Mus musculus

Gabaergic neuron

Anterior cerebral artery Anterior olfactory nucleus Caudate-putamen Cerebral cortex Dentate gyrus of hippocampal formation Hippocampal field Lateral septal complex Nucleus accumbens Olfactory cortex Orbitofrontal cortex Pallidum Piriform cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Secondary somatosensory cortex

Prime adult stage

Normal

Male

Scatac-seq

Nucleus

Homo sapiens

Mast cell Monocyte Dendritic cell

Abdomen Abdominal wall Adnexa of uterus Ascitic fluid Caecum Diaphragm Fallopian tube Intestine Large intestine Left ovary Liver Lymph node Omentum Paracolic gutter Parietal peritoneum Peritoneum Right ovary Transverse colon Urinary bladder

80 year-old and over stage 64-year-old stage 50-year-old stage 68-year-old stage 41-year-old stage 63-year-old stage 58-year-old stage 75-year-old stage 59-year-old stage 66-year-old stage 61-year-old stage 57-year-old stage 46-year-old stage 56-year-old stage 55-year-old stage 77-year-old stage 78-year-old stage 47-year-old stage 45-year-old stage 70-year-old stage 76-year-old stage 69-year-old stage 60-year-old stage 71-year-old stage

Malignant ovarian serous tumor

Female

10x 3' v3

Cell

Homo sapiens

Oligodendrocyte Interneuron Schwann cell Sensory neuron of dorsal root ganglion Neuroblast (sensu vertebrata) Dopaminergic neuron Vascular associated smooth muscle cell Leukocyte Progenitor cell Pericyte Vascular leptomeningeal cell Neural progenitor cell Purkinje cell Committed oligodendrocyte precursor Perivascular macrophage Oligodendrocyte precursor cell Microglial cell Neuron Endothelial cell Gabaergic neuron Immature t cell Glycinergic neuron Serotonergic neuron Glioblast Glutamatergic neuron Radial glial cell Neuroblast (sensu nematoda and protostomia)

Brain Cerebellum Diencephalon Hindbrain Medulla oblongata Midbrain Pons Telencephalon

Embryonic stage 9th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 10th week post-fertilization stage

Normal

Female Male

10x multiome

Nucleus

Homo sapiens

Neutrophil Endothelial cell of lymphatic vessel Mast cell Monocyte Pericyte Immature nk t cell Macrophage Dendritic cell T cell Mesothelial cell Adipocyte Preadipocyte Endothelial cell Stromal cell of endometrium Smooth muscle cell B cell

Omental fat pad Subcutaneous adipose tissue

68-year-old stage 41-year-old stage 35-year-old stage 29-year-old stage 58-year-old stage 24-year-old stage 73-year-old stage 49-year-old stage 59-year-old stage 54-year-old stage 57-year-old stage 53-year-old stage 36-year-old stage 51-year-old stage 71-year-old stage

Normal

Female Male

10x 3' v3 Drop-seq

Nucleus Cell

Homo sapiens

Schwann cell Splanchnic mesodermal cell Fibroblast Blood cell Mesodermal cell Lateral mesodermal cell Paraxial cell Neural progenitor cell Intermediate mesodermal cell Epidermal cell Sensory neuron Endodermal cell Epithelial cell Neuron Endothelial cell Primordial germ cell Somatic stem cell

Embryoid body

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Cd4-positive, alpha-beta t cell

T cell

Fifth decade stage Ninth decade stage Eighth decade stage Fourth decade stage Seventh decade stage Sixth decade stage Third decade stage

B-cell non-hodgkin lymphoma

Female Male

10x 5' v1

Cell

Homo sapiens

L6b glutamatergic cortical neuron Hippocampal neuron Near-projecting glutamatergic cortical neuron Amygdala excitatory neuron L6 corticothalamic-projecting glutamatergic cortical neuron Hippocampal ca1-3 neuron L2/3-6 intratelencephalic projecting glutamatergic neuron Dentate gyrus neuron L5 extratelencephalic projecting glutamatergic cortical neuron

Brodmann (1909) area 19 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 38 Brodmann (1909) area 46 Agranular insular cortex Amygdala Anterior cingulate cortex Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Central nucleus of inferior colliculus Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Globus pallidus Granular insular cortex Hippocampal field Hippocampal formation Inferior temporal gyrus Insula Lateral entorhinal cortex Medial dorsal nucleus of thalamus Medial entorhinal cortex Middle temporal gyrus Nucleus accumbens Parietal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Secondary visual cortex Septal nuclear complex Subiculum Substantia innominata

29-year-old stage 58-year-old stage 42-year-old stage

Normal

Male

Snmc-seq2

Nucleus

Homo sapiens

L6b glutamatergic cortical neuron Hippocampal neuron Near-projecting glutamatergic cortical neuron Amygdala excitatory neuron L6 corticothalamic-projecting glutamatergic cortical neuron Hippocampal ca1-3 neuron L2/3-6 intratelencephalic projecting glutamatergic neuron Dentate gyrus neuron L5 extratelencephalic projecting glutamatergic cortical neuron

Brodmann (1909) area 19 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 38 Brodmann (1909) area 46 Agranular insular cortex Amygdala Anterior cingulate cortex Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Central nucleus of inferior colliculus Claustrum of brain Corticomedial nuclear complex Cuneus cortex Dentate gyrus of hippocampal formation Globus pallidus Granular insular cortex Hippocampal field Hippocampal formation Inferior temporal gyrus Insula Lateral entorhinal cortex Medial dorsal nucleus of thalamus Medial entorhinal cortex Middle temporal gyrus Nucleus accumbens Parietal cortex Piriform cortex Pontine nuclear group Posterior parahippocampal gyrus Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Pulvinar nucleus Putamen Secondary visual cortex Septal nuclear complex Subiculum Substantia innominata

29-year-old stage 58-year-old stage 42-year-old stage

Normal

Male

Snmc-seq2

Nucleus

Homo sapiens

Neural progenitor cell Neuron

Forebrain

Carnegie stage 01

Normal

Female Male

10x 3' v3

Cell

Macaca mulatta

Neutrophil Mast cell Macrophage T cell Eosinophil Epithelial cell B cell

Disease

Seq-well

Homo sapiens

Natural killer cell Memory regulatory t cell Erythrocyte Naive b cell Cd8-positive, alpha-beta t cell Cd14-positive monocyte Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Double negative thymocyte Naive thymus-derived cd4-positive, alpha-beta t cell Gamma-delta t cell Cd14-low, cd16-positive monocyte Central memory cd4-positive, alpha-beta t cell Myeloid dendritic cell, human Plasmablast Cd16-negative, cd56-bright natural killer cell, human Conventional dendritic cell Platelet Central memory cd8-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell Mucosal invariant t cell Cd4-positive, alpha-beta cytotoxic t cell Plasmacytoid dendritic cell Innate lymphoid cell Cd4-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell Naive regulatory t cell B cell Hematopoietic stem cell

Blood

Normal

10x 3' v3

Cell

Homo sapiens

Oligodendrocyte Oligodendrocyte precursor cell Microglial cell Neuron Endothelial cell Astrocyte

Frontal cortex

50-year-old stage 68-year-old stage 43-year-old stage 58-year-old stage 73-year-old stage 59-year-old stage 54-year-old stage 66-year-old stage 61-year-old stage 56-year-old stage 47-year-old stage 70-year-old stage 72-year-old stage 51-year-old stage 71-year-old stage

Normal Amyotrophic lateral sclerosis Amyotrophic lateral sclerosis 26 with or without frontotemporal dementia

Female Male

10x 3' v3

Nucleus