Mus musculus

Neuron

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 24 Theiler stage 15 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 25 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Fibroblast Effector memory cd4-positive, alpha-beta t cell Endothelial cell of vascular tree Mast cell Igg plasma cell Effector memory cd8-positive, alpha-beta t cell Vein endothelial cell Naive t cell Myeloid dendritic cell Exhausted t cell Malignant cell Memory b cell Vascular associated smooth muscle cell Capillary endothelial cell Pericyte Myofibroblast cell Cd8-positive, alpha-beta regulatory t cell Cd4-positive, cd25-positive, ccr4-positive, alpha-beta regulatory t cell Cycling stromal cell Plasmacytoid dendritic cell Cd4-positive helper t cell Natural killer cell Macrophage Cycling macrophage Conventional dendritic cell Cycling t cell T follicular helper cell Endothelial cell Endothelial cell of artery

Breast

54-year-old stage 35-year-old stage Adult stage 62-year-old stage 80 year-old and over stage 73-year-old stage Ninth decade stage 83-year-old stage 85-year-old stage 61-year-old stage 57-year-old stage Sixth decade stage 82-year-old stage 49-year-old stage 42-year-old stage 36-year-old stage 52-year-old stage 70-year-old stage 38-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage Eighth decade stage 30-year-old stage 55-year-old stage 58-year-old stage 50-year-old stage 79-year-old stage 64-year-old stage 29-year-old stage 66-year-old stage Late adult stage 69-year-old stage 32-year-old stage Fifth decade stage 88-year-old stage 63-year-old stage 60-year-old stage 80-year-old stage Prime adult stage 84-year-old stage 25-year-old stage 37-year-old stage Middle aged stage 46-year-old stage 67-year-old stage 43-year-old stage 60-79 year-old stage 65-year-old stage 71-year-old stage Seventh decade stage 34-year-old stage 47-year-old stage

Invasive lobular breast carcinoma Breast apocrine carcinoma Her2 positive breast carcinoma Breast mucinous carcinoma Breast carcinoma Triple-negative breast carcinoma Invasive ductal breast carcinoma Invasive tubular breast carcinoma Breast cancer Metaplastic breast carcinoma Estrogen-receptor positive breast cancer

Female Male

10x 5' transcription profiling 10x 3' v3 10x 5' v2 10x 5' v1 10x 3' v2

Cell

Mus musculus

Fibroblast Cerebellar granule cell Inhibitory interneuron Cerebellar golgi cell Oligodendrocyte precursor cell Oligodendrocyte Astrocyte of the cerebellum Purkinje cell Bergmann glial cell Interneuron Ependymal cell Endothelial stalk cell Glutamatergic neuron Macrophage Microglial cell Endothelial cell

Cerebellum

8-week-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Innate lymphoid cell Germinal center t cell Effector memory cd4-positive, alpha-beta t cell Mucosal invariant t cell Cd16-positive, cd56-dim natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Cd4-positive, cd25-positive, alpha-beta regulatory t cell Central memory cd4-positive, alpha-beta t cell Cd4-positive, alpha-beta memory t cell Gamma-delta t cell Naive thymus-derived cd4-positive, alpha-beta t cell Effector memory cd4-positive, alpha-beta t cell, terminally differentiated Naive thymus-derived cd8-positive, alpha-beta t cell Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Central memory cd8-positive, alpha-beta t cell Group 3 innate lymphoid cell Cd8-positive, alpha-beta memory t cell

Lung Mesenteric lymph node Jejunal epithelium Blood Epithelial lining fluid Bone marrow Spleen Thoracic lymph node Jejunum lamina propria Inguinal lymph node

27-year-old stage 73-year-old stage Third decade stage Sixth decade stage Fourth decade stage 48-year-old stage Eighth decade stage 23-year-old stage 75-year-old stage 64-year-old stage 68-year-old stage 33-year-old stage Fifth decade stage 25-year-old stage 56-year-old stage 67-year-old stage 20-year-old stage

Normal

Female Male

10x 3' v3 10x 5' v2

Cell

Homo sapiens

Plasmablast B cell Gamma-delta t cell Non-classical monocyte Plasmacytoid dendritic cell Progenitor cell Cd8-positive, alpha-beta t cell Natural killer cell Conventional dendritic cell Classical monocyte Cd4-positive, alpha-beta t cell

Blood

35-year-old stage Adult stage 39-year-old stage 62-year-old stage 78-year-old stage 80 year-old and over stage 73-year-old stage 74-year-old stage 53-year-old stage 83-year-old stage 61-year-old stage 82-year-old stage 49-year-old stage 42-year-old stage 86-year-old stage 48-year-old stage 38-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage 55-year-old stage 58-year-old stage 75-year-old stage 50-year-old stage 79-year-old stage 68-year-old stage 66-year-old stage 77-year-old stage 33-year-old stage 69-year-old stage 76-year-old stage 31-year-old stage 63-year-old stage 60-year-old stage 25-year-old stage 37-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 71-year-old stage 44-year-old stage 34-year-old stage 47-year-old stage

Respiratory system disorder Covid-19 Normal

Female Male

10x 5' transcription profiling

Cell

Homo sapiens

Fibroblast Cord blood hematopoietic stem cell Professional antigen presenting cell Sertoli cell Myeloid cell Astrocyte Mast cell Stratified epithelial cell Enterocyte Embryonic stem cell Acinar cell Epithelial cell of proximal tubule Mesenchymal stem cell Inflammatory cell Smooth muscle cell Neutrophil Epithelial cell Stromal cell Primordial germ cell Plasma cell Oligodendrocyte Dendritic cell B cell Chondrocyte Endocrine cell Erythroid progenitor cell Thyroid follicular cell Pulmonary alveolar type 2 cell Goblet cell Erythroid lineage cell Cell of skeletal muscle Macrophage Renal intercalated cell Epithelial cell of exocrine pancreas Kidney loop of henle epithelial cell Alternatively activated macrophage Monocyte Basal cell Mesothelial cell T cell Neuron Peptic cell Endothelial cell Ventricular cardiac muscle cell

Skin of body Trachea Umbilical cord blood Vault of skull Embryonic stem cell Stomach Ascending colon Adrenal gland Sigmoid colon Lung Transverse colon Bladder organ Liver Placenta Ileum Blood Muscle organ Chorionic villus Temporal lobe Brain Vermiform appendix Prostate gland Bone marrow Cerebellum Thyroid gland Artery Omentum Spinal cord Kidney Adipose tissue Ovary Spleen Uterus Thymus Pleura Intestine Uterine cervix Pancreas Heart Esophagus Jejunum Rectum Duodenum Fallopian tube Gallbladder Ureter Testis Rib Eye

62-year-old stage 27-year-old stage 14th week post-fertilization stage 10th week post-fertilization stage 21-year-old stage 83-year-old stage 61-year-old stage 57-year-old stage Newborn stage (0-28 days) 49-year-old stage 36-year-old stage Embryonic stage 52-year-old stage 45-year-old stage 41-year-old stage 59-year-old stage 26th week post-fertilization stage 30-year-old stage 55-year-old stage 23-year-old stage 58-year-old stage 51-year-old stage 64-year-old stage 66-year-old stage 11th week post-fertilization stage 13th week post-fertilization stage 32-year-old stage 12th week post-fertilization stage 63-year-old stage 60-year-old stage 25-year-old stage 56-year-old stage 46-year-old stage 43-year-old stage 34-year-old stage 47-year-old stage

Normal

Female Male

Microwell-seq

Cell

Homo sapiens

Fibroblast Smooth muscle cell Follicular dendritic cell Dendritic cell Regulatory t cell Monocyte-derived dendritic cell Pericyte Plasmacytoid dendritic cell Adipocyte Cd8-positive, alpha-beta t cell Endothelial cell of lymphatic vessel Natural killer cell Macrophage Conventional dendritic cell Monocyte Cd4-positive, alpha-beta t cell T follicular helper cell Endothelial cell

Lymph node

Ninth decade stage Third decade stage Sixth decade stage Fourth decade stage Tenth decade stage Eighth decade stage Fifth decade stage Seventh decade stage

B-cell non-hodgkin lymphoma Normal

Female Male

10x multiome

Nucleus

Macaca fascicularis Mus musculus

Fibroblast Astrocyte Cerebellar granule cell Cerebellar golgi cell Cell Oligodendrocyte precursor cell Oligodendrocyte Purkinje cell Bergmann glial cell Unipolar brush cell Interneuron Brain pericyte Ependymal cell Endothelial stalk cell Central nervous system macrophage Microglial cell Neuron Connective tissue cell

Normal

10x 3' v3

Mus musculus musculus

Fibroblast Astrocyte Brain microvascular endothelial cell Mural cell Oligodendrocyte precursor cell Oligodendrocyte Microglial cell Choroid plexus epithelial cell Neuron

Normal

10x 3' transcription profiling

Homo sapiens

Mast cell Cardiac endothelial cell Endocardial cell Cardiac muscle cell Cardiac ventricle fibroblast Vascular associated smooth muscle cell Pericyte Lymphocyte Adipocyte Endothelial cell of lymphatic vessel Macrophage Cardiac neuron Mesothelial cell

Hypertrophic cardiomyopathy Dilated cardiomyopathy Normal

10x 3' v3

Homo sapiens

Innate lymphoid cell Common myeloid progenitor Myeloid cell Mast cell Langerhans cell Granulocyte Intermediate monocyte Myeloid dendritic cell Hematopoietic precursor cell Hematopoietic cell Basophil Neutrophil Mononuclear phagocyte Cd8-positive, alpha-beta thymocyte Plasma cell B cell Gamma-delta t cell Regulatory t cell Erythroid progenitor cell Naive thymus-derived cd4-positive, alpha-beta t cell Myeloid leukocyte Activated cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Hematopoietic stem cell Non-classical monocyte Colon macrophage Plasmacytoid dendritic cell Erythroid lineage cell Activated cd8-positive, alpha-beta t cell Leukocyte Cd8-positive, alpha-beta t cell Natural killer cell Macrophage Platelet Erythrocyte Thymocyte Monocyte Cd4-positive, alpha-beta thymocyte Mature nk t cell Classical monocyte Cd4-positive, alpha-beta t cell Microglial cell T cell T follicular helper cell Tissue-resident macrophage

Vasculature Skin of body Trachea Cardiac ventricle Chorioretinal region Myometrium Brown adipose tissue Left coronary artery Lacrimal gland Stomach Cortex of kidney Ascending colon Endometrium Sigmoid colon Lung Crista ampullaris Bladder organ Aorta Subcutaneous adipose tissue Mesenteric lymph node Liver Mucosa of stomach Conjunctiva Exocrine pancreas Ileum Blood Stomach smooth muscle Right cardiac atrium Muscle of abdomen Cornea Inferior vena cava Right ovary Prostate gland Skin of chest Abdominal aorta Large intestine Bone marrow Sclera Cardiac atrium Posterior part of tongue Kidney Sublingual gland Adipose tissue Eyelid Ovary Spleen Anterior part of tongue Thoracic aorta Uterus Muscle of pelvic diaphragm Small intestine Muscularis mucosae of stomach Thymus Left ovary Ocular surface region Buccal mucosa Posterior segment of eyeball Heart Skin of abdomen Retinal neural layer Jejunum Heart right ventricle Anterior segment of eyeball Coronary artery Duodenum Parotid gland Mammary gland Submandibular gland Testis Inguinal lymph node Lymph node Endocrine pancreas Eye Utricle of membranous labyrinth

74-year-old stage 26-year-old stage 61-year-old stage 57-year-old stage 42-year-old stage 36-year-old stage 40-year-old stage 38-year-old stage 45-year-old stage 59-year-old stage 55-year-old stage 22-year-old stage 33-year-old stage 69-year-old stage 60-year-old stage 56-year-old stage 37-year-old stage 46-year-old stage 67-year-old stage

Normal

Female Male

10x 3' v3 Smart-seq3 10x 5' v2 Smart-seq2

Cell

Homo sapiens

Fibroblast Innate lymphoid cell Pre-conventional dendritic cell Kupffer cell Double negative thymocyte B-1 b cell Common myeloid progenitor Osteoclast Hematopoietic multipotent progenitor cell Mast cell Langerhans cell Large pre-b-ii cell Group 2 innate lymphoid cell Granulocyte Early lymphoid progenitor Fraction a pre-pro b cell Neutrophil Pro-b cell Common dendritic progenitor Small pre-b-ii cell Plasma cell Immature b cell Dendritic cell Regulatory t cell Megakaryocyte Vascular associated smooth muscle cell B-2 b cell Naive thymus-derived cd4-positive, alpha-beta t cell Late pro-b cell Naive thymus-derived cd8-positive, alpha-beta t cell Hematopoietic stem cell Plasmacytoid dendritic cell Promonocyte Megakaryocyte-erythroid progenitor cell Granulocyte monocyte progenitor cell Natural killer cell Macrophage Mature b cell Cd8-alpha-alpha-positive, alpha-beta intraepithelial t cell Myelocyte Erythrocyte Group 3 innate lymphoid cell Monocyte Promyelocyte T cell Double-positive, alpha-beta thymocyte

Skin of body Mesenteric lymph node Liver Gut wall Bone marrow Kidney Spleen Yolk sac Thymus

Carnegie stage 19 Carnegie stage 20 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 23 16th week post-fertilization stage Carnegie stage 22 Carnegie stage 13 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 5' v1 10x 3' v2

Cell