Homo sapiens

Kidney loop of henle thin descending limb epithelial cell Kidney loop of henle thick ascending limb epithelial cell Renal interstitial pericyte Parietal epithelial cell Mast cell Epithelial cell of proximal tubule Podocyte Kidney connecting tubule epithelial cell Neutrophil Mononuclear phagocyte Plasma cell B cell Non-classical monocyte Kidney interstitial alternatively activated macrophage Plasmacytoid dendritic cell, human Kidney interstitial fibroblast Kidney loop of henle thin ascending limb epithelial cell Lymphocyte Neural cell Kidney distal convoluted tubule epithelial cell Papillary tips cell Kidney collecting duct intercalated cell Conventional dendritic cell Kidney collecting duct principal cell T cell Endothelial cell

Cortex of kidney Renal papilla Kidney Renal medulla

54-year-old stage 35-year-old stage 39-year-old stage 53-year-old stage Third decade stage 57-year-old stage Sixth decade stage 49-year-old stage 42-year-old stage 36-year-old stage Fourth decade stage 52-year-old stage 48-year-old stage 70-year-old stage 40-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 14-year-old stage 64-year-old stage 29-year-old stage 66-year-old stage 69-year-old stage 76-year-old stage Fifth decade stage 31-year-old stage 63-year-old stage 56-year-old stage 43-year-old stage Seventh decade stage 47-year-old stage

Chronic kidney disease Acute kidney failure Normal

Female Male

10x 3' v3

Nucleus Cell

Mus musculus

Pancreatic d cell Pancreatic pp cell Pancreatic ductal cell Schwann cell Pancreatic a cell Pancreatic acinar cell Hematopoietic cell Cell Type b pancreatic cell Pancreatic stellate cell Pancreatic endocrine cell Endothelial cell

Islet of langerhans Pancreas

2-month-old stage 8-week-old stage 5-week-old stage Theiler stage 23 20-month-old stage and over Theiler stage 20 Theiler stage 22 Theiler stage 21 4-month-old stage 3-month-old stage 6-month-old stage 2-week-old stage

Endocrine pancreas disorder Type 1 diabetes mellitus Type 2 diabetes mellitus Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Danio rerio

Ionocyte Epidermal cell Peridermal cell Epidermal mucus secreting cell

Cloaca Periderm Integument Ectoderm-derived structure Skin epidermis Taste bud Multicellular anatomical structure Head

Hatching:pec-fin Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25 Segmentation:14-19 somites Pharyngula:high-pec Segmentation:26+ somites Hatching:long-pec Segmentation:20-25 somites Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Iga plasma cell Fibroblast Enteroendocrine cell Memory t cell Mast cell Enterocyte Igg plasma cell Vein endothelial cell Type g enteroendocrine cell Memory b cell Dendritic cell Gamma-delta t cell Capillary endothelial cell Glandular cell of esophagus Natural t-regulatory cell Intestine goblet cell Cd4-positive helper t cell Activated cd8-positive, alpha-beta t cell P/d1 enteroendocrine cell Mucous neck cell of gastric gland Natural killer cell Macrophage Foveolar cell of stomach Epithelial cell of esophagus Erythrocyte Monocyte Parietal cell Peptic cell Stem cell Endothelial cell of artery

Ileum Submucosal esophageal gland Body of stomach Rectum Cardia of stomach Esophagogastric junction Duodenum Lower esophagus Colon

54-year-old stage 62-year-old stage 27-year-old stage 80 year-old and over stage 73-year-old stage 74-year-old stage 53-year-old stage 83-year-old stage 57-year-old stage 82-year-old stage 42-year-old stage 36-year-old stage 86-year-old stage 48-year-old stage 70-year-old stage 45-year-old stage 41-year-old stage 55-year-old stage 58-year-old stage 50-year-old stage 51-year-old stage 64-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 88-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage 84-year-old stage 56-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 71-year-old stage 34-year-old stage

Barrett esophagus Gastric intestinal metaplasia Gastritis Gastric cancer Normal

Female Male

10x 3' v3 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Cultured cell

Mcf-7

Normal

Sci-plex

Nucleus

Sus scrofa Macaca mulatta Homo sapiens

Myeloid cell Astrocyte Neuroblast (sensu vertebrata) Oligodendrocyte precursor cell Oligodendrocyte Pyramidal neuron Vascular associated smooth muscle cell Pericyte Brain vascular cell Granule cell Neural cell Leukocyte Macrophage Dentate gyrus neuron Microglial cell T cell Hippocampal astrocyte Neuron Endothelial cell Endothelial cell of artery Hippocampal granule cell

Dentate gyrus of hippocampal formation Subiculum Ammon's horn Entorhinal cortex Hippocampal field Ca1 field of hippocampus

48-year-old stage 50-year-old stage 51-year-old stage 79-year-old stage 44-year-old stage

Normal

Female Male

10x genomics v3

Homo sapiens

Neuron

Intralaminar nuclear group Primary motor cortex Perirhinal cortex Cerebellar nuclear complex Inferior temporal gyrus Dentate gyrus of hippocampal formation Cerebrocerebellum Primary visual cortex Ventral anterior nucleus of thalamus Brodmann (1909) area 46 Subthalamic nucleus Globus pallidus Nucleus accumbens Primary somatosensory cortex Midbrain tectum Lateral nuclear group of thalamus Inferior frontal gyrus Epithalamus Cuneus cortex Retrosplenial region Medial dorsal nucleus of thalamus Medial zone of hypothalamus Putamen Lateral geniculate body Brodmann (1909) area 25 Nucleus of medulla oblongata Red nucleus Corticomedial nuclear complex Nucleus of dorsal thalamus Brodmann (1909) area 14 Pontine reticular formation Brodmann (1909) area 19 Midbrain nucleus Piriform cortex Pontine tegmentum Accessory basal amygdaloid nucleus Anterior olfactory nucleus Hypothalamus Granular insular cortex Centromedian nucleus of thalamus Brodmann (1909) area 32 Superior temporal gyrus Substantia nigra Primary auditory cortex Brodmann (1909) area 24 Cerebellar vermis Uncal ca1 Anterior cortical amygdaloid nucleus Lateral entorhinal cortex Septal nuclear complex Basolateral amygdaloid nuclear complex Spinal cord Preoptic area Middle temporal gyrus Parabrachial nucleus Brodmann (1909) area 38 Agranular insular cortex Pulvinar nucleus Body of caudate nucleus Temporal fusiform gyrus Extrastriate cortex Brodmann (1909) area 23 Medial entorhinal cortex Lateral amygdaloid nucleus Supraoptic nucleus Posterior parahippocampal gyrus Pontine nuclear group Median tuberal portion Superior parietal cortex Dorsal tegmental nucleus Substantia innominata Bed nucleus of stria terminalis Brodmann (1909) area 13 Medial geniculate body Inferior olivary complex Gray matter of midbrain Mammillary body Anterior nuclear group Central amygdaloid nucleus Subicular complex Brodmann (1909) area 43 Hippocampal field Rostral ca3 Brodmann (1909) area 40 Claustrum of brain Pretectal region Lateral posterior nucleus of thalamus

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Hepatocyte

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 13 Theiler stage 24 Theiler stage 15 Theiler stage 14 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 25 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Neuroblast (sensu vertebrata)

Midbrain Midbrain tectum Striatum Cortex Hypothalamus Cerebral subcortex Metencephalon Basal forebrain Brain Forebrain Pons Cerebellum Entorhinal cortex Telencephalon Hippocampal formation Occipital cortex Diencephalon Choroid plexus epithelium Upper layers of the cortex Hindbrain Caudate-putamen Lower layers of the cortex Cerebellar peduncular complex Frontal cortex Medulla oblongata Head Dorsal plus ventral thalamus

Carnegie stage 20 Carnegie stage 18 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 15 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Glutamatergic neuron

Brodmann (1909) area 17 Brodmann (1909) area 7 Brodmann (1909) area 9

62-year-old stage 73-year-old stage 83-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage 82-year-old stage 111-year-old stage 52-year-old stage 86-year-old stage 70-year-old stage 58-year-old stage 75-year-old stage 79-year-old stage 89-year-old stage 68-year-old stage 66-year-old stage 93-year-old stage 76-year-old stage 88-year-old stage 87-year-old stage 97-year-old stage 80-year-old stage 91-year-old stage 92-year-old stage 67-year-old stage 71-year-old stage

Normal Alzheimer disease

Female Male

10x 3' v3 Drop-seq 10x 3' v2

Nucleus

Homo sapiens

Iga plasma cell Innate lymphoid cell Plasmablast Schwann cell Keratinocyte Mast cell Igg plasma cell Vein endothelial cell Hair follicular keratinocyte Smooth muscle cell Melanocyte Neutrophil Dendritic cell Gamma-delta t cell Regulatory t cell Sweat secreting cell Capillary endothelial cell Pericyte Sebaceous gland cell Skin fibroblast Cd8-positive, alpha-beta t cell Endothelial cell of lymphatic vessel Natural killer cell Macrophage T cell Naive b cell Endothelial cell of artery

Atopic eczema Normal

10x 3' v3 10x 3' v2

Macaca mulatta

Oligodendrocyte

Primary motor cortex Perirhinal cortex Inferior temporal gyrus Midbrain Cerebrocerebellum Primary visual cortex Nucleus accumbens Dorsolateral prefrontal cortex Primary somatosensory cortex Medial dorsal nucleus of thalamus Lateral geniculate body Ventral lateral nucleus of thalamus Amygdala Brodmann (1909) area 19 Inferior parietal cortex Primary auditory cortex Cerebellar vermis Pons Entorhinal cortex Hippocampal formation Anterior cingulate cortex Prefrontal cortex Superior parietal cortex Superior temporal sulcus Corpus callosum Medulla oblongata Head of caudate nucleus

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus