Homo sapiens

Glioblast Oligodendrocyte

Midbrain Midbrain tectum Striatum Cortex Hypothalamus Cerebral subcortex Metencephalon Basal forebrain Brain Forebrain Pons Cerebellum Entorhinal cortex Telencephalon Hippocampal formation Occipital cortex Diencephalon Upper layers of the cortex Hindbrain Caudate-putamen Lower layers of the cortex Cerebellar peduncular complex Frontal cortex Medulla oblongata Dorsal plus ventral thalamus

Carnegie stage 20 Carnegie stage 18 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 15 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Danio rerio

Slow muscle cell Fast muscle myoblast Slow muscle myoblast Fast muscle cell

Fast muscle tissue Slow muscle tissue Pharyngeal arch Multicellular anatomical structure

Hatching:pec-fin Larval:protruding-mouth Pharyngula:prim-15 Pharyngula:prim-25 Segmentation:14-19 somites Pharyngula:high-pec Segmentation:26+ somites Hatching:long-pec Segmentation:20-25 somites Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Neuron

Intralaminar nuclear group Primary motor cortex Cerebellar nuclear complex Dentate gyrus of hippocampal formation Cerebrocerebellum Globus pallidus Midbrain tectum Lateral nuclear group of thalamus Epithalamus Retrosplenial region Medial dorsal nucleus of thalamus Medial zone of hypothalamus Lateral geniculate body Nucleus of medulla oblongata Red nucleus Corticomedial nuclear complex Pontine reticular formation Brodmann (1909) area 19 Midbrain nucleus Pontine tegmentum Hypothalamus Substantia nigra Cerebellar vermis Lateral entorhinal cortex Septal nuclear complex Basolateral amygdaloid nuclear complex Spinal cord Middle temporal gyrus Parabrachial nucleus Brodmann (1909) area 38 Pulvinar nucleus Body of caudate nucleus Temporal fusiform gyrus Medial entorhinal cortex Posterior parahippocampal gyrus Pontine nuclear group Dorsal tegmental nucleus Substantia innominata Bed nucleus of stria terminalis Medial geniculate body Inferior olivary complex Gray matter of midbrain Mammillary body Anterior nuclear group Central amygdaloid nucleus Hippocampal field Pretectal region Lateral posterior nucleus of thalamus

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Myeloid cell Cd4-positive, alpha-beta cytotoxic t cell Exhausted t cell Malignant cell Follicular dendritic cell Plasma cell B cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Erythrocyte Mature nk t cell Cd4-positive, alpha-beta t cell T cell T follicular helper cell

Lymph node

Follicular lymphoma Normal

10x 5' v1

Cell

Macaca mulatta

Astrocyte

Primary motor cortex Perirhinal cortex Inferior temporal gyrus Midbrain Cerebrocerebellum Primary visual cortex Nucleus accumbens Dorsolateral prefrontal cortex Primary somatosensory cortex Medial dorsal nucleus of thalamus Lateral geniculate body Ventral lateral nucleus of thalamus Amygdala Brodmann (1909) area 19 Inferior parietal cortex Primary auditory cortex Cerebellar vermis Pons Entorhinal cortex Hippocampal formation Anterior cingulate cortex Prefrontal cortex Superior parietal cortex Superior temporal sulcus Corpus callosum Medulla oblongata Head of caudate nucleus

Prime adult stage Juvenile stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Fibroblast Astrocyte Oligodendrocyte precursor cell Oligodendrocyte B cell Neoplastic cell Vascular associated smooth muscle cell Pericyte Lymphocyte Macrophage Monocyte Microglial cell Endothelial cell

Right temporal lobe

73-year-old stage

Glioblastoma

Male

10x 3' v3

Cell

Homo sapiens

L6b glutamatergic cortical neuron Lamp5 gabaergic interneuron Astrocyte of the cerebral cortex Corticothalamic-projecting glutamatergic cortical neuron Pvalb chandelier gabaergic interneuron Vip gabaergic interneuron Oligodendrocyte precursor cell Caudal ganglionic eminence derived interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron Oligodendrocyte Cerebral cortex endothelial cell Pvalb gabaergic interneuron Sncg gabaergic interneuron Sst gabaergic interneuron L5 extratelencephalic projecting glutamatergic cortical neuron Near-projecting glutamatergic cortical neuron Vascular leptomeningeal cell Microglial cell

Anterior cingulate cortex

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage 43-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Fibroblast Innate lymphoid cell Kupffer cell Multi fate stem cell Common myeloid progenitor Hematopoietic multipotent progenitor cell Mast cell Fraction a pre-pro b cell Pro-b cell Common dendritic progenitor Mononuclear phagocyte B cell Megakaryocyte Hepatocyte Precursor b cell Plasmacytoid dendritic cell Erythroid lineage cell Megakaryocyte-erythroid progenitor cell Granulocyte monocyte progenitor cell Natural killer cell Macrophage Pro-t cell Conventional dendritic cell Monocyte Neutrophilic myeloblast Stem cell Endothelial cell Common lymphoid progenitor

Liver Yolk sac Zone of skin Metanephros

14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 Carnegie stage 14 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 18th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Male Female

10x genomics v2

Homo sapiens

Myeloid cell Mast cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Plasma cell B cell Naive thymus-derived cd4-positive, alpha-beta t cell Plasmacytoid dendritic cell, human Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Conventional dendritic cell Monocyte Cycling t cell T follicular helper cell

Mandible Gingiva of lower jaw Tongue Larynx Alveolar ridge of mandible Oral cavity Oropharynx Buccal mucosa Hypopharynx Mouth floor

54-year-old stage 35-year-old stage 62-year-old stage 73-year-old stage 74-year-old stage 72-year-old stage 53-year-old stage 61-year-old stage 57-year-old stage 48-year-old stage 70-year-old stage 45-year-old stage 55-year-old stage 58-year-old stage 75-year-old stage 18-year-old stage 50-year-old stage 51-year-old stage 64-year-old stage 66-year-old stage 77-year-old stage 69-year-old stage 32-year-old stage 60-year-old stage 80-year-old stage 56-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage

Head and neck squamous cell carcinoma

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v2

Cell

Homo sapiens

Lung pericyte Mast cell Smooth muscle cell Neutrophil Stromal cell Plasma cell B cell Gamma-delta t cell Regulatory t cell Fibroblast of lung Pulmonary capillary endothelial cell Club cell Non-classical monocyte Pulmonary alveolar type 2 cell Lung goblet cell Leukocyte Cd8-positive, alpha-beta t cell Lung macrophage Natural killer cell Lung endothelial cell Platelet Erythrocyte Mature nk t cell Basal cell Classical monocyte Mesothelial cell Cd4-positive, alpha-beta t cell Lung multiciliated epithelial cell

Upper lobe of left lung

36-year-old stage

Covid-19

Male

10x 3' v3

Cell

Homo sapiens

Sertoli cell Mural cell Hematopoietic cell Epithelial cell Mesenchymal cell Leydig cell Germ cell Supporting cell Neural cell Erythrocyte Mesothelial cell Endothelial cell

Gonad

Carnegie stage 19 21st week post-fertilization stage 14th week post-fertilization stage 16th week post-fertilization stage 19th week post-fertilization stage 15th week post-fertilization stage 11th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 17 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Male

10x 5' v2 10x 5' v1

Cell

Homo sapiens

Myeloid cell Effector memory cd8-positive, alpha-beta t cell Exhausted t cell Regulatory t cell T-helper 17 cell Activated cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Cd8-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta t cell Cd4-positive, alpha-beta memory t cell, cd45ro-positive

T cell

54-year-old stage 74-year-old stage 61-year-old stage 57-year-old stage 42-year-old stage 52-year-old stage 48-year-old stage 70-year-old stage 38-year-old stage 59-year-old stage 58-year-old stage 64-year-old stage 68-year-old stage 66-year-old stage 28-year-old stage 63-year-old stage 60-year-old stage 24-year-old stage 44-year-old stage

B-cell non-hodgkin lymphoma

Female Male

10x 5' v1

Cell