Mus musculus

Mast cell Neutrophil Dendritic cell B cell Macrophage Monocyte Mature nk t cell T cell

Periovarian fat pad Epididymal fat pad Inguinal fat pad

19-week-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Lung secretory cell Epithelial cell of lung Club cell Respiratory tract epithelial cell Pulmonary alveolar type 2 cell Pulmonary alveolar type 1 cell Neuroendocrine cell Basal cell Pulmonary neuroendocrine cell

Lung

Carnegie stage 19 20th week post-fertilization stage 15th week post-fertilization stage 11th week post-fertilization stage 22nd week post-fertilization stage 18th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

Female Male

10x 5' v1

Cell

Homo sapiens

Fibroblast Innate lymphoid cell Intermediate monocyte Myeloid dendritic cell Hematopoietic precursor cell Basophil Neutrophil Plasma cell B cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Hematopoietic stem cell Non-classical monocyte Plasmacytoid dendritic cell Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Platelet Erythrocyte Monocyte Mature nk t cell Classical monocyte Cd4-positive, alpha-beta t cell T cell Endothelial cell

Spleen

61-year-old stage 45-year-old stage 59-year-old stage 69-year-old stage 60-year-old stage 56-year-old stage

Normal

Female Male

10x 3' v3 10x 5' v2 Smart-seq2

Cell

Homo sapiens

Fibroblast Innate lymphoid cell Placental villous trophoblast Cd16-positive, cd56-dim natural killer cell, human Decidual cell Granulocyte Plasma cell Decidual natural killer cell, human Pericyte Hofbauer cell Glandular secretory epithelial cell Cd16-negative, cd56-bright natural killer cell, human Macrophage Extravillous trophoblast Conventional dendritic cell Monocyte Syncytiotrophoblast cell T cell Endothelial cell

Placenta Blood Decidua

Carnegie stage 18 10th week post-fertilization stage Carnegie stage 23 Carnegie stage 22 Carnegie stage 14

Normal

Female Male

Smart-seq2 10x 3' v2

Cell

Homo sapiens

Enteroendocrine cell Enterocyte Type x enteroendocrine cell Type ec enteroendocrine cell Type g enteroendocrine cell Epithelial cell Intestine goblet cell Mucous neck cell of gastric gland Foveolar cell of stomach Best4+ enterocyte Parietal cell Peptic cell

Stomach Pyloric antrum Body of stomach Pylorus

54-year-old stage 62-year-old stage 72-year-old stage 61-year-old stage 57-year-old stage 48-year-old stage 70-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage 55-year-old stage 58-year-old stage 75-year-old stage 51-year-old stage 66-year-old stage 15th week post-fertilization stage 69-year-old stage 76-year-old stage 31-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage 56-year-old stage 46-year-old stage 43-year-old stage 65-year-old stage 17th week post-fertilization stage Seventh decade stage 44-year-old stage Carnegie stage 16

Gastric cancer Normal

Female Male

10x 5' transcription profiling 10x 5' v2 10x 3' v2

Cell

Homo sapiens

Astrocyte of the cerebral cortex

Middle temporal gyrus

Adult stage 78-year-old stage 80 year-old and over stage 72-year-old stage 83-year-old stage 85-year-old stage 81-year-old stage 82-year-old stage 86-year-old stage 70-year-old stage 75-year-old stage 50-year-old stage 89-year-old stage 68-year-old stage 29-year-old stage 77-year-old stage 69-year-old stage 88-year-old stage 87-year-old stage 60-year-old stage 80-year-old stage 84-year-old stage 65-year-old stage

Dementia Normal

Female Male

10x multiome 10x 3' v3

Nucleus

Mus musculus

Sertoli cell Mural cell Hematopoietic cell Epithelial cell Granulosa cell Mesenchymal cell Leydig cell Ovarian surface epithelial cell Germ cell Supporting cell Neural cell Skeletal muscle fiber Erythrocyte Interstitial cell of ovary Mesothelial cell Endothelial cell

Mesonephros Gonad

Theiler stage 26 5-day-old stage Theiler stage 24 Theiler stage 20 Theiler stage 22 Theiler stage 21 Theiler stage 27 Theiler stage 19

Normal

Female

10x 3' v3 10x 5' v1 10x 3' v2

Cell

Homo sapiens

Pancreatic d cell Pancreatic ductal cell Pp cell Pancreatic a cell Pancreatic acinar cell Pancreatic epsilon cell Type b pancreatic cell Pancreatic stellate cell Endothelial cell

Islet of langerhans

35-year-old stage 39-year-old stage 27-year-old stage 21-year-old stage 13-year-old stage 17-year-old stage 1-year-old stage 4-year-old stage 3-year-old stage 10-year-old stage 23-year-old stage 14-year-old stage 22-year-old stage 15-year-old stage 18-year-old stage 29-year-old stage 5-year-old stage 8-year-old stage 24-year-old stage

Type 1 diabetes mellitus Normal

Female Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Retinal pigment epithelial cell

Chorioretinal region

62-year-old stage 27-year-old stage 72-year-old stage 53-year-old stage 21-year-old stage 81-year-old stage Newborn stage (0-28 days) 82-year-old stage 86-year-old stage 30-year-old stage 10-year-old stage 58-year-old stage 90 year-old and over stage 50-year-old stage 64-year-old stage 68-year-old stage 77-year-old stage 11-year-old stage 69-year-old stage 32-year-old stage 63-year-old stage 60-year-old stage 25-year-old stage 46-year-old stage 43-year-old stage 65-year-old stage 71-year-old stage 34-year-old stage 16-year-old stage 47-year-old stage

Normal

Female Male

10x 3' v3 10x 5' v2

Nucleus

Homo sapiens

Astrocyte Glial cell Inhibitory interneuron Oligodendrocyte precursor cell Purkinje cell Brainstem motor neuron Bergmann glial cell Pericyte Granule cell Interneuron Ependymal cell Cerebellar granule cell precursor Gabaergic interneuron Meningeal macrophage Microglial cell Choroid plexus epithelial cell Endothelial cell

Cerebellum

21st week post-fertilization stage 14th week post-fertilization stage 10th week post-fertilization stage 20th week post-fertilization stage 11th week post-fertilization stage 12th week post-fertilization stage 18th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

Split-seq

Cell Nucleus

Homo sapiens

Kupffer cell Cycling myeloid cell Cholangiocyte Neutrophil Mononuclear phagocyte Plasma cell Gamma-delta t cell Hepatocyte Hematopoietic stem cell Cycling plasma cell Natural killer cell Endothelial cell of hepatic sinusoid Macrophage Mature b cell Platelet Erythrocyte Conventional dendritic cell T cell

Right lobe of liver Caudate lobe of liver

26-year-old stage 57-year-old stage Juvenile stage (5-14 yo) 15-19 year-old Late adult stage 69-year-old stage Child stage (1-4 yo) Young adult stage Prime adult stage

Normal

Female Male

10x 3' v3 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Callithrix jacchus

Astrocyte

Primary motor cortex Primary visual cortex Dorsolateral prefrontal cortex Primary somatosensory cortex Temporal cortex Temporal lobe Secondary visual cortex Primary auditory cortex Brodmann (1909) area 23 Prefrontal cortex Parietal cortex

Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus