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Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
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Most cells
Fewest cells
2515
datasets
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' transcription profiling
+6
10x 3' transcription profiling
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x 3' transcription profiling
10x 3' v2
10x 3' v3
10x multiome
Smart-seq2
Smart-seq3
Indrop
Suspension type
Nucleus
Cell
Related Links
Jia et al.
Liu et al.
Nguyen et al.
Yang et al.
Renthal et al.
Wang et al.
Avraham et al.
Zhang et al.
Parpaite et al.
Sharma et al.
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' transcription profiling
+6
10x 3' transcription profiling
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x 3' transcription profiling
10x 3' v2
10x 3' v3
10x multiome
Smart-seq2
Smart-seq3
Indrop
Suspension type
Nucleus
Cell
Related Links
Jia et al.
Liu et al.
Nguyen et al.
Yang et al.
Renthal et al.
Wang et al.
Avraham et al.
Zhang et al.
Parpaite et al.
Sharma et al.
CELLxGENE
70,963 cells
•
Techameena et al., 2024
The single-cell transcriptomic atlas iPain identifies senescence of nociceptors as a therapeutical target for chronic pain treatment
Explore
h5ad
Mus musculus
Mus musculus
Sensory neuron of dorsal root ganglion
Sensory neuron of dorsal root ganglion
Dorsal root ganglion
Dorsal root ganglion
15-month-old stage
+1
15-month-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' transcription profiling
+6
10x 3' transcription profiling
Nucleus
+1
Nucleus
Organism
Mus musculus
Cell type
Sensory neuron of dorsal root ganglion
Tissue
Dorsal root ganglion
Developmental stage
15-month-old stage
8-week-old stage
Disease
Normal
Peripheral neuropathy, non-human animal
Sex
Female
Male
Technology
10x 3' transcription profiling
10x 3' v2
10x 3' v3
10x multiome
Smart-seq2
Smart-seq3
Indrop
Suspension type
Nucleus
Cell
Related Links
Jia et al.
Liu et al.
Nguyen et al.
Yang et al.
Renthal et al.
Wang et al.
Avraham et al.
Zhang et al.
Parpaite et al.
Sharma et al.
CELLxGENE
70,803 cells
•
Mannens et al., 2024
Chromatin accessibility during human first-trimester neurodevelopment
Explore
h5ad
Homo sapiens
Homo sapiens
Glioblast
+2
Glioblast
Medulla oblongata
+7
Medulla oblongata
13th week post-fertilization stage
+4
13th week post-fertilization stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glioblast
Oligodendrocyte precursor cell
Radial glial cell
Tissue
Medulla oblongata
Hindbrain
Telencephalon
Midbrain
Cerebellum
Brain
Diencephalon
Pons
Developmental stage
13th week post-fertilization stage
12th week post-fertilization stage
9th week post-fertilization stage
10th week post-fertilization stage
Embryonic stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
EGAS00001007472
Github
CELLxGENE
70,547 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Mus musculus
Mus musculus
T cell
+7
T cell
Periovarian fat pad
+2
Periovarian fat pad
19-week-old stage
19-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
T cell
Neutrophil
Mature nk t cell
Mast cell
Macrophage
B cell
Monocyte
Dendritic cell
Tissue
Periovarian fat pad
Inguinal fat pad
Epididymal fat pad
Developmental stage
19-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
singlecell.broadinstitute.org
gitlab.com
scRNA-seq (GSE176067)
sNuc-seq (GSE176171)
phs002766
CELLxGENE
70,495 cells
•
He et al., 2022
A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates
Explore
h5ad
Homo sapiens
Homo sapiens
Club cell
+8
Club cell
Lung
Lung
Carnegie stage 19
+7
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Club cell
Lung secretory cell
Neuroendocrine cell
Pulmonary neuroendocrine cell
Basal cell
Respiratory tract epithelial cell
Pulmonary alveolar type 1 cell
Epithelial cell of lung
Pulmonary alveolar type 2 cell
Tissue
Lung
Developmental stage
Carnegie stage 19
15th week post-fertilization stage
20th week post-fertilization stage
9th week post-fertilization stage
18th week post-fertilization stage
22nd week post-fertilization stage
Carnegie stage 16
11th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
scRNA / GEX / VDJ (E-MTAB-11278)
Organoid (E-MTAB-11267)
Visium (E-MTAB-11265)
ATAC-seq (E-MTAB-11266)
fetal-lung.cellgeni.sanger.ac.uk
genome.ucsc.edu
github.com
CELLxGENE
70,448 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+25
T cell
Spleen
Spleen
69-year-old stage
+5
69-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+2
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Natural killer cell
Erythrocyte
Endothelial cell
Mature nk t cell
Hematopoietic precursor cell
Cd8-positive, alpha-beta t cell
Platelet
Classical monocyte
Intermediate monocyte
Plasmacytoid dendritic cell
Myeloid dendritic cell
Naive thymus-derived cd8-positive, alpha-beta t cell
Macrophage
Innate lymphoid cell
Regulatory t cell
Hematopoietic stem cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Naive thymus-derived cd4-positive, alpha-beta t cell
Monocyte
Basophil
Fibroblast
Non-classical monocyte
Tissue
Spleen
Developmental stage
69-year-old stage
61-year-old stage
56-year-old stage
59-year-old stage
45-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
Smart-seq2
Suspension type
Cell
Related Links
registry.opendata.aws
Tabula Sapiens Portal
explore.data.humancellatlas.org
cells.ucsc.edu
genome.ucsc.edu
The Tabula Sapiens Consortium et al. (2024) bioRxiv
CELLxGENE
70,325 cells
•
Vento-Tormo et al., 2018
Single-cell reconstruction of the early maternal–fetal interface in humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+18
T cell
Decidua
+2
Decidua
Carnegie stage 14
+4
Carnegie stage 14
Normal
Normal
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Granulocyte
Endothelial cell
Extravillous trophoblast
Decidual natural killer cell, human
Placental villous trophoblast
Macrophage
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Plasma cell
Glandular secretory epithelial cell
Pericyte
Hofbauer cell
Monocyte
Decidual cell
Syncytiotrophoblast cell
Conventional dendritic cell
Fibroblast
Cd16-negative, cd56-bright natural killer cell, human
Tissue
Decidua
Placenta
Blood
Developmental stage
Carnegie stage 14
Carnegie stage 23
10th week post-fertilization stage
Carnegie stage 22
Carnegie stage 18
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Smart-seq2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-6701 (10x)
cells.ucsc.edu
E-MTAB-6678 (Smart-seq2)
explore.data.humancellatlas.org
E-MTAB-7304 (whole-genome sequencing)
genome.ucsc.edu
CellPhoneDB
ebi.ac.uk
ebi.ac.uk
CELLxGENE
70,090 cells
•
Oliver et al., 2024
Single-cell integration reveals metaplasia in inflammatory gut diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Intestine goblet cell
+11
Intestine goblet cell
Stomach
+3
Stomach
66-year-old stage
+29
66-year-old stage
Gastric cancer
+1
Gastric cancer
Female
+1
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Intestine goblet cell
Best4+ enterocyte
Type g enteroendocrine cell
Epithelial cell
Peptic cell
Enteroendocrine cell
Type ec enteroendocrine cell
Parietal cell
Enterocyte
Mucous neck cell of gastric gland
Type x enteroendocrine cell
Foveolar cell of stomach
Tissue
Stomach
Pyloric antrum
Body of stomach
Pylorus
Developmental stage
66-year-old stage
69-year-old stage
75-year-old stage
65-year-old stage
43-year-old stage
61-year-old stage
54-year-old stage
48-year-old stage
44-year-old stage
56-year-old stage
55-year-old stage
15th week post-fertilization stage
80-year-old stage
51-year-old stage
17th week post-fertilization stage
57-year-old stage
72-year-old stage
Seventh decade stage
58-year-old stage
59-year-old stage
45-year-old stage
62-year-old stage
41-year-old stage
70-year-old stage
46-year-old stage
60-year-old stage
31-year-old stage
63-year-old stage
Carnegie stage 16
76-year-old stage
Disease
Gastric cancer
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 5' transcription profiling
10x 5' v2
Suspension type
Cell
Related Links
Teichmann Lab
E-MTAB-14050
CELLxGENE
70,009 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Astrocyte of the cerebral cortex
Astrocyte of the cerebral cortex
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+22
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Astrocyte of the cerebral cortex
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x 3' v3
10x multiome
Suspension type
Nucleus
Related Links
UW Alzheimer's Disease Research Center
Adult Changes in Thought Study
UW BioRepository and Integrated Neuropathology
SEA-AD Homepage
AD Knowledge Portal
DOWNLOAD OFFICIAL DATASET
CELLxGENE
69,709 cells
•
Garcia-Alonso et al., 2022
Single-cell roadmap of human gonadal development
Explore
h5ad
Mus musculus
Mus musculus
Granulosa cell
+15
Granulosa cell
Mesonephros
+1
Mesonephros
Theiler stage 22
+7
Theiler stage 22
Normal
Normal
Female
Female
10x 3' v2
+2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Granulosa cell
Supporting cell
Erythrocyte
Endothelial cell
Sertoli cell
Epithelial cell
Neural cell
Ovarian surface epithelial cell
Interstitial cell of ovary
Mural cell
Mesenchymal cell
Mesothelial cell
Germ cell
Leydig cell
Hematopoietic cell
Skeletal muscle fiber
Tissue
Mesonephros
Gonad
Developmental stage
Theiler stage 22
Theiler stage 27
Theiler stage 24
5-day-old stage
Theiler stage 19
Theiler stage 26
Theiler stage 20
Theiler stage 21
Disease
Normal
Sex
Female
Technology
10x 3' v2
10x 3' v3
10x 5' v1
Suspension type
Cell
Related Links
Human scRNA-seq (E-MTAB-10551)
Mouse scRNA-seq (E-MTAB-11480)
Reproductive Cell Atlas
VenTo Lab
CELLxGENE
69,645 cells
•
Fasolino et al., 2022
Single-cell multi-omics analysis of human pancreatic islets reveals novel cellular states in type 1 diabetes
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+8
Endothelial cell
Islet of langerhans
Islet of langerhans
21-year-old stage
+18
21-year-old stage
Type 1 diabetes mellitus
+1
Type 1 diabetes mellitus
Female
+1
Female
10x 3' v2
+1
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Pancreatic acinar cell
Pp cell
Pancreatic a cell
Pancreatic d cell
Pancreatic stellate cell
Type b pancreatic cell
Pancreatic epsilon cell
Pancreatic ductal cell
Tissue
Islet of langerhans
Developmental stage
21-year-old stage
13-year-old stage
39-year-old stage
17-year-old stage
29-year-old stage
8-year-old stage
15-year-old stage
14-year-old stage
24-year-old stage
23-year-old stage
35-year-old stage
3-year-old stage
18-year-old stage
1-year-old stage
22-year-old stage
5-year-old stage
27-year-old stage
10-year-old stage
4-year-old stage
Disease
Type 1 diabetes mellitus
Normal
Sex
Female
Male
Technology
10x 3' v2
10x 3' v3
Suspension type
Cell
Related Links
hpap.pmacs.upenn.edu
Pancreas Atlas dataset page
GSE148073
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