Homo sapiens

T cell Natural killer cell Gamma-delta t cell Cd8-positive, alpha-beta t cell Double-positive, alpha-beta thymocyte Immature alpha-beta t cell Cd8-positive, alpha-beta memory t cell Regulatory t cell Cd4-positive, alpha-beta t cell Cd8-positive, alpha-beta regulatory t cell Early t lineage precursor Double negative thymocyte

Thymus

13th week post-fertilization stage 2-year-old stage 3-month-old stage 14th week post-fertilization stage 15th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 6-month-old stage 18th week post-fertilization stage 10-month-old stage 2-month-old stage Newborn stage (0-28 days) 5-month-old stage 24th week post-fertilization stage 14-month-old stage

Normal

Female Male

10x 5' v2 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cd1c-positive myeloid dendritic cell Cd141-positive myeloid dendritic cell Plasmacytoid dendritic cell Axl+ dendritic cell, human Cd14-low, cd16-positive monocyte Cd14-positive, cd16-negative classical monocyte

Blood

66-year-old stage 69-year-old stage 75-year-old stage 65-year-old stage 42-year-old stage 89-year-old stage 43-year-old stage 87-year-old stage 71-year-old stage 85-year-old stage 53-year-old stage 61-year-old stage 88-year-old stage 52-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 44-year-old stage 56-year-old stage 55-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 51-year-old stage 57-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 80 year-old and over stage 49-year-old stage 58-year-old stage 59-year-old stage 67-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 63-year-old stage 47-year-old stage 76-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage 40-year-old stage

Cytomegalovirus infection Normal

Female Male

10x gene expression flex

Cell

Homo sapiens

Natural killer cell Gamma-delta t cell Cd8-positive, alpha-beta t cell Mature nk t cell, human Lymphocyte Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Cd16-positive, cd56-dim natural killer cell, human Regulatory t cell Plasmablast Plasma cell Cd4-positive, alpha-beta memory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Naive b cell Cd16-negative, cd56-bright natural killer cell, human

Blood

37-year-old stage 21-year-old stage 34-year-old stage 42-year-old stage 26-year-old stage 43-year-old stage 53-year-old stage 52-year-old stage 54-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 44-year-old stage 29-year-old stage 38-year-old stage 55-year-old stage 50-year-old stage 28-year-old stage 51-year-old stage 57-year-old stage 49-year-old stage 24-year-old stage 23-year-old stage 35-year-old stage 58-year-old stage 25-year-old stage 32-year-old stage 33-year-old stage 45-year-old stage 41-year-old stage 46-year-old stage 60-year-old stage 18-year-old stage 31-year-old stage 36-year-old stage 22-year-old stage 19-year-old stage 20-year-old stage 47-year-old stage 27-year-old stage 40-year-old stage

Normal

Female Male

10x 5' v2

Cell

Mus musculus

Glutamatergic neuron

Secondary somatosensory cortex Lateral septal complex Piriform cortex Hippocampal field Pallidum Orbitofrontal cortex Olfactory cortex Cerebral cortex Nucleus accumbens Primary somatosensory cortex Anterior olfactory nucleus Primary auditory cortex Primary motor cortex Caudate-putamen Dentate gyrus of hippocampal formation Anterior cerebral artery

Prime adult stage

Normal

Male

Scatac-seq

Nucleus

Mus musculus

Erythrocyte Oligodendrocyte precursor cell Endothelial cell Hypendymal cell Oligodendrocyte Tanycyte Ependymal cell Microglial cell Mural cell Pituitary gland cell Neuron Astrocyte Fibroblast

Hypothalamus

9-week-old stage Juvenile stage 4-week-old stage 23-day-old stage 2-week-old stage 1-week-old stage 6-week-old stage 26-day-old stage 2-month-old stage 8-week-old stage

Normal

Female Male

10x 3' v1 10x 3' v3 Drop-seq 10x 3' v2

Nucleus Cell

Mus musculus

T cell Cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Inhibitory interneuron Macrophage Microglial cell Pericyte Neuron Astrocyte Medium spiny neuron

Striatum Cortical layer v Cortical layer vi Olfactory region Cortical layer ii/iii Corpus callosum Brain ventricle Pia mater

4-week-old stage 24-week-old stage 20-month-old stage and over

Normal

Female

Merfish

Mus musculus

T cell Cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Inhibitory interneuron Macrophage Microglial cell Pericyte Neuron Astrocyte Medium spiny neuron

Striatum Cortical layer v Cortical layer vi Olfactory region Cortical layer ii/iii Corpus callosum Brain ventricle Pia mater

4-week-old stage 24-week-old stage 20-month-old stage and over

Normal

Female

Merfish

Homo sapiens

Glioblast Oligodendrocyte Neuroblast (sensu nematoda and protostomia) Neuroblast (sensu vertebrata) Radial glial cell Neuron

Choroid plexus epithelium Striatum Telencephalon Cortex Lower layers of the cortex Frontal cortex Entorhinal cortex Upper layers of the cortex Caudate-putamen Hippocampal formation Occipital cortex Forebrain

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage 10th week post-fertilization stage 11th week post-fertilization stage

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Off midget ganglion cell Retinal ganglion cell Off parasol ganglion cell On midget ganglion cell On parasol ganglion cell

Peripheral region of retina Macula lutea proper Fovea centralis Macula lutea

66-year-old stage 69-year-old stage 75-year-old stage 21-year-old stage 34-year-old stage 65-year-old stage 43-year-old stage 71-year-old stage 85-year-old stage 53-year-old stage 88-year-old stage 52-year-old stage 68-year-old stage 30-year-old stage 17-year-old stage 84-year-old stage 15-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 72-year-old stage 81-year-old stage 74-year-old stage 80 year-old and over stage 24-year-old stage 16-year-old stage 58-year-old stage 25-year-old stage 67-year-old stage Late adult stage 90 year-old and over stage 3-year-old stage 32-year-old stage 77-year-old stage 64-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 18-year-old stage 60-79 year-old stage 63-year-old stage Eighth decade stage 47-year-old stage 76-year-old stage 73-year-old stage 83-year-old stage Prime adult stage 11-year-old stage 27-year-old stage 10-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Kidney cell T cell Hepatocyte Endothelial cell Cortical cell of adrenal gland Schwann cell Macrophage Neuroblast (sensu vertebrata) B cell Fibroblast Dendritic cell

Neck Liver Abdomen Chest Adrenal gland Lymph node Cervical lymph node

13-year-old stage 2-year-old stage 12-year-old stage 15-month-old stage 6-month-old stage 21-month-old stage 20-month-old stage 3-year-old stage 16-month-old stage 18-month-old stage 5-year-old stage 12-month-old stage 7-year-old stage 4-year-old stage

Neuroblastoma

Female Male

10x 3' v3

Nucleus

Macaca mulatta

Gabaergic neuron

Dorsolateral prefrontal cortex Brodmann (1909) area 19 Medial dorsal nucleus of thalamus Primary visual cortex Ventral lateral nucleus of thalamus Inferior temporal gyrus Medulla oblongata Prefrontal cortex Midbrain Entorhinal cortex Nucleus accumbens Cerebrocerebellum Primary somatosensory cortex Primary auditory cortex Primary motor cortex Inferior parietal cortex Head of caudate nucleus Corpus callosum Hippocampal formation Perirhinal cortex Pons Cerebellar vermis Anterior cingulate cortex Superior temporal sulcus Superior parietal cortex Lateral geniculate body Amygdala

Juvenile stage Prime adult stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Macaca mulatta

Cerebellar neuron

Dorsolateral prefrontal cortex Brodmann (1909) area 19 Medial dorsal nucleus of thalamus Primary visual cortex Ventral lateral nucleus of thalamus Inferior temporal gyrus Medulla oblongata Prefrontal cortex Midbrain Entorhinal cortex Nucleus accumbens Cerebrocerebellum Primary somatosensory cortex Primary auditory cortex Primary motor cortex Inferior parietal cortex Head of caudate nucleus Corpus callosum Hippocampal formation Perirhinal cortex Pons Cerebellar vermis Anterior cingulate cortex Superior temporal sulcus Superior parietal cortex Lateral geniculate body Amygdala

Juvenile stage Prime adult stage

Normal

Female Male

Sci-rna-seq3

Nucleus