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Technology
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Cell
934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
32,493 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
Oligodendrocyte precursor cell
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+23
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
43-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
32,458 cells
•
Martin et al., 2019
Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy
Explore
h5ad
Homo sapiens
Homo sapiens
Transit amplifying cell of small intestine
+17
Transit amplifying cell of small intestine
Ileum lamina propria
Ileum lamina propria
Prime adult stage
Prime adult stage
Normal
Normal
10x 3' v1
+1
10x 3' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Transit amplifying cell of small intestine
Endothelial cell of lymphatic vessel
Endothelial cell
Alpha-beta t cell
Mast cell
Innate lymphoid cell
Paneth cell of epithelium of small intestine
Enteroendocrine cell of small intestine
Enterocyte of epithelium proper of ileum
Glial cell
Plasma cell
Ileal goblet cell
Smooth muscle fiber of ileum
B cell
Pericyte
Progenitor cell
Fibroblast
Mononuclear phagocyte
Tissue
Ileum lamina propria
Developmental stage
Prime adult stage
Disease
Normal
Sex
Technology
10x 3' v1
10x 3' v2
Suspension type
Cell
Related Links
ncbi.nlm.nih.gov
github.com
scdissector.org
explore.data.humancellatlas.org
ebi.ac.uk
cells.ucsc.edu
CELLxGENE
32,444 cells
•
Ivanova et al., 2023
mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+3
Natural killer cell
Blood
Blood
Sixth decade stage
+3
Sixth decade stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Gamma-delta t cell
Mucosal invariant t cell
Cd16-negative, cd56-bright natural killer cell, human
Tissue
Blood
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Fourth decade stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
GSE247917
CELLxGENE
32,306 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Midbrain-derived inhibitory neuron
+27
Midbrain-derived inhibitory neuron
Midbrain tectum
Midbrain tectum
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Midbrain-derived inhibitory neuron
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Committed oligodendrocyte precursor
Cerebellar granule cell
Medial ganglionic eminence derived interneuron
Cerebellar inhibitory gabaergic interneuron
Ependymal cell
Microglial cell
Thalamic excitatory neuron
Choroid plexus epithelial cell
Bergmann glial cell
B cell
Pericyte
Cerebral cortex neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Purkinje cell
Vascular associated smooth muscle cell
Astrocyte
Unipolar brush cell
Fibroblast
Tissue
Midbrain tectum
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
32,157 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+24
T cell
Brodmann (1909) area 24
Brodmann (1909) area 24
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Amygdala excitatory neuron
Committed oligodendrocyte precursor
Lamp5 lhx6 neuron
Eccentric medium spiny neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Microglial cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Medium spiny neuron
Tissue
Brodmann (1909) area 24
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
32,070 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
Single Cell Portal
32,035 cells
Explore
Homo sapiens
Homo sapiens
Cd4-positive helper t cell
Cd4-positive helper t cell
Normal
Normal
10x scatac-seq
10x scatac-seq
Organism
Homo sapiens
Cell type
Cd4-positive helper t cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x scatac-seq
Suspension type
CELLxGENE
31,954 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Diabetic kidney disease
Diabetic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Diabetic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
31,924 cells
•
Johansen et al., 2023
Interindividual variation in human cortical cell type abundance and expression
Explore
h5ad
Homo sapiens
Homo sapiens
L2/3-6 intratelencephalic projecting glutamatergic neuron
L2/3-6 intratelencephalic projecting glutamatergic neuron
Neocortex
Neocortex
Adult stage
Adult stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
L2/3-6 intratelencephalic projecting glutamatergic neuron
Tissue
Neocortex
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
Allen Brain Map
Reference middle temporal gyrus taxonomy
Allen Brain Map Patch-seq
assets.nemoarchive.org
github.com
CELLxGENE
31,899 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+23
T cell
Temporal fusiform gyrus
Temporal fusiform gyrus
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Committed oligodendrocyte precursor
Cerebellar granule cell
Lamp5 lhx6 neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Microglial cell
B cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Tissue
Temporal fusiform gyrus
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
31,749 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Stromal cell
+5
Stromal cell
Testis
+2
Testis
Carnegie stage 19
+6
Carnegie stage 19
Normal
Normal
Male
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Stromal cell
Endothelial cell
Sertoli cell
Smooth muscle cell
Epithelial cell
Germ cell
Tissue
Testis
Mesonephros
Epididymis
Developmental stage
Carnegie stage 19
17th week post-fertilization stage
12th week post-fertilization stage
16th week post-fertilization stage
9th week post-fertilization stage
18th week post-fertilization stage
11th week post-fertilization stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GSE181558
github.com
CELLxGENE
31,696 cells
•
Bhat-Nakshatri et al., 2021
A single-cell atlas of the healthy breast tissues reveals clinically relevant clusters of breast epithelial cells
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell of lymphatic vessel
+5
Endothelial cell of lymphatic vessel
Upper outer quadrant of breast
Upper outer quadrant of breast
21-year-old stage
+6
21-year-old stage
Normal
Normal
Female
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell of lymphatic vessel
Endocrine cell
Luminal adaptive secretory precursor cell of mammary gland
Basal-myoepithelial cell of mammary gland
Luminal hormone-sensing cell of mammary gland
B cell
Tissue
Upper outer quadrant of breast
Developmental stage
21-year-old stage
42-year-old stage
43-year-old stage
44-year-old stage
35-year-old stage
Adult stage
60-year-old stage
Disease
Normal
Sex
Female
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
explore.data.humancellatlas.org
ncbi.nlm.nih.gov
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