Homo sapiens

Medial ganglionic eminence derived interneuron

Subthalamic nucleus Medial geniculate body Brodmann (1909) area 25 Lateral amygdaloid nucleus Anterior nuclear group Corticomedial nuclear complex Temporal fusiform gyrus Brodmann (1909) area 19 Centromedian nucleus of thalamus Intralaminar nuclear group Medial dorsal nucleus of thalamus Parabrachial nucleus Primary visual cortex Claustrum of brain Inferior temporal gyrus Rostral ca3 Nucleus of medulla oblongata Red nucleus Subicular complex Pontine nuclear group Globus pallidus Piriform cortex Hippocampal field Lateral nuclear group of thalamus Brodmann (1909) area 13 Middle temporal gyrus Central amygdaloid nucleus Ventral anterior nucleus of thalamus Septal nuclear complex Cerebellar nuclear complex Median tuberal portion Extrastriate cortex Epithalamus Brodmann (1909) area 38 Lateral entorhinal cortex Supraoptic nucleus Brodmann (1909) area 32 Medial entorhinal cortex Midbrain tectum Inferior olivary complex Brodmann (1909) area 40 Inferior frontal gyrus Substantia nigra Agranular insular cortex Brodmann (1909) area 43 Nucleus accumbens Gray matter of midbrain Substantia innominata Anterior cortical amygdaloid nucleus Primary somatosensory cortex Brodmann (1909) area 14 Anterior olfactory nucleus Accessory basal amygdaloid nucleus Pulvinar nucleus Primary auditory cortex Hypothalamus Brodmann (1909) area 23 Primary motor cortex Brodmann (1909) area 24 Brodmann (1909) area 46 Medial zone of hypothalamus Posterior parahippocampal gyrus Basolateral amygdaloid nuclear complex Perirhinal cortex Granular insular cortex Retrosplenial region Cuneus cortex Dentate gyrus of hippocampal formation Lateral posterior nucleus of thalamus Mammillary body Superior temporal gyrus Body of caudate nucleus Uncal ca1 Bed nucleus of stria terminalis Superior parietal cortex Lateral geniculate body Putamen Pretectal region Nucleus of dorsal thalamus Preoptic area

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Intestine goblet cell Best4+ enterocyte Paneth cell Enteroendocrine cell Intestinal crypt stem cell Tuft cell of small intestine Enterocyte Transit amplifying cell Mucous neck cell of gastric gland Foveolar cell of stomach M cell of gut

Duodenum Ileal epithelium Small intestine Ileum Ileum lamina propria Lamina propria of small intestine Epithelium of small intestine Jejunum Duodenal epithelium Mesenteric lymph node

37-year-old stage 13-year-old stage Sixth decade stage 87-year-old stage 52-year-old stage 29-year-old stage 56-year-old stage Fifth decade stage 50-year-old stage 12-year-old stage Third decade stage 9-year-old stage 14-year-old stage Seventh decade stage 25-year-old stage 67-year-old stage 45-year-old stage 60-year-old stage 18-year-old stage 31-year-old stage 36-year-old stage Fourth decade stage 22-year-old stage 20-year-old stage Eighth decade stage Prime adult stage 11-year-old stage 6-year-old stage 10-year-old stage 4-year-old stage

Celiac disease Normal Crohn disease

Female Male

10x 3' v1 10x 5' v2 10x 5' transcription profiling 10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Endocardial cell Schwann cell Smooth muscle cell Cardiac blood vessel endothelial cell Lymphocyte Adipocyte Macrophage Mesothelial cell Cardiac muscle cell Pericyte Neuron Fibroblast

Right atrium auricular region

Sixth decade stage Fifth decade stage Seventh decade stage Eighth decade stage Ninth decade stage

Heart failure Normal Heart valve disorder Myocardial ischemia

Female Male

10x 3' v3

Nucleus

Homo sapiens

Club cell Ciliated cell Lung secretory cell Neuroendocrine cell Stem cell Basal cell Goblet cell Pulmonary alveolar type 1 cell Pulmonary alveolar type 2 cell

Bronchus Lung Nasopharynx Alveolar sac Lung epithelium

Normal

10x 5' v1 10x 3' v3 10x 3' v2

Cell

Homo sapiens

T cell

Ascitic fluid Diaphragm Caecum Peritoneum Parietal peritoneum Left ovary Liver Abdomen Urinary bladder Intestine Right ovary Adnexa of uterus Fallopian tube Large intestine Transverse colon Omentum Paracolic gutter Abdominal wall Lymph node

66-year-old stage 69-year-old stage 75-year-old stage 71-year-old stage 61-year-old stage 68-year-old stage 56-year-old stage 55-year-old stage 50-year-old stage 57-year-old stage 80 year-old and over stage 58-year-old stage 59-year-old stage 77-year-old stage 64-year-old stage 45-year-old stage 41-year-old stage 70-year-old stage 46-year-old stage 60-year-old stage 78-year-old stage 63-year-old stage 47-year-old stage 76-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Homo sapiens

Neutrophil Granulocyte Kupffer cell Mast cell Pre-conventional dendritic cell Plasmacytoid dendritic cell Early lymphoid progenitor Common dendritic progenitor Macrophage Myelocyte Promonocyte Hematopoietic stem cell Common myeloid progenitor Hematopoietic multipotent progenitor cell Megakaryocyte Langerhans cell Granulocyte monocyte progenitor cell Promyelocyte Megakaryocyte-erythroid progenitor cell Monocyte Fibroblast Osteoclast Dendritic cell

Skin of body Thymus Yolk sac Liver Gut wall Kidney Spleen Bone marrow Mesenteric lymph node

Carnegie stage 19 13th week post-fertilization stage Carnegie stage 13 14th week post-fertilization stage 15th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage Carnegie stage 23 10th week post-fertilization stage Carnegie stage 22 11th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Homo sapiens

Gamma-delta t cell Alpha-beta t cell Cd8-positive, alpha-beta memory t cell, cd45ro-positive Cd4-positive helper t cell Effector memory cd4-positive, alpha-beta t cell Lymphocyte Cd8-positive, alpha-beta memory t cell Group 3 innate lymphoid cell Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Cd16-positive, cd56-dim natural killer cell, human Regulatory t cell T follicular helper cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Cd16-negative, cd56-bright natural killer cell, human

Lung Thymus Duodenum Jejunal epithelium Caecum Skeletal muscle tissue Ileum Liver Thoracic lymph node Spleen Transverse colon Jejunum lamina propria Omentum Blood Bone marrow Sigmoid colon Mesenteric lymph node

Sixth decade stage 56-year-old stage Seventh decade stage 67-year-old stage Eighth decade stage

Normal

Female Male

10x 5' v2 10x 5' v1 10x 3' v3

Cell

Homo sapiens

T cell Neutrophil Natural killer cell Mast cell Erythroid lineage cell Plasmacytoid dendritic cell Myeloid dendritic cell Megakaryocyte progenitor cell Myeloid cell Plasma cell Hematopoietic multipotent progenitor cell Malignant cell B cell Monocyte Fibroblast

Bone marrow

Pediatric stage

T-cell childhood acute lymphocytic leukemia

Female Male

10x 5' v2

Cell

Homo sapiens

Glutamatergic neuron Forebrain radial glial cell Neuronal-restricted precursor

Brain

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 20th week post-fertilization stage 17th week post-fertilization stage 12th week post-fertilization stage 16th week post-fertilization stage 10th week post-fertilization stage 18th week post-fertilization stage 11th week post-fertilization stage

Complete trisomy 21 Normal

Female Male

10x multiome

Nucleus

Mus musculus

Glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Smooth muscle cell Tanycyte Dopaminergic neuron Lymphocyte Ependymal cell Macrophage Microglial cell Neuroblast (sensu vertebrata) Glycinergic neuron Choroid plexus epithelial cell Bergmann glial cell Pericyte Monocyte Astrocyte Dendritic cell Gabaergic neuron

Striatum Thalamic complex Neocortex Hindbrain Pallidum Cortical subplate White matter Cerebellum Brain Ventricular system of brain Hippocampal formation

9-week-old stage

Normal

Male

Merfish

Mus musculus

Glutamatergic neuron Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Vascular leptomeningeal cell Smooth muscle cell Tanycyte Dopaminergic neuron Lymphocyte Ependymal cell Macrophage Microglial cell Neuroblast (sensu vertebrata) Glycinergic neuron Choroid plexus epithelial cell Bergmann glial cell Pericyte Monocyte Astrocyte Dendritic cell Gabaergic neuron

Striatum Thalamic complex Neocortex Hindbrain Pallidum Cortical subplate White matter Cerebellum Brain Ventricular system of brain Hippocampal formation

9-week-old stage

Normal

Male

Merfish

Mus musculus

Osteoblast Muscle cell Natural killer cell Endothelial cell of lymphatic vessel Erythrocyte Fibroblast of dermis Mast cell Peridermal cell Hypertrophic chondrocyte Tendon cell Basal cell Endothelial cell of artery Schwann cell Melanocyte Smooth muscle cell Epithelial cell Primitive red blood cell Chondroblast Macrophage Innate lymphoid cell Myelocyte Onychocyte Common myeloid progenitor Vein endothelial cell Mesenchymal cell Megakaryocyte Skeletal muscle myoblast Myoblast B cell Pericyte Monocyte Basophil Conventional dendritic cell Hair follicle melanocyte Fibroblast Schwann cell precursor Chondrocyte Muscle fibroblast

Hindlimb Forelimb

Theiler stage 22 Theiler stage 24 Theiler stage 18 Theiler stage 16 Theiler stage 19 Theiler stage 26 Theiler stage 20 Theiler stage 21 Theiler stage 23

Normal

10x 3' v3 10x 3' v2

Cell