Mus musculus

Kupffer cell Osteoclast Myeloid suppressor cell Granulocyte Hematopoietic stem cell Plasmacytoid dendritic cell Adipose macrophage Central nervous system macrophage Conventional dendritic cell Monocyte Microglial cell

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 13 Theiler stage 24 Theiler stage 15 Theiler stage 14 Theiler stage 12 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 25 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Callithrix jacchus

Oligodendrocyte

Primary motor cortex Anterior hypothalamic region Primary visual cortex Nucleus accumbens Dorsolateral prefrontal cortex Primary somatosensory cortex Lateral nuclear group of thalamus Medial dorsal nucleus of thalamus Putamen Lateral geniculate body Brodmann (1909) area 25 Posterior hypothalamic region Ventral lateral nucleus of thalamus Amygdala Temporal cortex Basal forebrain Temporal lobe Ventral thalamus Secondary visual cortex Dorsal thalamus Brainstem Primary auditory cortex Medial amygdaloid nucleus Hippocampal formation Brodmann (1909) area 23 Lateral amygdaloid nucleus Prefrontal cortex Parietal cortex Central amygdaloid nucleus Caudate nucleus Thalamic complex Cerebellum lobule

Prime adult stage Late adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fibroblast Periportal region hepatocyte Mucosal invariant t cell Inflammatory macrophage Cd16-positive, cd56-dim natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Dendritic cell, human Cholangiocyte Endothelial cell of periportal hepatic sinusoid Neutrophil Plasma cell B cell Midzonal region hepatocyte Centrilobular region hepatocyte Non-classical monocyte Plasmacytoid dendritic cell Leukocyte Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd16-negative, cd56-bright natural killer cell, human Natural killer cell Macrophage Hepatic stellate cell Conventional dendritic cell Endothelial cell of pericentral hepatic sinusoid Classical monocyte Cd4-positive, alpha-beta t cell

Liver Caudate lobe of liver

Adult stage 73-year-old stage 26-year-old stage 72-year-old stage 53-year-old stage 21-year-old stage 49-year-old stage 52-year-old stage 70-year-old stage 45-year-old stage 41-year-old stage 55-year-old stage 58-year-old stage 75-year-old stage 64-year-old stage 68-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 28-year-old stage Young adult stage Prime adult stage 46-year-old stage 67-year-old stage 65-year-old stage 44-year-old stage 34-year-old stage

Normal

Female Male

Cel-seq2 10x 3' v3 10x 3' v2

Cell Nucleus

Mus musculus

Astrocyte Leptomeningeal cell Oligodendrocyte precursor cell Oligodendrocyte Pericyte Neural stem cell Microglial cell Endothelial cell

Primary motor cortex Dentate gyrus of hippocampal formation Nucleus accumbens Primary somatosensory cortex Lateral septal complex Cerebral cortex Piriform cortex Anterior olfactory nucleus Pallidum Anterior cerebral artery Primary auditory cortex Olfactory cortex Secondary somatosensory cortex Caudate-putamen Hippocampal field Orbitofrontal cortex

Prime adult stage

Normal

Male

Scatac-seq

Nucleus

Homo sapiens

Fibroblast Mast cell Smooth muscle cell Neutrophil Plasma cell Dendritic cell B cell Natural killer cell Macrophage Monocyte T cell Endothelial cell

Femoral artery Carotid artery segment Coronary artery

54-year-old stage 62-year-old stage 78-year-old stage 74-year-old stage 83-year-old stage 81-year-old stage 82-year-old stage 59-year-old stage 58-year-old stage 75-year-old stage 79-year-old stage 89-year-old stage 64-year-old stage 66-year-old stage 77-year-old stage 76-year-old stage 87-year-old stage 80-year-old stage 46-year-old stage 67-year-old stage 65-year-old stage 71-year-old stage

Atherosclerosis

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Fibroblast Neuroblast (sensu vertebrata) Neuroblast (sensu nematoda and protostomia) Cell Glioblast Oligodendrocyte Neuroplacodal cell Macrophage Erythrocyte Radial glial cell Neuron Neural crest cell

Midbrain Midbrain tectum Cerebellar peduncular complex

Carnegie stage 20 10th week post-fertilization stage Carnegie stage 15 15th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Fibroblast Double negative thymocyte Cortical thymic epithelial cell Mast cell Alpha-beta t cell Cd4-positive, alpha-beta memory t cell Memory b cell Plasma cell Dendritic cell Gamma-delta t cell Regulatory t cell Megakaryocyte Vascular associated smooth muscle cell Medullary thymic epithelial cell Precursor b cell Plasmacytoid dendritic cell Epithelial cell of thymus Lymphocyte Progenitor cell Cd8-positive, alpha-beta t cell Early t lineage precursor Natural killer cell Macrophage Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Erythrocyte Group 3 innate lymphoid cell Monocyte Cd8-positive, alpha-beta memory t cell Cd4-positive, alpha-beta t cell T cell Naive b cell Endothelial cell Double-positive, alpha-beta thymocyte

Thymus

Third decade stage 10th week post-fertilization stage Juvenile stage (5-14 yo) 16th week post-fertilization stage Fourth decade stage 3-month-old stage 2-year-old stage 10-month-old stage 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 15-month-old stage Organogenesis stage 9th week post-fertilization stage 6-month-old stage 17th week post-fertilization stage

Normal

Female Male

10x 3' v3 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Epithelial cell Conjunctival epithelial cell

Tunica fibrosa of eyeball Cornea Sclera Ocular surface region Corneal epithelium Corneo-scleral junction Substantia propria of cornea

39-year-old stage 62-year-old stage 27-year-old stage 74-year-old stage 72-year-old stage 53-year-old stage 83-year-old stage Postnatal stage 61-year-old stage 13-year-old stage Newborn stage (0-28 days) 1-year-old stage 86-year-old stage 48-year-old stage 70-year-old stage 45-year-old stage 41-year-old stage Eighth decade stage 10-year-old stage 55-year-old stage 2-year-old stage 75-year-old stage 90 year-old and over stage 22-year-old stage 51-year-old stage 64-year-old stage 77-year-old stage 11-year-old stage 33-year-old stage 69-year-old stage 32-year-old stage 87-year-old stage 84-year-old stage 25-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 34-year-old stage 16-year-old stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Iga plasma cell Plasmablast Germinal center b cell Igg plasma cell Pro-b cell Memory b cell Precursor b cell Igm plasma cell Naive b cell

Epithelium of rectum Ileum lamina propria Ileal epithelium Epithelium of esophagus Stomach Ascending colon Sigmoid colon Transverse colon Pyloric antrum Caecum Colonic epithelium Colonic mucosa Mesenteric lymph node Ileum Vermiform appendix Descending colon Rectosigmoid junction Small intestine Duodenal epithelium Periodontium Body of stomach Intestine Buccal mucosa Esophagus Jejunum Epithelium of stomach Rectum Labial gland Duodenum Pylorus Gingiva Epithelium of small intestine Parotid gland Lamina propria of mucosa of colon Colon

54-year-old stage 35-year-old stage Adult stage 39-year-old stage 62-year-old stage 74-year-old stage 26-year-old stage 72-year-old stage 9-year-old stage Third decade stage 10th week post-fertilization stage 21-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage Juvenile stage (5-14 yo) 13-year-old stage Sixth decade stage Newborn stage (0-28 days) 4-year-old stage 16th week post-fertilization stage Fourth decade stage 52-year-old stage 86-year-old stage 48-year-old stage 19th week post-fertilization stage 70-year-old stage 6-year-old stage 12-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 10-year-old stage 2-month-old stage 55-year-old stage 23-year-old stage 58-year-old stage 14-year-old stage 2-year-old stage 75-year-old stage 50-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 15th week post-fertilization stage 77-year-old stage 11-year-old stage 11th week post-fertilization stage 13th week post-fertilization stage 33-year-old stage 69-year-old stage 32-year-old stage 12th week post-fertilization stage 28-year-old stage 76-year-old stage Young adult stage 5-year-old stage Fifth decade stage 31-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage Prime adult stage 18th week post-fertilization stage 84-year-old stage 56-year-old stage 37-year-old stage Pediatric stage 9th week post-fertilization stage 46-year-old stage 24-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 17th week post-fertilization stage Seventh decade stage 44-year-old stage 34-year-old stage

Crohn disease Inflammatory bowel disease Colorectal cancer Gastric cancer Normal Ulcerative colitis

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v1 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Mus musculus

Neural progenitor cell Gabaergic neuron Glioblast Oligodendrocyte precursor cell Blood vessel endothelial cell Hypendymal cell Ependymal cell Glutamatergic neuron Erythrocyte Vascular leptomeningeal cell Microglial cell Neuron

Diencephalon

Theiler stage 26 Theiler stage 24 Theiler stage 20 Theiler stage 22

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Plasmablast Double negative thymocyte Mucosal invariant t cell Memory t cell Cd4-positive, alpha-beta memory t cell Memory b cell Gamma-delta t cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Cd8-positive, alpha-beta memory t cell T cell Naive b cell Double-positive, alpha-beta thymocyte

Blood

54-year-old stage 35-year-old stage 78-year-old stage 73-year-old stage 74-year-old stage 53-year-old stage 61-year-old stage 57-year-old stage 49-year-old stage 52-year-old stage 70-year-old stage 40-year-old stage 45-year-old stage 59-year-old stage 30-year-old stage 55-year-old stage 58-year-old stage 50-year-old stage 51-year-old stage 79-year-old stage 66-year-old stage 77-year-old stage 32-year-old stage 76-year-old stage 63-year-old stage 60-year-old stage 84-year-old stage 37-year-old stage 24-year-old stage 67-year-old stage 71-year-old stage 47-year-old stage

Covid-19 Normal

Female Male

10x 5' v1

Cell

Homo sapiens

Fibroblast Schwann cell Endothelial cell of vascular tree Odontoblast Myeloid cell Mural cell Melanocyte Epithelial cell Lymphocyte Muscle cell

Soft palate Hard palate Sublingual gland Periodontium Buccal mucosa Mucosa of dorsum of tongue Gingiva Mucosa of lip Parotid gland Submandibular gland Minor salivary gland Dental pulp

35-year-old stage 39-year-old stage 62-year-old stage 26-year-old stage 53-year-old stage 21-year-old stage 61-year-old stage 57-year-old stage Sixth decade stage Fourth decade stage 48-year-old stage 40-year-old stage 59-year-old stage 30-year-old stage 22-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 33-year-old stage 69-year-old stage 32-year-old stage 28-year-old stage Young adult stage 31-year-old stage 56-year-old stage 24-year-old stage 20-year-old stage 65-year-old stage Seventh decade stage 34-year-old stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell