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Cell Type
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Tissue
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Developmental Stage
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Disease
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Sex
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Technology
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Suspension Type
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Cell
934
Nucleus
679
Data Source
0
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
ASAP
v8
35,959 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Organism
Microcebus murinus
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
CELLxGENE
35,957 cells
•
Karakasheva et al., 2026
An Epigenetic Basis for Sustained Inflammatory Epithelial Progenitor Cell States in Crohn’s Disease
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+12
Endothelial cell
Right colon
Right colon
13-year-old stage
+7
13-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Mature nk t cell
Mast cell
Epithelial cell
Cd8-positive, alpha-beta memory t cell
Macrophage
Neuronal receptor cell
Plasma cell
Cd4-positive, alpha-beta memory t cell
B cell
Monocyte
Myofibroblast cell
Fibroblast
Tissue
Right colon
Developmental stage
13-year-old stage
17-year-old stage
8-year-old stage
15-year-old stage
9-year-old stage
14-year-old stage
16-year-old stage
10-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE305528
CELLxGENE
35,954 cells
•
Dong et al., 2024
Transcriptome Analysis of Archived Tumor Tissues by Visium, GeoMx DSP, and Chromium Methods Reveals Inter- and Intra-Patient Heterogeneity
Explore
h5ad
Homo sapiens
Homo sapiens
Granulocyte
+18
Granulocyte
Lung parenchyma
Lung parenchyma
Adult stage
Adult stage
Lung adenocarcinoma
+1
Lung adenocarcinoma
Cell
Cell
Organism
Homo sapiens
Cell type
Granulocyte
Dendritic cell, human
Natural killer cell
Cytotoxic t cell
Mast cell
Natural t-regulatory cell
Capillary endothelial cell
Classical monocyte
Smooth muscle cell
Plasmacytoid dendritic cell
Macrophage
Activated cd8-positive, alpha-beta t cell
Fibroblast of lung
Plasma cell
Malignant cell
Cd4-positive, alpha-beta memory t cell
Pericyte
Epithelial cell of lung
Conventional dendritic cell
Tissue
Lung parenchyma
Developmental stage
Adult stage
Disease
Lung adenocarcinoma
Squamous cell lung carcinoma
Sex
Technology
Suspension type
Cell
Related Links
E-MTAB-14560
E-MTAB-14566
github.com
CELLxGENE
35,896 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Podocyte
+13
Podocyte
Kidney
Kidney
13-week-old stage
13-week-old stage
Normal
Normal
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Podocyte
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney granular cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Macula densa epithelial cell
Mesangial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
13-week-old stage
Disease
Normal
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
ncbi.nlm.nih.gov
Kidney Slide-seq Github
protocols.io
Macosko Lab Slide-seq Github
grekalab.org
CELLxGENE
35,839 cells
•
Liu et al., 2022
Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response
Explore
h5ad
Homo sapiens
Homo sapiens
Cd8-positive, alpha-beta t cell
+7
Cd8-positive, alpha-beta t cell
Lung
Lung
61-year-old stage
61-year-old stage
Renal cell carcinoma
Renal cell carcinoma
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
Cd8-positive, alpha-beta t cell
Exhausted t cell
Cd4-positive helper t cell
Regulatory t cell
Myeloid cell
Plasma cell
Malignant cell
B cell
Tissue
Lung
Developmental stage
61-year-old stage
Disease
Renal cell carcinoma
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
singlecell.broadinstitute.org
github.com
CELLxGENE
35,805 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Molar dental pulp
+1
Molar dental pulp
15-year-old stage
+2
15-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Perivascular cell
Endothelial cell
Dental pulp cell
Macrophage
Glial cell
Odontoblast
Tissue
Molar dental pulp
Tooth root apical papilla
Developmental stage
15-year-old stage
24-year-old stage
Young adult stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GSE146123
Cellxgene Gateway
CELLxGENE
35,718 cells
•
Almanzar et al., 2020
A single-cell transcriptomic atlas characterizes ageing tissues in the mouse
Explore
h5ad
Mus musculus
Mus musculus
T cell
+11
T cell
Spleen
Spleen
4-week-old stage
+3
4-week-old stage
Normal
Normal
Female
+1
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
T cell
Granulocyte
Natural killer cell
Mature nk t cell
Immature nk t cell
Macrophage
Macrophage dendritic cell progenitor
Plasma cell
B cell
Megakaryocyte-erythroid progenitor cell
Erythroblast
Proerythroblast
Tissue
Spleen
Developmental stage
4-week-old stage
3-month-old stage
20-month-old stage and over
18-month-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
GSE132042
Processed files
Tabula Muris Senis
SmartSeq2 for HTP Generation of FACS Sorted Single Cell Libraries V.1
github.com
CELLxGENE
35,699 cells
•
Wang et al., 2023
Dysregulated lung stroma drives emphysema exacerbation by potentiating resident lymphocytes to suppress an epithelial stem cell reservoir
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Alveolus of lung
Alveolus of lung
65-year-old stage
+4
65-year-old stage
Pulmonary emphysema
+1
Pulmonary emphysema
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Natural killer cell
Mast cell
Macrophage
Alveolar macrophage
Plasma cell
B cell
Monocyte
Dendritic cell
Tissue
Alveolus of lung
Developmental stage
65-year-old stage
61-year-old stage
60-year-old stage
63-year-old stage
73-year-old stage
Disease
Pulmonary emphysema
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
GSE196638
explore.data.humancellatlas.org
CELLxGENE
35,637 cells
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+8
T cell
Cerebellum
Cerebellum
Pediatric stage
Pediatric stage
Pilocytic astrocytoma
+1
Pilocytic astrocytoma
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Macrophage
Interneuron
Bergmann glial cell
Neuron
Astrocyte
Tissue
Cerebellum
Developmental stage
Pediatric stage
Disease
Pilocytic astrocytoma
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
explore.data.humancellatlas.org
ASAP
v8
35,637 cells
Explore
h5ad
Homo sapiens
Homo sapiens
Organism
Homo sapiens
Cell type
Tissue
Developmental stage
Disease
Sex
Technology
Suspension type
Single Cell Portal
35,551 cells
Explore
Mus musculus
Mus musculus
Pituitary gland cell
Pituitary gland cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Mus musculus
Cell type
Pituitary gland cell
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
CELLxGENE
35,359 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+21
T cell
Brodmann (1909) area 23
Brodmann (1909) area 23
42-year-old stage
+2
42-year-old stage
Normal
Normal
Male
Male
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
T cell
Central nervous system macrophage
Natural killer cell
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Committed oligodendrocyte precursor
Lamp5 lhx6 neuron
Pvalb chandelier gabaergic interneuron
Medial ganglionic eminence derived interneuron
Microglial cell
Pericyte
Cerebral cortex neuron
Near-projecting glutamatergic cortical neuron
Neuron
Monocyte
Intratelencephalic-projecting glutamatergic cortical neuron
Caudal ganglionic eminence derived interneuron
Vascular associated smooth muscle cell
Sst chodl gabaergic interneuron
Astrocyte
Fibroblast
Tissue
Brodmann (1909) area 23
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
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