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893
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,077
Single cell portal
183
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Most cells
Fewest cells
2343
datasets
CELLxGENE
189,902 cells
•
Ivanova et al., 2023
mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+9
Natural killer cell
Blood
Blood
Fifth decade stage
+3
Fifth decade stage
Normal
+1
Normal
Female
+1
Female
10x 5' v2
+1
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Cd8-positive, alpha-beta t cell
Monocyte
Gamma-delta t cell
Dendritic cell
T cell
Stem cell
Mucosal invariant t cell
Cd4-positive, alpha-beta t cell
B cell
Tissue
Blood
Developmental stage
Fifth decade stage
Fourth decade stage
Seventh decade stage
Sixth decade stage
Disease
Normal
Covid-19
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
GEO series:GSE247917
Single Cell Portal
186,661 cells
Explore
Homo sapiens
Homo sapiens
Mature nk t cell
+19
Mature nk t cell
Normal
+1
Normal
Organism
Homo sapiens
Cell type
Mature nk t cell
Retinal bipolar neuron
Retinal cone cell
Schwann cell
Mast cell
Fibroblast
Mural cell
Amacrine cell
Mueller cell
T cell
Retinal ganglion cell
Retinal pigment epithelial cell
Myeloid cell
Muscle cell
Endothelial cell
Retinal rod cell
B cell
Melanocyte
Astrocyte
Retina horizontal cell
Tissue
Developmental stage
Disease
Normal
Age-related macular degeneration
Sex
Technology
Suspension type
CELLxGENE
186,271 cells
•
Braun et al., 2023
Comprehensive cell atlas of the first-trimester developing human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+5
Oligodendrocyte
Dorsal plus ventral thalamus
+2
Dorsal plus ventral thalamus
15th week post-fertilization stage
+2
15th week post-fertilization stage
Normal
Normal
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Oligodendrocyte
Neuroblast (sensu vertebrata)
Neuron
Glioblast
Radial glial cell
Neuroblast (sensu nematoda and protostomia)
Tissue
Dorsal plus ventral thalamus
Hypothalamus
Diencephalon
Developmental stage
15th week post-fertilization stage
9th week post-fertilization stage
Carnegie stage 20
Disease
Normal
Sex
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006049
Github:linnarsson-lab/developing-human-brain?tab=readme-ov-file
CELLxGENE
185,477 cells
•
Jorstad et al., 2023
Transcriptomic cytoarchitecture reveals principles of human neocortex organization
Explore
h5ad
Homo sapiens
Homo sapiens
Sst gabaergic interneuron
+2
Sst gabaergic interneuron
Angular gyrus
+7
Angular gyrus
50-year-old stage
+5
50-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sst gabaergic interneuron
Pvalb gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Tissue
Angular gyrus
Anterior cingulate cortex
Primary motor cortex
Primary visual cortex
Middle temporal gyrus
Primary auditory cortex
Primary somatosensory cortex
Dorsolateral prefrontal cortex
Developmental stage
50-year-old stage
43-year-old stage
29-year-old stage
42-year-old stage
60-year-old stage
Sixth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
Github:AllenInstitute/human_cross_areal
NeMo archive:dat-rg2rc5m
Allen Brain Map Atlases:rnaseq/human-multiple-cortical-areas-smart-seq
CELLxGENE
185,226 cells
•
Li et al., 2023
A single-cell atlas of CD19 chimeric antigen receptor T cells
Explore
h5ad
Homo sapiens
Homo sapiens
Cd8-positive, alpha-beta t cell
Cd8-positive, alpha-beta t cell
T cell
T cell
Fifth decade stage
+6
Fifth decade stage
B-cell non-hodgkin lymphoma
B-cell non-hodgkin lymphoma
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Cd8-positive, alpha-beta t cell
Tissue
T cell
Developmental stage
Fifth decade stage
Ninth decade stage
Eighth decade stage
Fourth decade stage
Seventh decade stage
Sixth decade stage
Third decade stage
Disease
B-cell non-hodgkin lymphoma
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
EGA dataset:EGAD00001006325
DOI:10.1038/s41591-020-1061-7
CELLxGENE collection:be21c2d1-2392-47d0-96fb-c625d115e0dc
CELLxGENE
183,161 cells
•
Kedlian et al., 2024
Human skeletal muscle aging atlas
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+42
Natural killer cell
Intercostal muscle
Intercostal muscle
Eighth decade stage
+5
Eighth decade stage
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
+1
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of arteriole
Erythrocyte
Naive b cell
Cd8-positive, alpha-beta t cell
Endothelial cell of lymphatic vessel
Fibroblast of the aortic adventitia
Capillary endothelial cell
Mast cell
Fibroblast
Mural cell
Pericyte
Tendon cell
Myelinating schwann cell
Perineurial cell
Memory b cell
Type ii muscle cell
Mature neutrophil
Macrophage
Type i muscle cell
T cell
Cd14-low, cd16-positive monocyte
Mesothelial cell
Non-myelinating schwann cell
Vein endothelial cell
Naive t cell
Cd16-negative, cd56-bright natural killer cell, human
Eosinophil
Adipocyte
Blood vessel endothelial cell
Conventional dendritic cell
Plasma cell
Immature neutrophil
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Muscle cell
Plasmacytoid dendritic cell
Cd4-positive, alpha-beta t cell
Cd16-positive, cd56-dim natural killer cell, human
Smooth muscle cell
Endothelial cell of artery
B cell
Cd14-positive, cd16-low monocyte
Skeletal muscle satellite stem cell
Tissue
Intercostal muscle
Developmental stage
Eighth decade stage
Fourth decade stage
Seventh decade stage
Young adult stage
Sixth decade stage
Third decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Nucleus
Related Links
muscleageingcellatlas.org
ArrayExpress BioStudies:E-MTAB-13874
CELLxGENE
182,548 cells
•
Pelka et al., 2021
Spatially organized multicellular immune hubs in human colorectal cancer
Explore
h5ad
Homo sapiens
Homo sapiens
Mature nk t cell
+23
Mature nk t cell
Colorectum
Colorectum
64-year-old stage
+34
64-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Mature nk t cell
Natural killer cell
Mature conventional dendritic cell
Cd8-positive, alpha-beta t cell
Monocyte
Igg plasma cell
Group 3 innate lymphoid cell
T-helper 17 cell
Activated cd4-positive, alpha-beta t cell
Macrophage
Gamma-delta t cell
Dendritic cell
T cell
Cd8-positive, alpha-beta memory t cell
Mature b cell
Granulocyte
Conventional dendritic cell
Germinal center b cell
Iga plasma cell
Cd4-positive, cd25-positive, alpha-beta regulatory t cell
Plasmacytoid dendritic cell
Cd4-positive, alpha-beta t cell
T follicular helper cell
Effector cd8-positive, alpha-beta t cell
Tissue
Colorectum
Developmental stage
64-year-old stage
91-year-old stage
50-year-old stage
52-year-old stage
82-year-old stage
35-year-old stage
58-year-old stage
73-year-old stage
84-year-old stage
42-year-old stage
49-year-old stage
59-year-old stage
61-year-old stage
57-year-old stage
89-year-old stage
53-year-old stage
56-year-old stage
55-year-old stage
77-year-old stage
78-year-old stage
47-year-old stage
36-year-old stage
45-year-old stage
70-year-old stage
81-year-old stage
76-year-old stage
69-year-old stage
67-year-old stage
90-year-old stage
60-year-old stage
62-year-old stage
72-year-old stage
48-year-old stage
51-year-old stage
71-year-old stage
Disease
Normal
Colon adenocarcinoma
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
BroadInstitute Single-Cell Portal:SCP1162/human-colon-cancer-atlas-c295#study-visualize
broad.io
GEO series:GSE178341
dbGaP Study:phs002407
HumanCellAtlas:6f03e4ad-9305-4bfa-a5b6-929ffb1d94bd
CELLxGENE
182,151 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Natural killer cell
+17
Natural killer cell
Eyeball of camera-type eye
+3
Eyeball of camera-type eye
24th week post-fertilization stage
+38
24th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Natural killer cell
Endothelial cell of arteriole
Mast cell
Fibroblast
Monocyte
Pericyte
Myelinating schwann cell
Macrophage
Dendritic cell
T cell
Non-myelinating schwann cell
Retinal pigment epithelial cell
Endothelial cell of venule
Blood vessel smooth muscle cell
Plasma cell
Fenestrated endothelial cell
B cell
Melanocyte
Tissue
Eyeball of camera-type eye
Optic choroid
Chorioretinal region
Pigmented layer of retina
Developmental stage
24th week post-fertilization stage
80 year-old and over stage
80-year-old stage
64-year-old stage
15th week post-fertilization stage
52-year-old stage
82-year-old stage
43-year-old stage
41-year-old stage
63-year-old stage
11th week post-fertilization stage
21st week post-fertilization stage
75-year-old stage
84-year-old stage
22nd week post-fertilization stage
1-month-old stage
86-year-old stage
54-year-old stage
13th week post-fertilization stage
61-year-old stage
11-year-old stage
19th week post-fertilization stage
83-year-old stage
89-year-old stage
77-year-old stage
78-year-old stage
12th week post-fertilization stage
10th week post-fertilization stage
81-year-old stage
76-year-old stage
6-month-old stage
40-year-old stage
88-year-old stage
Newborn stage (0-28 days)
17th week post-fertilization stage
16th week post-fertilization stage
39-year-old stage
27th week post-fertilization stage
79-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
10x 5' v2
Suspension type
Cell
Related Links
celltype.info
CELLxGENE
180,956 cells
•
Sepp et al., 2023
Cellular development and evolution of the mammalian cerebellum
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
+23
Oligodendrocyte
Cerebellum vermis lobule
+4
Cerebellum vermis lobule
52-year-old stage
+15
52-year-old stage
Normal
+3
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Immature astrocyte
Unipolar brush cell
Cerebellar granule cell precursor
Interneuron
Neuroblast (sensu vertebrata)
Leukocyte
Progenitor cell
Noradrenergic cell
Meningeal macrophage
Purkinje cell
Committed oligodendrocyte precursor
T cell
Central nervous system macrophage
Erythroid lineage cell
Oligodendrocyte precursor cell
Cerebellar granule cell
Microglial cell
Brain vascular cell
Gabaergic neuron
Macroglial cell
Glioblast
Bergmann glial cell
Glutamatergic neuron
Tissue
Cerebellum vermis lobule
Hemisphere part of cerebellar posterior lobe
Dentate nucleus
Cerebellum
Cerebellar cortex
Developmental stage
52-year-old stage
11th week post-fertilization stage
3-year-old stage
42-year-old stage
Carnegie stage 18
9th week post-fertilization stage
Carnegie stage 22
46-year-old stage
44-year-old stage
7-month-old stage
6-month-old stage
Newborn stage (0-28 days)
17th week post-fertilization stage
Carnegie stage 19
20th week post-fertilization stage
9-month-old stage
Disease
Normal
Congenital heart disease
Acute myocardial infarction
Heart failure
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Nucleus
Related Links
home.kaessmannlab.org
DOI:10.11588/data/QDOC4E
apps.kaessmannlab.org
gitlab.com
Single Cell Portal
179,697 cells
Explore
Homo sapiens
Homo sapiens
Megakaryocyte
+13
Megakaryocyte
Normal
+1
Normal
10x 3' v3
10x 3' v3
Organism
Homo sapiens
Cell type
Megakaryocyte
Endothelial cell of lymphatic vessel
Mast cell
Vascular associated smooth muscle cell
Cardiac neuron
Pericyte
Cardiac atrium fibroblast
Macrophage
T cell
Mesothelial cell
Adipocyte
Cardiac muscle cell
Cardiac endothelial cell
B cell
Tissue
Developmental stage
Disease
Normal
Atrial fibrillation
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
178,815 cells
•
Kamath et al., 2022
Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte
Oligodendrocyte
Substantia nigra pars compacta
Substantia nigra pars compacta
91-year-old stage
+12
91-year-old stage
Normal
+2
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte
Tissue
Substantia nigra pars compacta
Developmental stage
91-year-old stage
82-year-old stage
75-year-old stage
49-year-old stage
92-year-old stage
74-year-old stage
83-year-old stage
89-year-old stage
78-year-old stage
70-year-old stage
76-year-old stage
90-year-old stage
79-year-old stage
Disease
Normal
Lewy body dementia
Parkinson disease
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
macoskolab.com
BroadInstitute Single-Cell Portal:SCP1768
GEO series:GSE178265
HumanCellAtlas:c412be53-cf95-47c7-980c-c0a0caa2d3a0
CELLxGENE
175,387 cells
•
Tian et al., 2023
Single-cell DNA methylation and 3D genome architecture in the human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Direct pathway medium spiny neuron
+11
Direct pathway medium spiny neuron
Hippocampal formation
+43
Hippocampal formation
29-year-old stage
+2
29-year-old stage
Normal
Normal
Male
Male
Snmc-seq2
Snmc-seq2
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Direct pathway medium spiny neuron
Sst gabaergic interneuron
Purkinje cell
Indirect pathway medium spiny neuron
Lamp5 gabaergic interneuron
Pvalb gabaergic interneuron
Thalamic excitatory neuron
Central nervous system neuron
Cerebellar neuron
Sncg gabaergic interneuron
Pvalb chandelier gabaergic interneuron
Vip gabaergic interneuron
Tissue
Hippocampal formation
Agranular insular cortex
Brodmann (1909) area 24
Medial dorsal nucleus of thalamus
Body of caudate nucleus
Insula
Posterior parahippocampal gyrus
Granular insular cortex
Substantia innominata
Hippocampal field
Central nucleus of inferior colliculus
Central amygdaloid nucleus
Corticomedial nuclear complex
Bed nucleus of stria terminalis
Lateral entorhinal cortex
Brodmann (1909) area 19
Brodmann (1909) area 38
Anterior cingulate cortex
Brodmann (1909) area 46
Primary motor cortex
Claustrum of brain
Inferior temporal gyrus
Primary visual cortex
Cuneus cortex
Pontine nuclear group
Middle temporal gyrus
Subiculum
Parietal cortex
Secondary visual cortex
Septal nuclear complex
Primary auditory cortex
Piriform cortex
Primary somatosensory cortex
Medial entorhinal cortex
Globus pallidus
Basolateral amygdaloid nuclear complex
Brodmann (1909) area 25
Cerebellum
Amygdala
Prefrontal cortex
Nucleus accumbens
Pulvinar nucleus
Dentate gyrus of hippocampal formation
Putamen
Developmental stage
29-year-old stage
58-year-old stage
42-year-old stage
Disease
Normal
Sex
Male
Technology
Snmc-seq2
Suspension type
Nucleus
Related Links
GEO series:GSE215353
NeMo archive:dat-jx4eu3g
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