Drosophila melanogaster

Ovarian sheath cell Tormogen cell Outer photoreceptor cell Optic-lobe-associated cortex glial cell Mechanosensory neuron of leg chordotonal organ Muscle cell Transmedullary y neuron tmy8 T2 neuron Visual pigment cell (sensu nematoda and protostomia) Adult abdominal pericardial cell Cyst cell of testis Dorsal margin photoreceptor cell Follicle cell of egg chamber Crystal cell Transmedullary y neuron tmy4 Nociceptive neuron Gamma kenyon cell Indirect flight muscle cell Visceral muscle cell Transmedullary neuron tm3 Subperineurial glial cell Transmedullary neuron tm1 Proximal medullary amacrine neuron pm2 Adult olfactory receptor neuron or88a Cardial cell Somatic muscle cell Adult malpighian tubule principal cell of initial segment Alpha'/beta' kenyon cell Photoreceptor cell r7 Adult malpighian tubule principal cell Interfollicle cell Adult olfactory receptor neuron or67d Lamina wide-field 2 neuron Adult olfactory receptor neuron or47b Lobula columnar neuron lc10 Distal medullary amacrine neuron dm10 T3 neuron Adult optic chiasma glial cell Eo sensory organ accessory cell Polar follicle cell Midgut large flat cell Adult renal stem cell Cyst progenitor cell Centrifugal neuron c2 Lamina monopolar neuron l4 Leg taste bristle chemosensory neuron Photoreceptor cell r8 Gustatory receptor neuron Adult enteroendocrine cell Dorsal appendage forming follicle cell Ocellar retinula cell Hemocyte (sensu arthropoda) Enteroendocrine cell Maxillary palp olfactory receptor neuron Compound eye cone cell Proximal medullary amacrine neuron pm4 Posterior terminal follicle cell Adult enterocyte Antennal lobe projection neuron Eye photoreceptor cell Epithelial cell Spermatocyte cyst cell Stretch follicle cell Adult midgut enterocyte Dopaminergic neuron Copper cell Chordotonal neuron Johnston organ neuron Adult cholinergic neuron Lobula columnar neuron lc12 Ensheathing glial cell Germline cell Enterocyte of anterior adult midgut epithelium Transmedullary neuron tm2 Adult malpighian tubule principal cell of lower segment Transmedullary neuron tm9 Leg muscle motor neuron Transmedullary neuron tm20 Transmedullary neuron tm5c Lamina monopolar neuron l2 Antennal olfactory receptor neuron of coeloconic sensillum Distal medullary amacrine neuron dm8a Multidendritic neuron Escort cell Neuron of aristal sensillum Adult tracheocyte Intestinal stem cell Distal medullary amacrine neuron dm9 Lamina wide-field 1 neuron Adult malpighian tubule principal cell of lower ureter Distal medullary amacrine neuron dm12 Sensory neuron Adult glial cell Medulla intrinsic neuron mi4 Adult neuron Early elongation stage spermatid Cns surface glial cell Lamina monopolar neuron l3 Perineurial glial cell Mechanosensory neuron Auditory sensory neuron Distal medullary amacrine neuron dm11 Head cyst cell Columnar neuron t1 Spermatid Adult olfactory receptor neuron gr21a/63a Transmedullary y neuron tmy14 Kenyon cell Mid-late elongation-stage spermatid Main body follicle cell Adult brain perineurial glial cell Enterocyte of posterior adult midgut epithelium Centrifugal neuron c3 Olfactory receptor neuron Adult oenocyte Adult astrocyte-like glial cell T2a neuron Male accessory gland secondary cell Distal medullary amacrine neuron dm3 Adult olfactory receptor neuron ir75d Medulla intrinsic neuron mi15 Fat body cell Spermatocyte Labral sense organ mechanosensory neuron Transmedullary y neuron tmy5a Adult malpighian tubule bar-shaped cell of initial segment Tendon cell Transmedullary neuron tm29 Gustatory receptor neuron of the labellum Neuron Enteroblast Adult dopaminergic pam neuron Medulla intrinsic neuron mi1 Medulla intrinsic neuron mi9 Male accessory gland main cell Early-mid elongation-stage spermatid Transmedullary neuron tm4 Adult brain cell body glial cell Adult olfactory receptor neuron or92a Lamina monopolar neuron l5 Cell body glial cell Spermatogonium Adult antennal olfactory receptor neuron Adult differentiating enterocyte Lamina monopolar neuron l1 Adult olfactory receptor neuron or65 Adult malpighian tubule stellate cell of main segment Lobula columnar neuron lc17 Adult olfactory receptor neuron or13a Antennal olfactory receptor neuron of basiconic sensillum

Haltere Imaginal disc-derived wing Testis Insect leg Panarthropod head Insect proboscis Open tracheal system trachea Ovary Arthropod fat body Dorsal vessel heart Digestive tract Insect adult thorax Malpighian tubule Antenna Body wall Male reproductive gland Post-embryonic organism

Day 3 of adulthood Day 5 of adulthood Day 2 of adulthood Day 1 of adulthood

Normal

Mixed sex Male Female

10x genomics v3

Mus musculus

Endothelial cell of hepatic sinusoid Endocardial cell Endothelial cell of lymphatic vessel Glomerular endothelial cell Endothelial cell Microvascular endothelial cell Endothelial cell of artery Brain pericyte Embryonic blood vessel endothelial progenitor cell Vein endothelial cell Pericyte Cerebral cortex endothelial cell

Embryo

Theiler stage 22 Theiler stage 27 Theiler stage 24 Theiler stage 18 Theiler stage 25 Theiler stage 14 Theiler stage 16 Theiler stage 17 Theiler stage 15 Theiler stage 19 Theiler stage 26 Theiler stage 13 Theiler stage 20 Theiler stage 12 Theiler stage 21 Theiler stage 23

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Cardiac muscle cell

Heart right ventricle Apex of heart Heart left ventricle Interventricular septum

Pediatric stage Sixth decade stage Fifth decade stage Third decade stage Seventh decade stage Postnatal stage Fourth decade stage Eighth decade stage

Arrhythmogenic right ventricular cardiomyopathy Dilated cardiomyopathy Normal Non-compaction cardiomyopathy

Female Male

10x 3' v3 10x 3' v2

Nucleus

Mus musculus

Myotube Muscle precursor cell Myoblast Myofibroblast cell

Embryo

Theiler stage 22 Theiler stage 27 Theiler stage 24 Theiler stage 18 Theiler stage 25 Theiler stage 14 Theiler stage 16 Theiler stage 17 Theiler stage 15 Theiler stage 19 Theiler stage 26 Theiler stage 13 Theiler stage 20 Theiler stage 12 Theiler stage 21 Theiler stage 23

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

T cell Neutrophil Podocyte Parietal epithelial cell Kidney interstitial alternatively activated macrophage Renal interstitial pericyte Endothelial cell Kidney loop of henle thin descending limb epithelial cell Mature nk t cell Kidney interstitial fibroblast Mast cell Kidney collecting duct intercalated cell Epithelial cell of proximal tubule Plasmacytoid dendritic cell, human Neural cell Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney connecting tubule epithelial cell Kidney loop of henle thick ascending limb epithelial cell Plasma cell B cell Kidney loop of henle thin ascending limb epithelial cell Papillary tips cell Conventional dendritic cell Non-classical monocyte Mononuclear phagocyte

Renal medulla Renal papilla Kidney Cortex of kidney

66-year-old stage 69-year-old stage Sixth decade stage 54-year-old stage 29-year-old stage Fifth decade stage 57-year-old stage Third decade stage 14-year-old stage Seventh decade stage 59-year-old stage 45-year-old stage Fourth decade stage 63-year-old stage Eighth decade stage 76-year-old stage

Chronic kidney disease Normal Acute kidney failure

Female Male

10x 3' v3

Nucleus

Homo sapiens

T cell Neutrophil Podocyte Parietal epithelial cell Kidney interstitial alternatively activated macrophage Renal interstitial pericyte Endothelial cell Kidney loop of henle thin descending limb epithelial cell Kidney interstitial fibroblast Mast cell Kidney collecting duct intercalated cell Epithelial cell of proximal tubule Plasmacytoid dendritic cell, human Neural cell Lymphocyte Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney connecting tubule epithelial cell Kidney loop of henle thick ascending limb epithelial cell Plasma cell B cell Kidney loop of henle thin ascending limb epithelial cell Papillary tips cell Conventional dendritic cell Non-classical monocyte Mononuclear phagocyte

Renal medulla Renal papilla Kidney Cortex of kidney

66-year-old stage 69-year-old stage 42-year-old stage 43-year-old stage Sixth decade stage 53-year-old stage 52-year-old stage 54-year-old stage 48-year-old stage 30-year-old stage 39-year-old stage 29-year-old stage 56-year-old stage Fifth decade stage 57-year-old stage Third decade stage 49-year-old stage 14-year-old stage 35-year-old stage Seventh decade stage 59-year-old stage 64-year-old stage 45-year-old stage 41-year-old stage 70-year-old stage 31-year-old stage 36-year-old stage Fourth decade stage 63-year-old stage Eighth decade stage 47-year-old stage 76-year-old stage 40-year-old stage

Chronic kidney disease Normal Acute kidney failure

Female Male

10x 3' v3

Nucleus Cell

Mus musculus

Cell Endothelial cell Pancreatic acinar cell Pancreatic pp cell Schwann cell Pancreatic endocrine cell Pancreatic a cell Pancreatic d cell Pancreatic stellate cell Type b pancreatic cell Pancreatic ductal cell Hematopoietic cell

Islet of langerhans Pancreas

6-month-old stage 5-week-old stage Theiler stage 22 4-month-old stage 3-month-old stage 20-month-old stage and over 2-week-old stage Theiler stage 20 2-month-old stage Theiler stage 21 Theiler stage 23 8-week-old stage

Type 1 diabetes mellitus Endocrine pancreas disorder Normal Type 2 diabetes mellitus

Female Male

10x 3' v3 10x 3' v2

Cell

Danio rerio

Peridermal cell Ionocyte Epidermal cell Epidermal mucus secreting cell

Cloaca Ectoderm-derived structure Multicellular anatomical structure Skin epidermis Periderm Integument Taste bud Head

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Intestine goblet cell Natural killer cell Erythrocyte Gamma-delta t cell Type g enteroendocrine cell Mast cell Iga plasma cell Cd4-positive helper t cell Stem cell Natural t-regulatory cell Endothelial cell of artery Capillary endothelial cell Peptic cell Igg plasma cell P/d1 enteroendocrine cell Enteroendocrine cell Glandular cell of esophagus Macrophage Memory b cell Activated cd8-positive, alpha-beta t cell Parietal cell Enterocyte Vein endothelial cell Mucous neck cell of gastric gland Foveolar cell of stomach Monocyte Fibroblast Dendritic cell Memory t cell Epithelial cell of esophagus

Duodenum Ileal epithelium Epithelium of rectum Submucosal esophageal gland Body of stomach Cardia of stomach Ascending colon epithelium Esophagogastric junction Lower esophagus

66-year-old stage 69-year-old stage 34-year-old stage 65-year-old stage 42-year-old stage 43-year-old stage 71-year-old stage 53-year-old stage 88-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 29-year-old stage 56-year-old stage 55-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 51-year-old stage 57-year-old stage 74-year-old stage 80 year-old and over stage 58-year-old stage 67-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 86-year-old stage 41-year-old stage 70-year-old stage 60-year-old stage 36-year-old stage 63-year-old stage 73-year-old stage 83-year-old stage 27-year-old stage

Gastric cancer Barrett esophagus Normal Gastric intestinal metaplasia Gastritis

Female Male

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cultured cell

Mcf-7

Normal

Sci-plex

Nucleus

Sus scrofa Homo sapiens Macaca mulatta

T cell Pyramidal neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Endothelial cell of artery Leukocyte Dentate gyrus neuron Neural cell Brain vascular cell Hippocampal granule cell Macrophage Microglial cell Granule cell Neuroblast (sensu vertebrata) Myeloid cell Pericyte Neuron Vascular associated smooth muscle cell Astrocyte Hippocampal astrocyte

Subiculum Hippocampal field Entorhinal cortex Ca1 field of hippocampus Ammon's horn Dentate gyrus of hippocampal formation

48-year-old stage 44-year-old stage 50-year-old stage 51-year-old stage 79-year-old stage

Normal

Female Male

10x genomics v3

Homo sapiens

Neuron Sst chodl gabaergic interneuron

Subthalamic nucleus Medial geniculate body Brodmann (1909) area 25 Lateral amygdaloid nucleus Anterior nuclear group Corticomedial nuclear complex Pontine reticular formation Temporal fusiform gyrus Brodmann (1909) area 19 Centromedian nucleus of thalamus Intralaminar nuclear group Medial dorsal nucleus of thalamus Parabrachial nucleus Primary visual cortex Claustrum of brain Inferior temporal gyrus Rostral ca3 Nucleus of medulla oblongata Red nucleus Subicular complex Pontine tegmentum Pontine nuclear group Globus pallidus Midbrain nucleus Piriform cortex Hippocampal field Lateral nuclear group of thalamus Brodmann (1909) area 13 Middle temporal gyrus Central amygdaloid nucleus Ventral anterior nucleus of thalamus Septal nuclear complex Cerebellar nuclear complex Median tuberal portion Extrastriate cortex Epithalamus Dorsal tegmental nucleus Brodmann (1909) area 38 Lateral entorhinal cortex Supraoptic nucleus Brodmann (1909) area 32 Medial entorhinal cortex Midbrain tectum Inferior olivary complex Brodmann (1909) area 40 Inferior frontal gyrus Substantia nigra Agranular insular cortex Brodmann (1909) area 43 Nucleus accumbens Cerebrocerebellum Gray matter of midbrain Substantia innominata Anterior cortical amygdaloid nucleus Primary somatosensory cortex Brodmann (1909) area 14 Anterior olfactory nucleus Accessory basal amygdaloid nucleus Pulvinar nucleus Primary auditory cortex Hypothalamus Brodmann (1909) area 23 Primary motor cortex Brodmann (1909) area 24 Brodmann (1909) area 46 Medial zone of hypothalamus Posterior parahippocampal gyrus Basolateral amygdaloid nuclear complex Perirhinal cortex Granular insular cortex Cerebellar vermis Spinal cord Retrosplenial region Cuneus cortex Dentate gyrus of hippocampal formation Lateral posterior nucleus of thalamus Mammillary body Superior temporal gyrus Body of caudate nucleus Uncal ca1 Bed nucleus of stria terminalis Superior parietal cortex Lateral geniculate body Putamen Pretectal region Nucleus of dorsal thalamus Preoptic area

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus