Mus musculus

Fibroblast Seminal vesicle glandular cell Smooth muscle cell of prostate Luminal cell of prostate epithelium Intermediate monocyte Neutrophil Cd141-positive myeloid dendritic cell Plasma cell Dendritic cell B cell Regulatory t cell Prostate gland microvascular endothelial cell Cd1c-positive myeloid dendritic cell Urethra urothelial cell Fibroblast of connective tissue of prostate Non-classical monocyte Plasmacytoid dendritic cell Lymphocyte Basal cell of prostate epithelium Effector cd8-positive, alpha-beta t cell Effector cd4-positive, alpha-beta t cell Natural killer cell Mature nk t cell Classical monocyte T cell Tissue-resident macrophage

Prostate gland Urethra

2-month-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Astrocyte Inhibitory interneuron Oligodendrocyte precursor cell Oligodendrocyte Glutamatergic neuron Vascular leptomeningeal cell Microglial cell Endothelial cell

White matter of frontal lobe White matter of temporal lobe White matter of parietal lobe Prefrontal cortex White matter of occipital lobe

72-year-old stage 53-year-old stage 83-year-old stage 81-year-old stage 82-year-old stage 70-year-old stage 68-year-old stage 76-year-old stage

Leukoencephalopathy, diffuse hereditary, with spheroids 1 Normal Alzheimer disease

Female Male

10x 3' v3

Nucleus

Homo sapiens

Astrocyte Lamp5 gabaergic interneuron Committed oligodendrocyte precursor L2/3 intratelencephalic projecting glutamatergic neuron Vip gabaergic interneuron Oligodendrocyte precursor cell Oligodendrocyte Pvalb gabaergic interneuron Glutamatergic neuron Cerebral cortex gabaergic interneuron Sst gabaergic interneuron Vascular leptomeningeal cell Microglial cell Endothelial cell

Parietal lobe Temporal lobe Lobe of cerebral hemisphere Frontal lobe

12-year-old stage 3-year-old stage 2-year-old stage 15-year-old stage 18-year-old stage 50-year-old stage 32-year-old stage 31-year-old stage

Isolated focal cortical dysplasia type ii

Female Male

10x multiome

Nucleus

Homo sapiens

Fibroblast Innate lymphoid cell Mesothelial cell of epicardium Myeloid cell Vein endothelial cell Fetal cardiomyocyte Endocardial cell Smooth muscle cell Cardiac muscle cell Cardiac mesenchymal cell Capillary endothelial cell Pericyte Adipocyte Neuron Endothelial cell Endothelial cell of artery

Heart left ventricle Basal zone of heart Apex of heart Left cardiac atrium Interventricular septum Right cardiac atrium Heart right ventricle

10th week post-fertilization stage Sixth decade stage Embryonic stage Eighth decade stage Seventh decade stage

Normal

Female Male

10x 3' v3 10x 3' v2

Cell Nucleus

Homo sapiens

Secretory cell Mast cell Smooth muscle cell Stromal cell B cell Pericyte Endothelial cell of lymphatic vessel Natural killer cell Macrophage Ciliated epithelial cell Endothelial cell

Fimbria of fallopian tube Isthmus of fallopian tube Ampulla of fallopian tube

62-year-old stage 72-year-old stage 61-year-old stage 70-year-old stage 55-year-old stage 65-year-old stage

Normal

Female

10x 3' v3 Drop-seq

Cell

Mus musculus

Mesenchymal cell Chondrocyte Blood cell Neural cell Osteoblast Ectodermal cell

Pharyngeal arch system

Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 21 Theiler stage 17 Theiler stage 19

Normal

10x multiome 10x 3' v3

Nucleus

Homo sapiens

Vein endothelial cell Capillary endothelial cell Endothelial cell of lymphatic vessel Endothelial cell Endothelial cell of artery

Ileum lamina propria Ileal epithelium Epithelium of esophagus Stomach Ascending colon Sigmoid colon Transverse colon Pyloric antrum Caecum Colonic epithelium Colonic mucosa Mesenteric lymph node Ileum Vermiform appendix Descending colon Rectosigmoid junction Small intestine Periodontium Body of stomach Intestine Buccal mucosa Esophagus Jejunum Rectum Labial gland Duodenum Pylorus Gingiva Parotid gland Colon

54-year-old stage 35-year-old stage Adult stage 39-year-old stage 62-year-old stage Carnegie stage 19 26-year-old stage 72-year-old stage 9-year-old stage Third decade stage Carnegie stage 18 10th week post-fertilization stage 21-year-old stage 85-year-old stage 81-year-old stage 61-year-old stage 57-year-old stage Juvenile stage (5-14 yo) 13-year-old stage Sixth decade stage Newborn stage (0-28 days) Embryonic stage 4-year-old stage 16th week post-fertilization stage Fourth decade stage 52-year-old stage 86-year-old stage 48-year-old stage Carnegie stage 22 19th week post-fertilization stage 70-year-old stage 6-year-old stage 12-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 2-month-old stage 55-year-old stage 23-year-old stage 58-year-old stage 14-year-old stage 75-year-old stage 22-year-old stage 50-year-old stage 51-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 15th week post-fertilization stage 77-year-old stage 11-year-old stage 11th week post-fertilization stage 13th week post-fertilization stage 33-year-old stage 69-year-old stage 32-year-old stage 12th week post-fertilization stage 28-year-old stage 76-year-old stage Young adult stage Fifth decade stage 31-year-old stage Carnegie stage 17 87-year-old stage 60-year-old stage 80-year-old stage Prime adult stage 18th week post-fertilization stage 84-year-old stage 56-year-old stage 37-year-old stage Pediatric stage 9th week post-fertilization stage 46-year-old stage 24-year-old stage 67-year-old stage 65-year-old stage 17th week post-fertilization stage Seventh decade stage 44-year-old stage 34-year-old stage Carnegie stage 16

Crohn disease Inflammatory bowel disease Colorectal cancer Gastric cancer Normal Ulcerative colitis

Female Male

10x 5' transcription profiling 10x 3' v3 10x 3' v1 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Mus musculus

Granulocyte Epithelial cell Enteroglial cell Stromal cell Mononuclear phagocyte Plasma cell Colon endothelial cell B cell Myofibroblast cell Lymph node lymphatic vessel endothelial cell T cell

Normal

10x 3' v3

Homo sapiens

Secretory cell Fibroblast Mast cell Smooth muscle cell B cell Blood vessel endothelial cell Pericyte Myofibroblast cell Endothelial cell of lymphatic vessel Macrophage Ciliated epithelial cell Mature nk t cell

Fimbria of fallopian tube Isthmus of fallopian tube Ampulla of fallopian tube Fallopian tube

52-year-old stage 30-year-old stage 31-year-old stage 46-year-old stage

Normal

Female

10x 3' v3

Cell

Homo sapiens

Endothelial cell of umbilical vein

Endothelial cell

Newborn stage (0-28 days)

Normal

10x 3' v2

Cell

Homo sapiens

Intermediate monocyte Igg memory b cell Dendritic cell Igg-negative class switched memory b cell Blood cell Non-classical monocyte Cd4-positive helper t cell Cd8-positive, alpha-beta t cell Effector cd8-positive, alpha-beta t cell Effector cd4-positive, alpha-beta t cell Natural killer cell Platelet Erythrocyte Classical monocyte

Blood

54-year-old stage 62-year-old stage 78-year-old stage 73-year-old stage 61-year-old stage 82-year-old stage 70-year-old stage 38-year-old stage 75-year-old stage 68-year-old stage 63-year-old stage 56-year-old stage 46-year-old stage 67-year-old stage

Covid-19 Influenza Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Plasmablast Alpha-beta t cell Dendritic cell B cell Plasmacytoid dendritic cell Cd8-positive, alpha-beta t cell Natural killer cell Platelet Monocyte Cd4-positive, alpha-beta t cell

Blood

Adult stage 80 year-old and over stage 60-79 year-old stage

Covid-19 Normal

10x 5' v1

Cell