Callithrix jacchus

L6b glutamatergic cortical neuron Myeloid cell Astrocyte Lamp5 gabaergic interneuron Inhibitory interneuron Pvalb chandelier gabaergic interneuron Smooth muscle cell L2/3 intratelencephalic projecting glutamatergic neuron Vip gabaergic interneuron Oligodendrocyte precursor cell Oligodendrocyte B cell L6 corticothalamic-projecting glutamatergic cortical neuron Pericyte Erythroid lineage cell L5/6 near-projecting glutamatergic neuron of the primary motor cortex Pvalb gabaergic interneuron Macrophage Sst gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron L6 intratelencephalic projecting glutamatergic neuron of the primary motor cortex Vascular leptomeningeal cell Microglial cell T cell Endothelial cell

Dorsolateral prefrontal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Double negative thymocyte Common myeloid progenitor Hematopoietic multipotent progenitor cell Early lymphoid progenitor Fraction a pre-pro b cell Megakaryocyte Vascular associated smooth muscle cell Hematopoietic stem cell Promonocyte Megakaryocyte-erythroid progenitor cell Granulocyte monocyte progenitor cell Macrophage Erythrocyte Promyelocyte

Skin of body Mesenteric lymph node Liver Gut wall Bone marrow Kidney Spleen Yolk sac Thymus

Carnegie stage 19 Carnegie stage 20 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 23 16th week post-fertilization stage Carnegie stage 22 Carnegie stage 13 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell

Callithrix jacchus

Astrocyte

Primary motor cortex Anterior hypothalamic region Primary visual cortex Nucleus accumbens Dorsolateral prefrontal cortex Primary somatosensory cortex Lateral nuclear group of thalamus Medial dorsal nucleus of thalamus Putamen Lateral geniculate body Brodmann (1909) area 25 Posterior hypothalamic region Ventral lateral nucleus of thalamus Amygdala Temporal cortex Basal forebrain Temporal lobe Ventral thalamus Secondary visual cortex Dorsal thalamus Brainstem Primary auditory cortex Medial amygdaloid nucleus Hippocampal formation Brodmann (1909) area 23 Lateral amygdaloid nucleus Prefrontal cortex Parietal cortex Central amygdaloid nucleus Caudate nucleus Thalamic complex Cerebellum lobule

Prime adult stage Late adult stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Innate lymphoid cell Cd16-positive, cd56-dim natural killer cell, human Cd16-negative, cd56-bright natural killer cell, human Natural killer cell

Blood

35-year-old stage 62-year-old stage 27-year-old stage 26-year-old stage 61-year-old stage 57-year-old stage 36-year-old stage 12-year-old stage 59-year-old stage 30-year-old stage 55-year-old stage 58-year-old stage 64-year-old stage 29-year-old stage 11-year-old stage 33-year-old stage 32-year-old stage 28-year-old stage 31-year-old stage 63-year-old stage 60-year-old stage 25-year-old stage 56-year-old stage 65-year-old stage 34-year-old stage

Cytomegalovirus infection Normal

Female Male

10x 3' v3

Cell

Homo sapiens

L6b glutamatergic cortical neuron Lamp5 gabaergic interneuron Astrocyte of the cerebral cortex Corticothalamic-projecting glutamatergic cortical neuron Pvalb chandelier gabaergic interneuron Vip gabaergic interneuron Oligodendrocyte precursor cell Caudal ganglionic eminence derived interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron Oligodendrocyte Cerebral cortex endothelial cell Pvalb gabaergic interneuron Sncg gabaergic interneuron Sst gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Vascular leptomeningeal cell Microglial cell

Middle temporal gyrus

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage 43-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Astrocyte Brain microvascular endothelial cell Oligodendrocyte precursor cell Pericyte Smooth muscle cell of the brain vasculature Lymphocyte Ependymal cell Perivascular macrophage Vascular leptomeningeal cell Microglial cell Neuron

Prion disease Normal

10x 3' transcription profiling

Mus musculus

Type 2 cone bipolar cell (sensu mus) Type 1 cone bipolar cell (sensu mus) Type 5b cone bipolar cell Type 4 cone bipolar cell (sensu mus) Type 9 cone bipolar cell (sensu mus) Type 7 cone bipolar cell (sensu mus) Type 5a cone bipolar cell Type 3b cone bipolar cell Type 6 cone bipolar cell (sensu mus) Type 8 cone bipolar cell (sensu mus) Rod bipolar cell Type 5 cone bipolar cell (sensu mus) Type 3a cone bipolar cell

Retina

12-week-old stage 11-week-old stage 8-week-old stage 5-week-old stage 7-week-old stage 9-week-old stage 4-month-old stage 2-week-old stage 25-week-old stage

Normal

Male

10x 3' v3 Drop-seq 10x 3' v2

Cell

Mus musculus

Type 2 cone bipolar cell (sensu mus) Type 1 cone bipolar cell (sensu mus) Type 5b cone bipolar cell Type 4 cone bipolar cell (sensu mus) Type 9 cone bipolar cell (sensu mus) Type 7 cone bipolar cell (sensu mus) Type 5a cone bipolar cell Type 3b cone bipolar cell Type 6 cone bipolar cell (sensu mus) Type 8 cone bipolar cell (sensu mus) Rod bipolar cell Type 5 cone bipolar cell (sensu mus) Type 3a cone bipolar cell

Normal

10x 3' v3 Drop-seq 10x 3' v2

Homo sapiens

Fibroblast Schwann cell Keratocyte Myelinating schwann cell Smooth muscle cell Melanocyte Epithelial cell Conjunctival epithelial cell Blood vessel endothelial cell Myeloid leukocyte Pericyte Lymphocyte Progenitor cell Endothelial cell of lymphatic vessel Conjunctiva goblet cell Corneal endothelial cell Endothelial cell

Cornea Sclera Corneo-scleral junction

62-year-old stage 72-year-old stage 83-year-old stage 57-year-old stage 70-year-old stage 30-year-old stage 58-year-old stage 50-year-old stage 66-year-old stage 33-year-old stage 69-year-old stage 60-year-old stage 46-year-old stage 24-year-old stage 65-year-old stage 71-year-old stage 44-year-old stage 47-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fibroblast Mast cell Neutrophil Epithelial cell Plasma cell Dendritic cell B cell Macrophage Erythrocyte T cell Endothelial cell

Adrenal gland Lung Pleural effusion Liver Brain Bone spine Axilla Lymph node

62-year-old stage 78-year-old stage 73-year-old stage 74-year-old stage 72-year-old stage 85-year-old stage 81-year-old stage 57-year-old stage 82-year-old stage 70-year-old stage 55-year-old stage 75-year-old stage 79-year-old stage 64-year-old stage 68-year-old stage 77-year-old stage 69-year-old stage 76-year-old stage 80-year-old stage 84-year-old stage 67-year-old stage 65-year-old stage 71-year-old stage 44-year-old stage 47-year-old stage

Normal Lung adenocarcinoma Small cell lung carcinoma

Female Male

10x 3' transcription profiling 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Cultured cell

K-562

Normal

Sci-plex

Nucleus

Homo sapiens

Iga plasma cell Fibroblast Enteroendocrine cell Memory t cell Mast cell Enterocyte Igg plasma cell Vein endothelial cell Type g enteroendocrine cell Memory b cell Dendritic cell Gamma-delta t cell Capillary endothelial cell Glandular cell of esophagus Natural t-regulatory cell Intestine goblet cell Cd4-positive helper t cell Activated cd8-positive, alpha-beta t cell P/d1 enteroendocrine cell Mucous neck cell of gastric gland Natural killer cell Macrophage Foveolar cell of stomach Epithelial cell of esophagus Erythrocyte Monocyte Parietal cell Peptic cell Stem cell Endothelial cell of artery

Ileum Submucosal esophageal gland Body of stomach Rectum Cardia of stomach Esophagogastric junction Duodenum Lower esophagus Colon

54-year-old stage 62-year-old stage 27-year-old stage 80 year-old and over stage 74-year-old stage 53-year-old stage 83-year-old stage 57-year-old stage 42-year-old stage 48-year-old stage 45-year-old stage 41-year-old stage 55-year-old stage 58-year-old stage 50-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 63-year-old stage 60-year-old stage 56-year-old stage 67-year-old stage 43-year-old stage 34-year-old stage

Barrett esophagus Gastric intestinal metaplasia Gastritis Normal

Female Male

10x 3' v3 10x 3' v2

Cell