Mus musculus

Endothelial cell of hepatic sinusoid Kidney cell T cell Neutrophil Bladder urothelial cell Endocardial cell Club cell Granulocyte Hepatocyte Stromal cell Immature t cell Natural killer cell Endothelial cell of lymphatic vessel Erythrocyte Multiciliated columnar cell of tracheobronchial tree Kidney collecting duct epithelial cell Endothelial cell Kupffer cell Neuroendocrine cell Mature nk t cell Hematopoietic precursor cell Erythroid progenitor cell, mammalian Mast cell Kidney cortex artery cell Cd8-positive, alpha-beta t cell Pulmonary neuroendocrine cell Pancreatic acinar cell Pancreatic pp cell Late pro-b cell Basal cell Stem cell of epidermis Luminal epithelial cell of mammary gland Bladder cell Schwann cell Leukocyte Classical monocyte Kidney capillary endothelial cell Smooth muscle cell Intermediate monocyte Epithelial cell of proximal tubule Epithelial cell Smooth muscle cell of the pulmonary artery Skeletal muscle satellite cell Dn3 thymocyte Plasmacytoid dendritic cell Cardiac neuron Precursor b cell Hepatic stellate cell Pancreatic a cell Myeloid dendritic cell Immature nk t cell Plasmatocyte Lymphocyte Lung macrophage Thymocyte Basal cell of epidermis Tuft cell Endothelial cell of coronary artery Macrophage Intestinal crypt stem cell Fenestrated endothelial cell Pancreatic d cell Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Regulatory t cell Macrophage dendritic cell progenitor Pancreatic stellate cell Duct epithelial cell Kidney loop of henle thick ascending limb epithelial cell Myeloid cell Bronchial smooth muscle cell Promonocyte Fibroblast of lung Keratinocyte Hematopoietic stem cell Kidney proximal straight tubule epithelial cell Alveolar macrophage Plasma cell Cd4-positive, alpha-beta t cell Vein endothelial cell Type b pancreatic cell Mesenchymal cell Mesangial cell Langerhans cell Mesenchymal stem cell of adipose tissue Granulocytopoietic cell Epidermal cell Cell of skeletal muscle Pulmonary interstitial fibroblast Keratinocyte stem cell Cardiac muscle cell B cell Pericyte Dn4 thymocyte Professional antigen presenting cell Naive t cell Mesenchymal stem cell Immature b cell Megakaryocyte-erythroid progenitor cell Smooth muscle cell of trachea Myeloid leukocyte Adventitial cell Monocyte Naive b cell Kidney loop of henle ascending limb epithelial cell Pancreatic ductal cell Large intestine goblet cell Enterocyte of epithelium of large intestine Double negative thymocyte Erythroblast Blood cell Proerythroblast Basophil Epithelial cell of large intestine Kidney proximal convoluted tubule epithelial cell Fibroblast Dendritic cell Fibroblast of cardiac tissue Pulmonary alveolar type 2 cell Non-classical monocyte Basal epithelial cell of tracheobronchial tree Chondrocyte

Skin of body Lung Thymus Trachea Liver Kidney Heart Tongue Mammary gland Pancreas Large intestine Limb muscle Spleen Bladder lumen Bone marrow Adipose tissue

4-week-old stage 3-month-old stage 20-month-old stage and over 18-month-old stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Retinal bipolar neuron Retinal cone cell Retinal rod cell Glial cell Retina horizontal cell Amacrine cell

Peripheral region of retina Macula lutea proper Fovea centralis

65-year-old stage 84-year-old stage 78-year-old stage 73-year-old stage 83-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Microcebus murinus

Endothelial cell of hepatic sinusoid Fast muscle cell T cell Osteoblast Neutrophil Granulosa cell Bladder urothelial cell Podocyte Club cell Renal principal cell Hepatocyte Stromal cell Ciliated cell Natural killer cell Endothelial cell of lymphatic vessel Erythroid progenitor cell Glutamatergic neuron Renal beta-intercalated cell Non-myelinating schwann cell Oligodendrocyte precursor cell Secretory cell Glomerular endothelial cell Slow muscle cell Reticular cell Endothelial cell Oligodendrocyte Basal cell of epithelium of trachea Kidney loop of henle thin descending limb epithelial cell Neuroendocrine cell Mature nk t cell Endothelial cell of sinusoid Hematopoietic precursor cell Interstitial cell of cajal Cd8-positive, alpha-beta t cell Epithelial cell of small intestine Pancreatic acinar cell Off-bipolar cell Platelet Pancreatic pp cell Preosteoblast Mammotroph Tendon cell Kidney collecting duct intercalated cell Erythroid lineage cell Endothelial cell of artery Capillary endothelial cell Melanocyte Enterocyte of epithelium of small intestine Smooth muscle cell Epithelial cell of proximal tubule Epithelial cell On-bipolar cell Intestinal tuft cell Plasmacytoid dendritic cell Renal intercalated cell Pancreatic endocrine cell Pancreatic a cell Vasa recta descending limb cell Renal alpha-intercalated cell Megakaryocyte progenitor cell Lymphocyte Adipocyte Small intestine goblet cell Nodal myocyte Retinal bipolar neuron Basal cell of epidermis Ependymal cell Epithelial cell of sweat gland Macrophage Pancreatic d cell Kidney distal convoluted tubule epithelial cell Innate lymphoid cell Urothelial cell Corticotroph Retinal cone cell Pulmonary alveolar type 1 cell Retinal rod cell Kidney loop of henle thick ascending limb epithelial cell Vasa recta ascending limb cell Myeloid cell Intestinal enteroendocrine cell Gonadtroph Brush cell of bronchus Leptomeningeal cell Kidney loop of henle epithelial cell Macula densa epithelial cell Spermatid Fibroblast of lung Kidney proximal straight tubule epithelial cell Alveolar macrophage Hair follicle cell Plasma cell Cd4-positive, alpha-beta t cell Vein endothelial cell Type b pancreatic cell Mesothelial cell of epicardium Retina horizontal cell Eosinophil Langerhans cell Epidermal cell Choroid plexus epithelial cell Epithelial cell of uterus Mesothelial cell Spermatocyte Cardiac muscle cell B cell Pericyte Granulocyte monocyte progenitor cell Mueller cell Skeletal muscle satellite stem cell Neuron Mesenchymal stem cell Regular atrial cardiac myocyte Monocyte Epithelial cell of exocrine pancreas Vascular associated smooth muscle cell Pancreatic ductal cell Large intestine goblet cell Enterocyte of epithelium of large intestine Kidney loop of henle thin ascending limb epithelial cell Myofibroblast cell Astrocyte Basophil Thyrotroph Spermatogonium Epithelial cell of large intestine Conventional dendritic cell Kidney proximal convoluted tubule epithelial cell Regular ventricular cardiac myocyte Fibroblast Myelinating schwann cell Oral mucosa squamous cell Dendritic cell Gabaergic neuron Intrahepatic cholangiocyte Pulmonary alveolar type 2 cell Purkinje myocyte M cell of gut Brush cell of trachea Basal cell of epithelium of bronchus Somatotroph Chondrocyte

Skin of body Lung Heart right ventricle Thymus Brown adipose tissue Gonadal fat pad Testis Diaphragm Brainstem Uterus Small intestine Mesenteric fat pad Trachea Aorta Tongue muscle Limb bone Liver Subcutaneous adipose tissue Colon Right cardiac atrium Urinary bladder Kidney Cardiac muscle tissue Heart Cerebral cortex Tongue Epithelium of tongue Heart left ventricle Vertebral column Mammary gland Hypothalamus-pituitary axis Pancreas Limb muscle Spleen Blood Bone element Retina Bone marrow Adipose tissue Left cardiac atrium

Post-juvenile adult stage

Normal

Female Male

Smart-seq2 10x 3' v2

Cell

Microcebus murinus

Homo sapiens

Malignant cell

Breast

66-year-old stage 69-year-old stage 37-year-old stage Middle aged stage 34-year-old stage 65-year-old stage 42-year-old stage 43-year-old stage Sixth decade stage 71-year-old stage 85-year-old stage 61-year-old stage 88-year-old stage 52-year-old stage 54-year-old stage 30-year-old stage 29-year-old stage 38-year-old stage Fifth decade stage 55-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 57-year-old stage 80 year-old and over stage 49-year-old stage 35-year-old stage Seventh decade stage 58-year-old stage 59-year-old stage 25-year-old stage Adult stage 67-year-old stage Late adult stage 32-year-old stage 64-year-old stage 45-year-old stage 62-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 60-79 year-old stage 36-year-old stage 63-year-old stage Eighth decade stage 47-year-old stage 79-year-old stage 73-year-old stage 83-year-old stage Prime adult stage Ninth decade stage

Invasive ductal breast carcinoma Breast cancer Estrogen-receptor positive breast cancer Breast apocrine carcinoma Invasive lobular breast carcinoma Metaplastic breast carcinoma Her2 positive breast carcinoma Breast mucinous carcinoma Triple-negative breast carcinoma Invasive tubular breast carcinoma Breast carcinoma

Female Male

10x 5' v2 10x 5' transcription profiling 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Oligodendrocyte precursor cell Oligodendrocyte Vascular leptomeningeal cell Pvalb chandelier gabaergic interneuron Lamp5 gabaergic interneuron Microglial cell Vip gabaergic interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron L5 extratelencephalic projecting glutamatergic cortical neuron L6b glutamatergic cortical neuron Pvalb gabaergic interneuron Near-projecting glutamatergic cortical neuron Cerebral cortex endothelial cell Caudal ganglionic eminence derived interneuron Sncg gabaergic interneuron Astrocyte of the cerebral cortex Sst gabaergic interneuron Corticothalamic-projecting glutamatergic cortical neuron

Primary visual cortex

42-year-old stage 43-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Mammary gland epithelial cell Basal cell Luminal epithelial cell of mammary gland

Breast

Adult stage Prime adult stage

Normal

Female

10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell B-2 b cell Natural killer cell Small pre-b-ii cell Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell B-1 b cell Pro-b cell Late pro-b cell Group 2 innate lymphoid cell Double-positive, alpha-beta thymocyte Early lymphoid progenitor Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Innate lymphoid cell Regulatory t cell Large pre-b-ii cell Mature b cell Promonocyte Hematopoietic stem cell Common myeloid progenitor Plasma cell Hematopoietic multipotent progenitor cell Megakaryocyte Granulocyte monocyte progenitor cell Naive thymus-derived cd4-positive, alpha-beta t cell Promyelocyte Immature b cell Megakaryocyte-erythroid progenitor cell Fraction a pre-pro b cell Double negative thymocyte

Skin of body Thymus Yolk sac Liver Gut wall Kidney Spleen Bone marrow Mesenteric lymph node

Carnegie stage 19 13th week post-fertilization stage Carnegie stage 13 14th week post-fertilization stage 15th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage Carnegie stage 23 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Central memory cd4-positive, alpha-beta t cell Igg plasmablast Neutrophil Activated cd4-positive, alpha-beta t cell, human Natural killer cell Erythrocyte Gamma-delta t cell Platelet Classical monocyte Plasmacytoid dendritic cell, human Lymphocyte Cd4-positive, alpha-beta cytotoxic t cell Naive thymus-derived cd8-positive, alpha-beta t cell Activated cd8-positive, alpha-beta t cell, human Memory b cell Regulatory t cell Plasmablast Iga plasmablast Hematopoietic stem cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Transitional stage b cell Naive b cell Double negative thymocyte Conventional dendritic cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Immature neutrophil Non-classical monocyte

Blood

37-year-old stage 75-year-old stage Sixth decade stage 53-year-old stage 61-year-old stage 54-year-old stage 68-year-old stage 48-year-old stage 39-year-old stage 29-year-old stage 38-year-old stage Fifth decade stage 84-year-old stage 82-year-old stage Third decade stage 80 year-old and over stage 49-year-old stage Seventh decade stage 59-year-old stage Adult stage 67-year-old stage 62-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 36-year-old stage Fourth decade stage 63-year-old stage Eighth decade stage 47-year-old stage 73-year-old stage 27-year-old stage

Covid-19 Normal

Female Male

Seq-well 10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell Neutrophil Club cell Ciliated cell Follicular dendritic cell Secretory cell Gamma-delta t cell Basal cell of epithelium of trachea Neuroendocrine cell Mature nk t cell Mast cell Pulmonary ionocyte Melanocyte Plasmacytoid dendritic cell, human Alternatively activated macrophage Cd8-positive, alpha-beta memory t cell Macrophage Memory b cell Cd16-positive, cd56-dim natural killer cell, human Innate lymphoid cell Regulatory t cell Duct epithelial cell Plasma cell Cd4-positive, alpha-beta t cell Langerhans cell Squamous epithelial cell T follicular helper cell Cd4-positive, alpha-beta memory t cell Tracheal goblet cell B cell Naive t cell Mucosal invariant t cell Monocyte Naive b cell Multiciliated epithelial cell Conventional dendritic cell Dendritic cell Cd16-negative, cd56-bright natural killer cell, human Brush cell of trachea

Bronchus Trachea Nasal cavity

Pediatric stage 52-year-old stage 39-year-old stage 56-year-old stage 25-year-old stage Adult stage Late adult stage Postnatal stage 70-year-old stage Newborn stage (0-28 days) 76-year-old stage 73-year-old stage Child stage (1-4 yo) Juvenile stage (5-14 yo)

Covid-19 Normal

Female Male

10x 5' v2 10x 5' v1

Cell

Callithrix jacchus

Glutamatergic neuron

Brodmann (1909) area 25 Dorsolateral prefrontal cortex Prefrontal cortex

Late adult stage Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fast muscle cell Muscle cell Stromal cell Thymic fibroblast type 1 Slow muscle cell Stromal cell of ovary Blood vessel smooth muscle cell Tendon cell Myometrial cell Schwann cell Melanocyte Smooth muscle cell Thymic fibroblast type 2 Connective tissue cell Hepatic stellate cell Adipocyte Mural cell Pancreatic stellate cell Bronchial smooth muscle cell Ventricular cardiac muscle cell Tongue muscle cell Fibroblast of breast Glial cell Mesenchymal cell Alveolar adventitial fibroblast Mesenchymal stem cell of adipose tissue Pericyte Mueller cell Skeletal muscle satellite stem cell Mesenchymal stem cell Regular atrial cardiac myocyte Adventitial cell Vascular associated smooth muscle cell Myofibroblast cell Leydig cell Fibroblast Theca cell Fibroblast of cardiac tissue Keratocyte

Inferior vena cava Skin of abdomen Skin of body Lung Ascending colon Heart right ventricle Thymus Brown adipose tissue Conjunctiva Stomach Testis Duodenum Inguinal lymph node Thoracic aorta Crista ampullaris Uterus Small intestine Anterior part of tongue Utricle of membranous labyrinth Exocrine pancreas Mucosa of stomach Left ovary Trachea Endometrium Aorta Coronary artery Cornea Sublingual gland Ileum Liver Endocrine pancreas Subcutaneous adipose tissue Ovary Right cardiac atrium Muscle of pelvic diaphragm Stomach smooth muscle Chorioretinal region Anterior segment of eyeball Cardiac ventricle Eye Right ovary Cardiac atrium Buccal mucosa Heart Abdominal aorta Tongue Sclera Muscularis mucosae of stomach Submandibular gland Mammary gland Jejunum Myometrium Posterior segment of eyeball Large intestine Eyelid Spleen Muscle of abdomen Retinal neural layer Left coronary artery Parotid gland Ocular surface region Lacrimal gland Lymph node Posterior part of tongue Bladder organ Bone marrow Adipose tissue Skin of chest Sigmoid colon Vasculature Prostate gland Mesenteric lymph node

69-year-old stage 37-year-old stage 26-year-old stage 61-year-old stage 38-year-old stage 56-year-old stage 55-year-old stage 57-year-old stage 74-year-old stage 59-year-old stage 67-year-old stage 33-year-old stage 45-year-old stage 46-year-old stage 60-year-old stage 36-year-old stage 40-year-old stage

Normal

Female Male

10x 5' v2 Smart-seq3 Smart-seq2 10x 3' v3

Cell