Homo sapiens

Natural killer cell Cd8-positive, alpha-beta t cell Regulatory t cell Mast cell Leukocyte Monocyte Macrophage Dendritic cell T cell Naive t cell Conventional dendritic cell Plasma cell Plasmacytoid dendritic cell Innate lymphoid cell Cd4-positive, alpha-beta t cell B cell

Ascending colon Caecum epithelium Cecum mucosa Colon Colonic epithelium Descending colon Lamina propria of mucosa of colon Mucosa of sigmoid colon Mucosa of transverse colon Sigmoid colon

Fifth decade stage Adult stage Eighth decade stage Fourth decade stage Seventh decade stage Sixth decade stage Third decade stage

Normal Crohn disease

Female Male

10x 3' v2 10x 3' v3 10x 3' v1

Cell

Homo sapiens

Melanocyte of skin Natural killer cell Schwann cell Endothelial cell of lymphatic vessel Cell of skeletal muscle Regulatory t cell Cd8-positive, alpha-beta memory t cell, cd45ro-positive Mast cell Fibroblast Helper t cell Monocyte Pericyte Endothelial cell of vascular tree Macrophage Dendritic cell Cytotoxic t cell Conventional dendritic cell Basal cell of epidermis Plasma cell Plasmacytoid dendritic cell Innate lymphoid cell Chondrocyte Suprabasal keratinocyte Smooth muscle cell Basal cell

Arm skin Nose skin Skin of abdomen Skin of cheek Skin of external ear Skin of forehead Skin of temple

85-year-old stage 80-year-old stage 91-year-old stage 63-year-old stage 24-year-old stage 73-year-old stage 86-year-old stage 59-year-old stage 54-year-old stage 25-year-old stage 66-year-old stage 53-year-old stage 56-year-old stage 77-year-old stage 78-year-old stage 70-year-old stage 81-year-old stage 69-year-old stage 90-year-old stage 62-year-old stage 39-year-old stage 23-year-old stage 27-year-old stage 51-year-old stage

Normal Basal cell carcinoma

Female Male

10x 3' v2 10x 3' v3 10x 3' v1

Cell

Homo sapiens

Medium spiny neuron

Brodmann (1909) area 13 Brodmann (1909) area 24 Brodmann (1909) area 25 Brodmann (1909) area 38 Accessory basal amygdaloid nucleus Agranular insular cortex Anterior cortical amygdaloid nucleus Anterior nuclear group Anterior olfactory nucleus Basolateral amygdaloid nuclear complex Bed nucleus of stria terminalis Body of caudate nucleus Central amygdaloid nucleus Cerebellar nuclear complex Claustrum of brain Corticomedial nuclear complex Dentate gyrus of hippocampal formation Globus pallidus Granular insular cortex Gray matter of midbrain Hippocampal field Hypothalamus Lateral amygdaloid nucleus Lateral geniculate body Lateral nuclear group of thalamus Lateral posterior nucleus of thalamus Mammillary body Medial entorhinal cortex Middle temporal gyrus Nucleus accumbens Perirhinal cortex Piriform cortex Preoptic area Pretectal region Primary auditory cortex Primary motor cortex Pulvinar nucleus Putamen Septal nuclear complex Substantia innominata Substantia nigra Superior temporal gyrus Supraoptic nucleus Uncal ca1 Ventral anterior nucleus of thalamus

50-year-old stage 29-year-old stage 42-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Callithrix jacchus

Oligodendrocyte L5/6 near-projecting glutamatergic neuron of the primary motor cortex L6b glutamatergic cortical neuron Pericyte Vascular leptomeningeal cell Sst gabaergic interneuron Inhibitory interneuron L2/3 intratelencephalic projecting glutamatergic neuron Macrophage T cell Lamp5 gabaergic interneuron Pvalb gabaergic interneuron L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex L6 corticothalamic-projecting glutamatergic cortical neuron Myeloid cell Erythroid lineage cell Oligodendrocyte precursor cell Microglial cell Endothelial cell Smooth muscle cell Pvalb chandelier gabaergic interneuron B cell Vip gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron Astrocyte

Dorsolateral prefrontal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Megakaryocyte Erythrocyte Granulocyte monocyte progenitor cell Fraction a pre-pro b cell Vascular associated smooth muscle cell Promonocyte Common myeloid progenitor Megakaryocyte-erythroid progenitor cell Double negative thymocyte Macrophage Hematopoietic multipotent progenitor cell Promyelocyte Early lymphoid progenitor Hematopoietic stem cell

Bone marrow Gut wall Kidney Liver Mesenteric lymph node Skin of body Spleen Thymus Yolk sac

15th week post-fertilization stage 11th week post-fertilization stage 14th week post-fertilization stage 9th week post-fertilization stage 13th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 12th week post-fertilization stage 10th week post-fertilization stage 17th week post-fertilization stage 16th week post-fertilization stage Carnegie stage 19 Carnegie stage 20 Carnegie stage 13

Normal

Female Male

10x 3' v2 10x 5' v1

Cell

Callithrix jacchus

Astrocyte

Brodmann (1909) area 23 Brodmann (1909) area 25 Amygdala Anterior hypothalamic region Basal forebrain Brainstem Caudate nucleus Central amygdaloid nucleus Cerebellum lobule Dorsal thalamus Dorsolateral prefrontal cortex Hippocampal formation Lateral amygdaloid nucleus Lateral geniculate body Lateral nuclear group of thalamus Medial amygdaloid nucleus Medial dorsal nucleus of thalamus Nucleus accumbens Parietal cortex Posterior hypothalamic region Prefrontal cortex Primary auditory cortex Primary motor cortex Primary somatosensory cortex Primary visual cortex Putamen Secondary visual cortex Temporal cortex Temporal lobe Thalamic complex Ventral lateral nucleus of thalamus Ventral thalamus

Prime adult stage Late adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Natural killer cell Cd16-negative, cd56-bright natural killer cell, human Innate lymphoid cell Cd16-positive, cd56-dim natural killer cell, human

Blood

64-year-old stage 26-year-old stage 65-year-old stage 35-year-old stage 63-year-old stage 29-year-old stage 58-year-old stage 34-year-old stage 31-year-old stage 59-year-old stage 25-year-old stage 12-year-old stage 61-year-old stage 57-year-old stage 11-year-old stage 56-year-old stage 55-year-old stage 36-year-old stage 32-year-old stage 60-year-old stage 62-year-old stage 28-year-old stage 30-year-old stage 27-year-old stage 33-year-old stage

Normal Cytomegalovirus infection

Female Male

10x 3' v3

Cell

Homo sapiens

Oligodendrocyte L6b glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Vascular leptomeningeal cell Sst gabaergic interneuron Cerebral cortex endothelial cell Lamp5 gabaergic interneuron Pvalb gabaergic interneuron Oligodendrocyte precursor cell Sncg gabaergic interneuron Microglial cell Caudal ganglionic eminence derived interneuron Corticothalamic-projecting glutamatergic cortical neuron Astrocyte of the cerebral cortex L2/3-6 intratelencephalic projecting glutamatergic neuron Pvalb chandelier gabaergic interneuron Vip gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron

Middle temporal gyrus

50-year-old stage 43-year-old stage 29-year-old stage 42-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Pericyte Vascular leptomeningeal cell Perivascular macrophage Ependymal cell Lymphocyte Oligodendrocyte precursor cell Microglial cell Brain microvascular endothelial cell Neuron Smooth muscle cell of the brain vasculature Astrocyte

Normal Prion disease

10x 3' transcription profiling

Mus musculus

Type 5 cone bipolar cell (sensu mus) Type 9 cone bipolar cell (sensu mus) Rod bipolar cell Type 1 cone bipolar cell (sensu mus) Type 6 cone bipolar cell (sensu mus) Type 4 cone bipolar cell (sensu mus) Type 2 cone bipolar cell (sensu mus) Type 7 cone bipolar cell (sensu mus) Type 3a cone bipolar cell Type 8 cone bipolar cell (sensu mus) Type 5a cone bipolar cell Type 5b cone bipolar cell Type 3b cone bipolar cell

Normal

10x 3' v2 10x 3' v3 Drop-seq

Mus musculus

Type 5 cone bipolar cell (sensu mus) Type 9 cone bipolar cell (sensu mus) Rod bipolar cell Type 1 cone bipolar cell (sensu mus) Type 6 cone bipolar cell (sensu mus) Type 4 cone bipolar cell (sensu mus) Type 2 cone bipolar cell (sensu mus) Type 7 cone bipolar cell (sensu mus) Type 3a cone bipolar cell Type 8 cone bipolar cell (sensu mus) Type 5a cone bipolar cell Type 5b cone bipolar cell Type 3b cone bipolar cell

Retina

25-week-old stage 12-week-old stage 8-week-old stage 9-week-old stage 4-month-old stage 2-week-old stage 7-week-old stage 11-week-old stage 5-week-old stage

Normal

Male

10x 3' v2 10x 3' v3 Drop-seq

Cell

Homo sapiens

Schwann cell Keratocyte Endothelial cell of lymphatic vessel Fibroblast Corneal endothelial cell Progenitor cell Pericyte Myeloid leukocyte Myelinating schwann cell Conjunctiva goblet cell Epithelial cell Lymphocyte Blood vessel endothelial cell Conjunctival epithelial cell Endothelial cell Smooth muscle cell Melanocyte

Cornea Corneo-scleral junction Sclera

50-year-old stage 65-year-old stage 58-year-old stage 24-year-old stage 66-year-old stage 57-year-old stage 83-year-old stage 46-year-old stage 44-year-old stage 47-year-old stage 70-year-old stage 69-year-old stage 60-year-old stage 62-year-old stage 30-year-old stage 72-year-old stage 71-year-old stage 33-year-old stage

Normal

Female Male

10x 3' v3

Nucleus