Homo sapiens

Medial ganglionic eminence derived interneuron

Brodmann (1909) area 13 Brodmann (1909) area 14 Brodmann (1909) area 19 Brodmann (1909) area 23 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 32 Brodmann (1909) area 38 Brodmann (1909) area 40 Brodmann (1909) area 43 Brodmann (1909) area 46 Accessory basal amygdaloid nucleus Agranular insular cortex Anterior cortical amygdaloid nucleus Anterior nuclear group Anterior olfactory nucleus Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Centromedian nucleus of thalamus Cerebellar nuclear complex Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Epithalamus Extrastriate cortex Globus pallidus Granular insular cortex Gray matter of midbrain Hippocampal field Hypothalamus Inferior frontal gyrus Inferior olivary complex Inferior temporal gyrus Intralaminar nuclear group Lateral amygdaloid nucleus Lateral entorhinal cortex Lateral geniculate body Lateral nuclear group of thalamus Lateral posterior nucleus of thalamus Mammillary body Medial dorsal nucleus of thalamus Medial entorhinal cortex Medial geniculate body Medial zone of hypothalamus Median tuberal portion Midbrain tectum Middle temporal gyrus Nucleus accumbens Nucleus of dorsal thalamus Nucleus of medulla oblongata Parabrachial nucleus Perirhinal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Preoptic area Pretectal region Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Red nucleus Retrosplenial region Rostral ca3 Septal nuclear complex Subicular complex Substantia innominata Substantia nigra Subthalamic nucleus Superior parietal cortex Superior temporal gyrus Supraoptic nucleus Temporal fusiform gyrus Uncal ca1 Ventral anterior nucleus of thalamus

50-year-old stage 29-year-old stage 42-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Intestine goblet cell Paneth cell Enteroendocrine cell Tuft cell of small intestine Foveolar cell of stomach Intestinal crypt stem cell Mucous neck cell of gastric gland Enterocyte Best4+ enterocyte Transit amplifying cell M cell of gut

Duodenal epithelium Duodenum Epithelium of small intestine Ileal epithelium Ileum Ileum lamina propria Jejunum Lamina propria of small intestine Mesenteric lymph node Small intestine

6-year-old stage 50-year-old stage 52-year-old stage Fifth decade stage 14-year-old stage 37-year-old stage 29-year-old stage 22-year-old stage 31-year-old stage 25-year-old stage 9-year-old stage 12-year-old stage 11-year-old stage Eighth decade stage Fourth decade stage 56-year-old stage Seventh decade stage 20-year-old stage 36-year-old stage 45-year-old stage 67-year-old stage 4-year-old stage 13-year-old stage 87-year-old stage 60-year-old stage Sixth decade stage 10-year-old stage 18-year-old stage Prime adult stage Third decade stage

Normal Celiac disease Crohn disease

Female Male

10x 3' v2 10x 3' v3 10x 5' transcription profiling 10x 5' v2 10x 3' v1 10x 5' v1

Cell

Homo sapiens

Endocardial cell Schwann cell Fibroblast Pericyte Cardiac blood vessel endothelial cell Macrophage Mesothelial cell Adipocyte Lymphocyte Neuron Cardiac muscle cell Smooth muscle cell

Right atrium auricular region

Fifth decade stage Ninth decade stage Eighth decade stage Seventh decade stage Sixth decade stage

Normal Heart valve disorder Heart failure Myocardial ischemia

Female Male

10x 3' v3

Nucleus

Homo sapiens

Pulmonary alveolar type 1 cell Club cell Ciliated cell Pulmonary alveolar type 2 cell Stem cell Goblet cell Neuroendocrine cell Basal cell Lung secretory cell

Alveolar sac Bronchus Lung Lung epithelium Nasopharynx

Normal

10x 3' v2 10x 3' v3 10x 5' v1

Cell

Homo sapiens

T cell

Abdomen Abdominal wall Adnexa of uterus Ascitic fluid Caecum Diaphragm Fallopian tube Intestine Large intestine Left ovary Liver Lymph node Omentum Paracolic gutter Parietal peritoneum Peritoneum Right ovary Transverse colon Urinary bladder

80 year-old and over stage 64-year-old stage 50-year-old stage 68-year-old stage 41-year-old stage 63-year-old stage 58-year-old stage 75-year-old stage 59-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 46-year-old stage 56-year-old stage 55-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 45-year-old stage 70-year-old stage 76-year-old stage 69-year-old stage 60-year-old stage 71-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Homo sapiens

Megakaryocyte Neutrophil Granulocyte monocyte progenitor cell Mast cell Fibroblast Promonocyte Monocyte Common myeloid progenitor Megakaryocyte-erythroid progenitor cell Macrophage Dendritic cell Hematopoietic multipotent progenitor cell Common dendritic progenitor Granulocyte Promyelocyte Osteoclast Langerhans cell Kupffer cell Plasmacytoid dendritic cell Early lymphoid progenitor Myelocyte Pre-conventional dendritic cell Hematopoietic stem cell

Bone marrow Gut wall Kidney Liver Mesenteric lymph node Skin of body Spleen Thymus Yolk sac

15th week post-fertilization stage 11th week post-fertilization stage 14th week post-fertilization stage 9th week post-fertilization stage 13th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 19 Carnegie stage 20 Carnegie stage 13

Normal

Female Male

10x 3' v2 10x 5' v1

Cell

Homo sapiens

Regulatory t cell Cd8-positive, alpha-beta memory t cell, cd45ro-positive Alpha-beta t cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Naive thymus-derived cd4-positive, alpha-beta t cell Gamma-delta t cell Cd8-positive, alpha-beta memory t cell Cd16-negative, cd56-bright natural killer cell, human Cd4-positive helper t cell Lymphocyte Effector memory cd4-positive, alpha-beta t cell Mucosal invariant t cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd16-positive, cd56-dim natural killer cell, human T follicular helper cell

Blood Bone marrow Caecum Duodenum Ileum Jejunal epithelium Jejunum lamina propria Liver Lung Mesenteric lymph node Omentum Sigmoid colon Skeletal muscle tissue Spleen Thoracic lymph node Thymus Transverse colon

Eighth decade stage 56-year-old stage Seventh decade stage 67-year-old stage Sixth decade stage

Normal

Female Male

10x 3' v3 10x 5' v2 10x 5' v1

Cell

Homo sapiens

Natural killer cell Neutrophil Mast cell Fibroblast Monocyte Malignant cell Hematopoietic multipotent progenitor cell T cell Myeloid cell Erythroid lineage cell Plasma cell Megakaryocyte progenitor cell Plasmacytoid dendritic cell Myeloid dendritic cell B cell

Bone marrow

Pediatric stage

T-cell childhood acute lymphocytic leukemia

Female Male

10x 5' v2

Cell

Mus musculus

Oligodendrocyte Neuroblast (sensu vertebrata) Dopaminergic neuron Tanycyte Monocyte Pericyte Vascular leptomeningeal cell Macrophage Dendritic cell Ependymal cell Lymphocyte Oligodendrocyte precursor cell Microglial cell Endothelial cell Gabaergic neuron Smooth muscle cell Glycinergic neuron Bergmann glial cell Glutamatergic neuron Choroid plexus epithelial cell Astrocyte

Brain Cerebellum Cortical subplate Hindbrain Hippocampal formation Neocortex Pallidum Striatum Thalamic complex Ventricular system of brain White matter

9-week-old stage

Normal

Male

Merfish

Mus musculus

Oligodendrocyte Neuroblast (sensu vertebrata) Dopaminergic neuron Tanycyte Monocyte Pericyte Vascular leptomeningeal cell Macrophage Dendritic cell Ependymal cell Lymphocyte Oligodendrocyte precursor cell Microglial cell Endothelial cell Gabaergic neuron Smooth muscle cell Glycinergic neuron Bergmann glial cell Glutamatergic neuron Choroid plexus epithelial cell Astrocyte

Brain Cerebellum Cortical subplate Hindbrain Hippocampal formation Neocortex Pallidum Striatum Thalamic complex Ventricular system of brain White matter

9-week-old stage

Normal

Male

Merfish

Mus musculus

Megakaryocyte Natural killer cell Schwann cell Erythrocyte Endothelial cell of lymphatic vessel Skeletal muscle myoblast Mast cell Fibroblast Monocyte Pericyte Common myeloid progenitor Tendon cell Basophil Myoblast Peridermal cell Muscle fibroblast Macrophage Osteoblast Vein endothelial cell Onychocyte Epithelial cell Conventional dendritic cell Fibroblast of dermis Mesenchymal cell Hypertrophic chondrocyte Muscle cell Primitive red blood cell Innate lymphoid cell Hair follicle melanocyte Chondrocyte Myelocyte Smooth muscle cell Endothelial cell of artery Schwann cell precursor B cell Chondroblast Melanocyte Basal cell

Forelimb Hindlimb

Theiler stage 26 Theiler stage 16 Theiler stage 19 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 24 Theiler stage 21 Theiler stage 18

Normal

10x 3' v2 10x 3' v3

Cell

Homo sapiens

Erythrocyte Ovarian surface epithelial cell Granulosa cell Mural cell Hematopoietic cell Interstitial cell of ovary Germ cell Mesothelial cell Neural cell Epithelial cell Supporting cell Mesenchymal cell Endothelial cell Smooth muscle cell

Gonad

Carnegie stage 21 11th week post-fertilization stage 21st week post-fertilization stage 14th week post-fertilization stage Carnegie stage 18 9th week post-fertilization stage 13th week post-fertilization stage Carnegie stage 23 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage 18th week post-fertilization stage Carnegie stage 17

Normal

Female

10x 5' v2 10x 5' v1

Cell