuron
Eccentric medium spiny neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Ependymal cell
Microglial cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Medium spiny neuron
Tissue
Nucleus accumbens
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
CELLxGENE
30,125 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Valve interstitial cell
+5
Valve interstitial cell
Outflow tract
+1
Outflow tract
13th week post-fertilization stage
+2
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Valve interstitial cell
Endothelial cell
Neural cell
Cardiac mesenchymal cell
Cardiac muscle cell
Hematopoietic cell
Tissue
Outflow tract
Outflow tract myocardium
Developmental stage
13th week post-fertilization stage
Adult stage
Carnegie stage 17
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
ebi.ac.uk
ebi.ac.uk
ebi.ac.uk
ebi.ac.uk
DOI:10.7554/eLife.107748.1
CELLxGENE
30,084 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+28
Neutrophil
Ascending colon
+2
Ascending colon
37-year-old stage
+4
37-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Intestinal crypt stem cell of colon
Natural killer cell
Gamma-delta t cell
Enterochromaffin-like cell
Best4+ enterocyte
Mature nk t cell
Colon endothelial cell
Mast cell
Cd8-positive, alpha-beta t cell
Colon macrophage
Enteroglial cell
Myeloid dendritic cell
Transit amplifying cell of colon
Tuft cell of colon
Paneth cell of colon
Innate lymphoid cell
Regulatory t cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Myeloid leukocyte
Monocyte
Large intestine goblet cell
Enterocyte of epithelium of large intestine
Myofibroblast cell
Fibroblast
Type l enteroendocrine cell
Tissue
Ascending colon
Large intestine
Sigmoid colon
Developmental stage
37-year-old stage
61-year-old stage
56-year-old stage
59-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
30,027 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Amygdala excitatory neuron
+5
Amygdala excitatory neuron
Corticomedial nuclear complex
+14
Corticomedial nuclear complex
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
Snm3c-seq
Snm3c-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Amygdala excitatory neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
L6b glutamatergic cortical neuron
L6 corticothalamic-projecting glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Tissue
Corticomedial nuclear complex
Primary visual cortex
Piriform cortex
Middle temporal gyrus
Septal nuclear complex
Lateral entorhinal cortex
Agranular insular cortex
Nucleus accumbens
Substantia innominata
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Bed nucleus of stria terminalis
Putamen
Amygdala
Developmental stage
42-year-old stage
29-year-old stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Snm3c-seq
Suspension type
Nucleus
Related Links
GEO series:GSE215353
NeMo archive:dat-jx4eu3g
CELLxGENE
30,027 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Amygdala excitatory neuron
+5
Amygdala excitatory neuron
Corticomedial nuclear complex
+14
Corticomedial nuclear complex
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
Snm3c-seq
Snm3c-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Amygdala excitatory neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
L5 extratelencephalic projecting glutamatergic cortical neuron
L6b glutamatergic cortical neuron
L6 corticothalamic-projecting glutamatergic cortical neuron
Near-projecting glutamatergic cortical neuron
Tissue
Corticomedial nuclear complex
Primary visual cortex
Piriform cortex
Middle temporal gyrus
Septal nuclear complex
Lateral entorhinal cortex
Agranular insular cortex
Nucleus accumbens
Substantia innominata
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Bed nucleus of stria terminalis
Putamen
Amygdala
Developmental stage
42-year-old stage
29-year-old stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Snm3c-seq
Suspension type
Nucleus
Related Links
GEO series:GSE215353
NeMo archive:dat-jx4eu3g
CELLxGENE
30,022 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Direct pathway medium spiny neuron
+8
Direct pathway medium spiny neuron
Corticomedial nuclear complex
+16
Corticomedial nuclear complex
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
Snm3c-seq
Snm3c-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Direct pathway medium spiny neuron
Pvalb chandelier gabaergic interneuron
Lamp5 gabaergic interneuron
Vip gabaergic interneuron
Indirect pathway medium spiny neuron
Pvalb gabaergic interneuron
Central nervous system neuron
Sncg gabaergic interneuron
Sst gabaergic interneuron
Tissue
Corticomedial nuclear complex
Primary visual cortex
Globus pallidus
Piriform cortex
Middle temporal gyrus
Septal nuclear complex
Lateral entorhinal cortex
Agranular insular cortex
Nucleus accumbens
Substantia innominata
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Body of caudate nucleus
Bed nucleus of stria terminalis
Putamen
Amygdala
Developmental stage
42-year-old stage
29-year-old stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Snm3c-seq
Suspension type
Nucleus
Related Links
NeMo archive:dat-jx4eu3g
GEO series:GSE215353
CELLxGENE
30,022 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Direct pathway medium spiny neuron
+8
Direct pathway medium spiny neuron
Corticomedial nuclear complex
+16
Corticomedial nuclear complex
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
Snm3c-seq
Snm3c-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Direct pathway medium spiny neuron
Pvalb chandelier gabaergic interneuron
Lamp5 gabaergic interneuron
Vip gabaergic interneuron
Indirect pathway medium spiny neuron
Pvalb gabaergic interneuron
Central nervous system neuron
Sncg gabaergic interneuron
Sst gabaergic interneuron
Tissue
Corticomedial nuclear complex
Primary visual cortex
Globus pallidus
Piriform cortex
Middle temporal gyrus
Septal nuclear complex
Lateral entorhinal cortex
Agranular insular cortex
Nucleus accumbens
Substantia innominata
Primary motor cortex
Brodmann (1909) area 24
Brodmann (1909) area 46
Body of caudate nucleus
Bed nucleus of stria terminalis
Putamen
Amygdala
Developmental stage
42-year-old stage
29-year-old stage
58-year-old stage
Disease
Normal
Sex
Male
Technology
Snm3c-seq
Suspension type
Nucleus
Related Links
NeMo archive:dat-jx4eu3g
GEO series:GSE215353
ASAP
30,003 cells
•
Li et al., 2022
Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Explore
h5ad
Drosophila melanogaster
Drosophila melanogaster
Neuron
+15
Neuron
Trachea
Trachea
Day 5 of adulthood
Day 5 of adulthood
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Organism
Drosophila melanogaster
Cell type
Neuron
Fat cell
Tracheolar cell
Glial cell
Somatic precursor cell
Male germline cell
Hemocyte
Eye photoreceptor cell
Epithelial cell
Muscle cell
Adult tracheocyte
Adult neuron
Sensory neuron
Oenocyte
Neuron
Female germline cell
Tissue
Trachea
Developmental stage
Day 5 of adulthood
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Related Links
ArrayExpress BioStudies:E-MTAB-10519
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