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Cell Type
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Disease
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Technology
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Cell
871
Nucleus
653
Data Source
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Asap
43
Bgee
40
Cellxgene
2,045
Single cell portal
176
Sort
Most cells
Fewest cells
2304
datasets
CELLxGENE
52,309 cells
•
van Zyl et al., 2022
Cell atlas of the human ocular anterior segment: Tissue-specific and shared cell types
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
+15
Fibroblast
Eye trabecular meshwork
+1
Eye trabecular meshwork
30-year-old stage
+3
30-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Schwann cell
Mast cell
Melanocyte
Conjunctival epithelial cell
Blood vessel endothelial cell
Pericyte
Goblet cell
Lymphocyte
Endothelial cell of lymphatic vessel
Macrophage
Basal cell
Corneal epithelial cell
Corneal endothelial cell
Ciliary muscle cell
Endothelial cell
Tissue
Eye trabecular meshwork
Corneo-scleral junction
Developmental stage
30-year-old stage
66-year-old stage
65-year-old stage
47-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE199013
HumanCellAtlas:16e99159-78bc-44aa-b479-55a5e903bf50
BroadInstitute Single-Cell Portal:SCP1841/cell-atlas-of-the-human-ocular-anterior-segment-tissue-specific-and-shared-cell-types
CELLxGENE
52,045 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
+12
Fibroblast
Cerebellar nuclear complex
Cerebellar nuclear complex
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Astrocyte
Oligodendrocyte precursor cell
Oligodendrocyte
Vascular associated smooth muscle cell
Bergmann glial cell
Pericyte
Leukocyte
Ependymal cell
Central nervous system macrophage
Choroid plexus epithelial cell
Neuron
Endothelial cell
Tissue
Cerebellar nuclear complex
Developmental stage
42-year-old stage
50-year-old stage
29-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
NeMo archive:biccn/grant/u01_lein/linnarsson/transcriptome/sncell/10x_v3/human/raw
Github:linnarsson-lab/adult-human-brain
Github:linnarsson-lab/auto-annotation-ah
CELLxGENE
51,878 cells
•
Smith et al., 2021
Early role for a Na <sup>+</sup> ,K <sup>+</sup> -ATPase ( <i>ATP1A3<i> ) in brain development
Explore
h5ad
Homo sapiens
Homo sapiens
Gabaergic neuron
+2
Gabaergic neuron
Primary visual cortex
+3
Primary visual cortex
7-month-old stage
7-month-old stage
Normal
Normal
Drop-seq
Drop-seq
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Gabaergic neuron
Glial cell
Glutamatergic neuron
Tissue
Primary visual cortex
Parietal lobe
Temporal lobe
Prefrontal cortex
Developmental stage
7-month-old stage
Disease
Normal
Sex
Technology
Drop-seq
Suspension type
Nucleus
Related Links
dbGaP Study:phs001272
CELLxGENE
51,876 cells
•
Szabo et al., 2019
Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease
Explore
h5ad
Homo sapiens
Homo sapiens
Mature alpha-beta t cell
+5
Mature alpha-beta t cell
Bronchopulmonary lymph node
+3
Bronchopulmonary lymph node
52-year-old stage
+1
52-year-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Mature alpha-beta t cell
Cd8-positive, alpha-beta thymocyte
Cd8-positive, alpha-beta t cell
Immature alpha-beta t cell
Cd4-positive, alpha-beta thymocyte
Cd4-positive, alpha-beta t cell
Tissue
Bronchopulmonary lymph node
Lower lobe of left lung
Venous blood
Bone marrow
Developmental stage
52-year-old stage
65-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
Github:simslab/cluster_diffex2018
Github:simslab/scHPF
columbia.edu
GEO series:GSE126030
Github:simslab/umap_projection
Single Cell Expression Atlas Experiment:E-HCAD-8
HumanCellAtlas:4a95101c-9ffc-4f30-a809-f04518a23803
CELLxGENE
51,796 cells
•
Qiu et al., 2024
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Explore
h5ad
Mus musculus
Mus musculus
Endo-epithelial cell
+3
Endo-epithelial cell
Embryo
Embryo
Theiler stage 26
+15
Theiler stage 26
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Endo-epithelial cell
Intestinal enteroendocrine cell
Intestine goblet cell
Extraembryonic cell
Tissue
Embryo
Developmental stage
Theiler stage 26
Theiler stage 18
Theiler stage 13
Theiler stage 24
Theiler stage 15
Theiler stage 14
Theiler stage 12
Theiler stage 23
Theiler stage 20
Theiler stage 22
Theiler stage 16
Theiler stage 21
Theiler stage 25
Theiler stage 27
Theiler stage 17
Theiler stage 19
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GEO series:GSE186069
GEO series:GSE228590
Ontogeny of Mouse, Graphed
CELLxGENE
51,645 cells
•
Wang et al., 2022
Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal ganglion cell
+10
Retinal ganglion cell
Retina
Retina
74-year-old stage
+3
74-year-old stage
Normal
Normal
Female
+1
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off-bipolar cell
Retinal rod cell
Astrocyte
Amacrine cell
Retina horizontal cell
Rod bipolar cell
Retinal cone cell
On-bipolar cell
Mueller cell
Microglial cell
Tissue
Retina
Developmental stage
74-year-old stage
85-year-old stage
55-year-old stage
87-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x multiome
Suspension type
Nucleus
Related Links
GEO series:GSE196235
eyemultiome.su.domains
Zenodo record:6795162#.Y_bNQ-zMI0Q
Zenodo record:6796067#.Y_bNaOzMI0Q
Zenodo record:6330053#.Y_bNmOzMI0Q
HumanCellAtlas:4f4f0193-ede8-4a82-8cb0-7a0a22f06e63
BroadInstitute Single-Cell Portal:SCP1755/joint-scrna-seq-and-scatac-seq-atlas-of-the-adult-human-retina#study-download
Single Cell Portal
51,645 cells
Explore
Homo sapiens
Homo sapiens
Retinal ganglion cell
+10
Retinal ganglion cell
Normal
Normal
10x multiome
10x multiome
Organism
Homo sapiens
Cell type
Retinal ganglion cell
Off-bipolar cell
Retinal rod cell
Astrocyte
Amacrine cell
Retina horizontal cell
Rod bipolar cell
Retinal cone cell
On-bipolar cell
Mueller cell
Microglial cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x multiome
Suspension type
CELLxGENE
51,552 cells
•
Domínguez Conde et al., 2022
Cross-tissue immune cell analysis reveals tissue-specific features in humans
Explore
h5ad
Homo sapiens
Homo sapiens
Dendritic cell, human
+5
Dendritic cell, human
Sigmoid colon
+16
Sigmoid colon
Sixth decade stage
+2
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+2
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Dendritic cell, human
Alveolar macrophage
Non-classical monocyte
Macrophage
Conventional dendritic cell
Classical monocyte
Tissue
Sigmoid colon
Lung
Transverse colon
Caecum
Mesenteric lymph node
Liver
Lamina propria
Jejunal epithelium
Ileum
Blood
Bone marrow
Omentum
Spleen
Thymus
Skeletal muscle tissue
Duodenum
Thoracic lymph node
Developmental stage
Sixth decade stage
Eighth decade stage
Seventh decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 5' v2
10x 5' v1
Suspension type
Cell
Related Links
ArrayExpress BioStudies:E-MTAB-11536
pan-immune.cells.ucsc.edu
celltypist.org
HumanCellAtlas:04e4292c-f62f-4098-ae9b-fd69ae002a90
BroadInstitute Single-Cell Portal:SCP1845
CELLxGENE
51,367 cells
•
Bhat-Nakshatri et al., 2024
Single-nucleus chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
+7
Fibroblast
Upper outer quadrant of breast
+1
Upper outer quadrant of breast
Adult stage
Adult stage
Normal
Normal
Female
Female
10x multiome
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Adipocyte
Macrophage
Luminal hormone-sensing cell of mammary gland
Basal-myoepithelial cell of mammary gland
Luminal adaptive secretory precursor cell of mammary gland
T cell
Endothelial cell
Tissue
Upper outer quadrant of breast
Breast
Developmental stage
Adult stage
Disease
Normal
Sex
Female
Technology
10x multiome
Suspension type
Nucleus
Related Links
GEO series:GSE244594
HumanCellAtlas:815c5ef5-0fb1-4eb7-9882-1d160362468e
CELLxGENE
51,227 cells
•
Emont et al., 2022
A single-cell atlas of human and mouse white adipose tissue
Explore
h5ad
Mus musculus
Mus musculus
Preadipocyte
Preadipocyte
Periovarian fat pad
+2
Periovarian fat pad
19-week-old stage
19-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Preadipocyte
Tissue
Periovarian fat pad
Epididymal fat pad
Inguinal fat pad
Developmental stage
19-week-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
BroadInstitute Single-Cell Portal:SCP1376
gitlab.com
GEO series:GSE176067
dbGaP Study:phs002766
GEO series:GSE176171
CELLxGENE
51,176 cells
•
Sim et al., 2021
Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor
Explore
h5ad
Homo sapiens
Homo sapiens
Fibroblast
+7
Fibroblast
Apical region of left ventricle
Apical region of left ventricle
35-year-old stage
+7
35-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Fibroblast
Mesothelial cell of epicardium
Smooth muscle cell
Cardiac muscle cell
Leukocyte
Erythrocyte
Neuron
Endothelial cell
Tissue
Apical region of left ventricle
Developmental stage
35-year-old stage
42-year-old stage
4-year-old stage
19th week post-fertilization stage
41-year-old stage
10-year-old stage
14-year-old stage
20th week post-fertilization stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GEO series:GSE156707
bphipson.github.io
Single Cell Portal
51,020 cells
•
Hodis et al., 2022
Stepwise-edited, human melanoma models reveal mutations’ effect on tumor and microenvironment
Explore
Homo sapiens
+1
Homo sapiens
Fibroblast
+8
Fibroblast
Cutaneous melanoma
Cutaneous melanoma
10x 3' v3
+1
10x 3' v3
Organism
Homo sapiens
Mus musculus
Cell type
Fibroblast
Melanocyte
Neutrophil
Epithelial cell
Dendritic cell
Pericyte
Plasmacytoid dendritic cell
Macrophage
Endothelial cell
Tissue
Developmental stage
Disease
Cutaneous melanoma
Sex
Technology
10x 3' v3
10x 3' v2
Suspension type
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