Mus musculus

Erythrocyte Hypendymal cell Vascular leptomeningeal cell Neural progenitor cell Ependymal cell Blood vessel endothelial cell Oligodendrocyte precursor cell Microglial cell Neuron Gabaergic neuron Glioblast Glutamatergic neuron

Diencephalon

Theiler stage 26 Theiler stage 20 Theiler stage 22 Theiler stage 24

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Naive b cell Regulatory t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Double negative thymocyte Naive thymus-derived cd4-positive, alpha-beta t cell Gamma-delta t cell T cell Cd8-positive, alpha-beta memory t cell Plasmablast Cd4-positive, alpha-beta memory t cell Double-positive, alpha-beta thymocyte Mucosal invariant t cell Memory t cell

Blood

50-year-old stage 52-year-old stage 35-year-old stage 63-year-old stage 37-year-old stage 58-year-old stage 24-year-old stage 73-year-old stage 84-year-old stage 49-year-old stage 59-year-old stage 54-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 74-year-old stage 53-year-old stage 55-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 32-year-old stage 45-year-old stage 70-year-old stage 76-year-old stage 67-year-old stage 40-year-old stage 60-year-old stage 30-year-old stage 79-year-old stage 51-year-old stage 71-year-old stage

Normal Covid-19

Female Male

10x 5' v1

Cell

Homo sapiens

Schwann cell Fibroblast Mural cell Endothelial cell of vascular tree Odontoblast Myeloid cell Epithelial cell Lymphocyte Muscle cell Melanocyte

Parotid gland Sublingual gland Buccal mucosa Minor salivary gland Submandibular gland Mucosa of lip Periodontium Mucosa of dorsum of tongue Soft palate Hard palate Dental pulp Gingiva

26-year-old stage 65-year-old stage 68-year-old stage 35-year-old stage 29-year-old stage 24-year-old stage 22-year-old stage 34-year-old stage 31-year-old stage 59-year-old stage 61-year-old stage 57-year-old stage 21-year-old stage 53-year-old stage Fourth decade stage 56-year-old stage Seventh decade stage 20-year-old stage 32-year-old stage 69-year-old stage 40-year-old stage Young adult stage 62-year-old stage Sixth decade stage 39-year-old stage 28-year-old stage 30-year-old stage 48-year-old stage 51-year-old stage 33-year-old stage

Normal

Female Male

10x 3' v2 10x 3' v3

Cell

Homo sapiens

Schwann cell Pancreatic a cell Type b pancreatic cell Mast cell Leukocyte Pancreatic d cell Pancreatic ductal cell Pancreatic stellate cell Pancreatic epsilon cell Pancreatic pp cell Endothelial cell Pancreatic acinar cell

Islet of langerhans

26-year-old stage 50-year-old stage 52-year-old stage 35-year-old stage 63-year-old stage 37-year-old stage 58-year-old stage 34-year-old stage 42-year-old stage 49-year-old stage 59-year-old stage 54-year-old stage 25-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 21-year-old stage 53-year-old stage 55-year-old stage 32-year-old stage 45-year-old stage 40-year-old stage 60-year-old stage 62-year-old stage 38-year-old stage 30-year-old stage 48-year-old stage 51-year-old stage

Normal Prediabetes syndrome Type 2 diabetes mellitus

Female Male

10x 3' v2 10x 3' v3

Cell

Mus musculus

Mature nk t cell Erythroblast Professional antigen presenting cell Endocardial cell Non-classical monocyte Bladder urothelial cell Kidney capillary endothelial cell Natural killer cell Schwann cell Erythrocyte Neutrophil Naive b cell Classical monocyte Smooth muscle cell of trachea Cd8-positive, alpha-beta t cell Late pro-b cell Pulmonary interstitial fibroblast Bladder cell Endothelial cell of lymphatic vessel Cell of skeletal muscle Regulatory t cell Dn4 thymocyte Pancreatic a cell Type b pancreatic cell Mast cell Leukocyte Smooth muscle cell of the pulmonary artery Fibroblast Cardiac neuron Promonocyte Monocyte Blood cell Erythroid progenitor cell, mammalian Mesangial cell Pericyte Megakaryocyte-erythroid progenitor cell Kidney proximal convoluted tubule epithelial cell Club cell Enterocyte of epithelium of large intestine Myeloid leukocyte Basophil Large intestine goblet cell Immature nk t cell Tuft cell Epithelial cell of proximal tubule Precursor b cell Endothelial cell of hepatic sinusoid Double negative thymocyte Kidney collecting duct principal cell Mesenchymal stem cell Macrophage Multiciliated columnar cell of tracheobronchial tree Pancreatic d cell Dendritic cell Basal epithelial cell of tracheobronchial tree T cell Kidney proximal straight tubule epithelial cell Hematopoietic precursor cell Kidney loop of henle thick ascending limb epithelial cell Kidney cell Vein endothelial cell Naive t cell Skeletal muscle satellite cell Epidermal cell Plasmatocyte Myeloid cell Granulocytopoietic cell Pancreatic ductal cell Kidney distal convoluted tubule epithelial cell Kidney loop of henle ascending limb epithelial cell Granulocyte Kidney cortex artery cell Epithelial cell Hepatocyte Intestinal crypt stem cell Endothelial cell of coronary artery Lymphocyte Hepatic stellate cell Mesenchymal stem cell of adipose tissue Macrophage dendritic cell progenitor Langerhans cell Dn3 thymocyte Basal cell of epidermis Kupffer cell Lung macrophage Pulmonary alveolar type 2 cell Fibroblast of cardiac tissue Plasma cell Stem cell of epidermis Proerythroblast Stromal cell Alveolar macrophage Pancreatic stellate cell Bronchial smooth muscle cell Mesenchymal cell Kidney collecting duct epithelial cell Pulmonary neuroendocrine cell Plasmacytoid dendritic cell Myeloid dendritic cell Cardiac muscle cell Pancreatic pp cell Fibroblast of lung Endothelial cell Duct epithelial cell Neuroendocrine cell Chondrocyte Immature t cell Cd4-positive, alpha-beta t cell Luminal epithelial cell of mammary gland Smooth muscle cell Epithelial cell of large intestine Fenestrated endothelial cell Immature b cell Intermediate monocyte Pancreatic acinar cell B cell Keratinocyte Adventitial cell Keratinocyte stem cell Hematopoietic stem cell Basal cell Thymocyte

Liver Limb muscle Kidney Bone marrow Trachea Large intestine Pancreas Heart Tongue Spleen Mammary gland Skin of body Adipose tissue Thymus Lung Bladder lumen

4-week-old stage 3-month-old stage 20-month-old stage and over 18-month-old stage

Normal

Female Male

10x 3' v2

Cell

Homo sapiens

Retinal bipolar neuron Retinal cone cell Amacrine cell Glial cell Retinal rod cell Retina horizontal cell

Macula lutea proper Peripheral region of retina Fovea centralis

65-year-old stage 73-year-old stage 84-year-old stage 83-year-old stage 78-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Microcebus murinus

Mature nk t cell Off-bipolar cell Oligodendrocyte Retinal bipolar neuron Bladder urothelial cell Natural killer cell Retinal cone cell Neutrophil Thyrotroph Cd8-positive, alpha-beta t cell Endothelial cell of lymphatic vessel Interstitial cell of cajal Pulmonary alveolar type 1 cell Granulocyte monocyte progenitor cell Brush cell of bronchus Pancreatic a cell Gonadtroph Renal intercalated cell Capillary endothelial cell Type b pancreatic cell Intrahepatic cholangiocyte Granulosa cell Epithelial cell of sweat gland Vascular associated smooth muscle cell Kidney loop of henle epithelial cell Fibroblast Erythroid progenitor cell Spermatocyte Monocyte Intestinal enteroendocrine cell Pericyte Kidney loop of henle thin ascending limb epithelial cell Tendon cell Kidney proximal convoluted tubule epithelial cell Club cell Kidney collecting duct intercalated cell Enterocyte of epithelium of large intestine Basophil Large intestine goblet cell Myelinating schwann cell Mesothelial cell of epicardium Mueller cell Epithelial cell of proximal tubule Somatotroph Ciliated cell Glomerular endothelial cell Endothelial cell of hepatic sinusoid Mesenchymal stem cell Corticotroph Macrophage Vasa recta descending limb cell Pancreatic d cell Dendritic cell T cell Kidney proximal straight tubule epithelial cell Hematopoietic precursor cell Mesothelial cell Kidney loop of henle thick ascending limb epithelial cell Non-myelinating schwann cell Brush cell of trachea Osteoblast Vein endothelial cell Oral mucosa squamous cell Slow muscle cell Epidermal cell Myeloid cell Leptomeningeal cell Small intestine goblet cell Pancreatic ductal cell Eosinophil Kidney distal convoluted tubule epithelial cell Adipocyte Epithelial cell Ependymal cell Hepatocyte Regular ventricular cardiac myocyte Erythroid lineage cell Lymphocyte On-bipolar cell Spermatid Oligodendrocyte precursor cell Hair follicle cell Langerhans cell Conventional dendritic cell Basal cell of epidermis Endothelial cell of sinusoid Regular atrial cardiac myocyte Renal beta-intercalated cell Pulmonary alveolar type 2 cell Platelet Nodal myocyte Pancreatic endocrine cell Plasma cell Renal alpha-intercalated cell Epithelial cell of small intestine Stromal cell Mammotroph Alveolar macrophage Megakaryocyte progenitor cell Enterocyte of epithelium of small intestine Myofibroblast cell M cell of gut Neuron Plasmacytoid dendritic cell Renal principal cell Cardiac muscle cell Pancreatic pp cell Fibroblast of lung Endothelial cell Secretory cell Neuroendocrine cell Gabaergic neuron Innate lymphoid cell Vasa recta ascending limb cell Chondrocyte Cd4-positive, alpha-beta t cell Epithelial cell of exocrine pancreas Smooth muscle cell Retinal rod cell Kidney loop of henle thin descending limb epithelial cell Epithelial cell of large intestine Endothelial cell of artery Preosteoblast Pancreatic acinar cell B cell Urothelial cell Podocyte Spermatogonium Macula densa epithelial cell Basal cell of epithelium of bronchus Purkinje myocyte Basal cell of epithelium of trachea Melanocyte Intestinal tuft cell Glutamatergic neuron Choroid plexus epithelial cell Reticular cell Fast muscle cell Astrocyte Epithelial cell of uterus Skeletal muscle satellite stem cell Retina horizontal cell

Heart left ventricle Liver Diaphragm Limb muscle Tongue muscle Colon Kidney Bone marrow Bone element Trachea Urinary bladder Pancreas Gonadal fat pad Cardiac muscle tissue Brainstem Heart Tongue Spleen Vertebral column Limb bone Small intestine Mesenteric fat pad Heart right ventricle Blood Mammary gland Skin of body Adipose tissue Uterus Thymus Right cardiac atrium Hypothalamus-pituitary axis Lung Testis Cerebral cortex Retina Brown adipose tissue Left cardiac atrium Subcutaneous adipose tissue Epithelium of tongue Aorta

Post-juvenile adult stage

Normal

Female Male

10x 3' v2 Smart-seq2

Cell

Homo sapiens

Malignant cell

Breast

80 year-old and over stage 85-year-old stage 80-year-old stage 64-year-old stage 50-year-old stage 52-year-old stage 65-year-old stage 82-year-old stage 43-year-old stage 41-year-old stage 35-year-old stage Fifth decade stage 63-year-old stage 37-year-old stage 29-year-old stage 58-year-old stage Ninth decade stage 73-year-old stage Adult stage Late adult stage 84-year-old stage 34-year-old stage 42-year-old stage 49-year-old stage 59-year-old stage 54-year-old stage 25-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage Eighth decade stage 83-year-old stage 46-year-old stage 55-year-old stage Seventh decade stage 47-year-old stage 36-year-old stage 32-year-old stage 60-79 year-old stage 45-year-old stage 70-year-old stage 69-year-old stage 67-year-old stage 88-year-old stage 60-year-old stage 62-year-old stage Sixth decade stage 38-year-old stage Prime adult stage 30-year-old stage 79-year-old stage 71-year-old stage Middle aged stage

Estrogen-receptor positive breast cancer Invasive lobular breast carcinoma Triple-negative breast carcinoma Her2 positive breast carcinoma Invasive ductal breast carcinoma Invasive tubular breast carcinoma Breast apocrine carcinoma Metaplastic breast carcinoma Breast cancer Breast mucinous carcinoma Breast carcinoma

Female Male

10x 3' v2 10x 3' v3 10x 5' transcription profiling 10x 5' v2 10x 5' v1

Cell

Homo sapiens

Oligodendrocyte L6b glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Vascular leptomeningeal cell Sst gabaergic interneuron Cerebral cortex endothelial cell Lamp5 gabaergic interneuron Pvalb gabaergic interneuron Oligodendrocyte precursor cell Sncg gabaergic interneuron Microglial cell Caudal ganglionic eminence derived interneuron Corticothalamic-projecting glutamatergic cortical neuron Astrocyte of the cerebral cortex L2/3-6 intratelencephalic projecting glutamatergic neuron Pvalb chandelier gabaergic interneuron Vip gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron

Primary visual cortex

50-year-old stage 43-year-old stage 29-year-old stage 42-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Mammary gland epithelial cell Luminal epithelial cell of mammary gland Basal cell

Breast

Adult stage Prime adult stage

Normal

Female

10x 3' v2 10x 3' v3

Cell

Homo sapiens

Megakaryocyte Natural killer cell Late pro-b cell Regulatory t cell Granulocyte monocyte progenitor cell Fraction a pre-pro b cell Promonocyte Common myeloid progenitor Megakaryocyte-erythroid progenitor cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Group 2 innate lymphoid cell Double negative thymocyte Naive thymus-derived cd4-positive, alpha-beta t cell B-2 b cell Hematopoietic multipotent progenitor cell T cell Mature b cell Large pre-b-ii cell Small pre-b-ii cell Promyelocyte Pro-b cell Plasma cell B-1 b cell Double-positive, alpha-beta thymocyte Early lymphoid progenitor Innate lymphoid cell Immature b cell Hematopoietic stem cell Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell

Liver Kidney Bone marrow Yolk sac Spleen Skin of body Mesenteric lymph node Gut wall Thymus

15th week post-fertilization stage 11th week post-fertilization stage 14th week post-fertilization stage 9th week post-fertilization stage 13th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 19 Carnegie stage 20 Carnegie stage 13

Normal

Female Male

10x 3' v2 10x 5' v1

Cell

Homo sapiens

Non-classical monocyte Natural killer cell Erythrocyte Neutrophil Naive b cell Classical monocyte Transitional stage b cell Regulatory t cell Activated cd8-positive, alpha-beta t cell, human Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Double negative thymocyte Igg plasmablast Naive thymus-derived cd4-positive, alpha-beta t cell Gamma-delta t cell Central memory cd4-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell, human Plasmacytoid dendritic cell, human Plasmablast Cd16-negative, cd56-bright natural killer cell, human Lymphocyte Iga plasmablast Conventional dendritic cell Platelet Immature neutrophil Mucosal invariant t cell Cd4-positive, alpha-beta cytotoxic t cell Effector memory cd8-positive, alpha-beta t cell Hematopoietic stem cell

Blood

80 year-old and over stage 68-year-old stage 82-year-old stage Fifth decade stage 63-year-old stage 37-year-old stage 29-year-old stage 73-year-old stage Adult stage 75-year-old stage 84-year-old stage 49-year-old stage 59-year-old stage 54-year-old stage 61-year-old stage Eighth decade stage 53-year-old stage Fourth decade stage 46-year-old stage 78-year-old stage Seventh decade stage 47-year-old stage 36-year-old stage 70-year-old stage 67-year-old stage 60-year-old stage 62-year-old stage Sixth decade stage 39-year-old stage 38-year-old stage 27-year-old stage 48-year-old stage Third decade stage

Normal Covid-19

Female Male

10x 3' v2 10x 3' v3 Seq-well

Cell