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Technology
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Cell
896
Nucleus
659
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Asap
43
Bgee
40
Cellxgene
2,080
Single cell portal
183
Sort
Most cells
Fewest cells
2346
datasets
CELLxGENE
22,214 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+23
T cell
Liver
Liver
59-year-old stage
+3
59-year-old stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Hepatocyte
Natural killer cell
Erythrocyte
Endothelial cell
Mature nk t cell
Hematopoietic precursor cell
Mast cell
Cd8-positive, alpha-beta t cell
Classical monocyte
Intermediate monocyte
Plasmacytoid dendritic cell
Hepatic stellate cell
Myeloid dendritic cell
Macrophage
Myeloid cell
Plasma cell
Cd4-positive, alpha-beta t cell
B cell
Monocyte
Fibroblast
Intrahepatic cholangiocyte
Non-classical monocyte
Tissue
Liver
Developmental stage
59-year-old stage
67-year-old stage
60-year-old stage
36-year-old stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
CZ BioHub Portal:tabula-sapiens-portal
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
22,188 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+6
T cell
Liver
Liver
63-year-old stage
63-year-old stage
Breast cancer
Breast cancer
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
T cell
Blood vessel endothelial cell
Hepatocyte
Blood vessel smooth muscle cell
Macrophage
Malignant cell
Fibroblast
Tissue
Liver
Developmental stage
63-year-old stage
Disease
Breast cancer
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
22,168 cells
•
Gabitto et al., 2024
Integrated multimodal cell atlas of Alzheimer’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Sncg gabaergic interneuron
Sncg gabaergic interneuron
Middle temporal gyrus
Middle temporal gyrus
69-year-old stage
+22
69-year-old stage
Normal
+1
Normal
Female
+1
Female
10x multiome
+1
10x multiome
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Sncg gabaergic interneuron
Tissue
Middle temporal gyrus
Developmental stage
69-year-old stage
75-year-old stage
65-year-old stage
89-year-old stage
87-year-old stage
85-year-old stage
88-year-old stage
68-year-old stage
29-year-old stage
84-year-old stage
82-year-old stage
50-year-old stage
80-year-old stage
72-year-old stage
81-year-old stage
80 year-old and over stage
Adult stage
77-year-old stage
86-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
83-year-old stage
Disease
Normal
Dementia
Sex
Female
Male
Technology
10x multiome
10x 3' v3
Suspension type
Nucleus
Related Links
Alzheimer's Disease Research Center
Adult Changes in Thought Study
BRaIN-lab
Allen Brain Map:seattle-alzheimers-disease
AD knowledge portal:syn26223298
AWS Open Data:allen-sea-ad-atlas
CELLxGENE
22,157 cells
•
Marshall et al., 2022
High-resolution Slide-seqV2 spatial transcriptomics enables discovery of disease-specific cell neighborhoods and pathways
Explore
h5ad
Mus musculus
Mus musculus
Endothelial cell
+9
Endothelial cell
Kidney
Kidney
6-month-old stage
6-month-old stage
Autosomal dominant polycystic kidney disease
Autosomal dominant polycystic kidney disease
Male
Male
Slide-seqv2
Slide-seqv2
Organism
Mus musculus
Cell type
Endothelial cell
Kidney interstitial fibroblast
Blood vessel smooth muscle cell
Kidney collecting duct intercalated cell
Leukocyte
Macrophage
Kidney distal convoluted tubule epithelial cell
Kidney collecting duct principal cell
Kidney loop of henle thick ascending limb epithelial cell
Kidney proximal convoluted tubule epithelial cell
Tissue
Kidney
Developmental stage
6-month-old stage
Disease
Autosomal dominant polycystic kidney disease
Sex
Male
Technology
Slide-seqv2
Suspension type
Related Links
GEO series:GSE190094
protocols.io:library-generation-using-slide-seqv2-bpgzmjx6
Github:MacoskoLab/slideseq-tools
grekalab.org
Github:marshalljamie/Kidney-Slide-seq
CELLxGENE
22,125 cells
•
Yan et al., 2020
Cell Atlas of The Human Fovea and Peripheral Retina
Explore
h5ad
Homo sapiens
Homo sapiens
Endothelial cell
+3
Endothelial cell
Peripheral region of retina
+1
Peripheral region of retina
69-year-old stage
+6
69-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Endothelial cell
Microglial cell
Mueller cell
Astrocyte
Tissue
Peripheral region of retina
Fovea centralis
Developmental stage
69-year-old stage
65-year-old stage
53-year-old stage
74-year-old stage
64-year-old stage
60-year-old stage
78-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE148077
HumanCellAtlas:30dc3964-1135-4b56-b393-ce2dcbc6e379
BroadInstitute Single-Cell Portal:SCP839/cell-atlas-of-the-human-fovea-and-peripheral-retina
CELLxGENE
22,067 cells
•
de Morree et al., 2025
A molecular cell atlas of mouse lemur, an emerging model primate
Explore
h5ad
Microcebus murinus
Microcebus murinus
Neutrophil
+18
Neutrophil
Blood
Blood
Post-juvenile adult stage
Post-juvenile adult stage
Normal
Normal
Female
+1
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Microcebus murinus
Cell type
Neutrophil
Natural killer cell
Erythroid progenitor cell
Mature nk t cell
Hematopoietic precursor cell
Cd8-positive, alpha-beta t cell
Platelet
Erythroid lineage cell
Capillary endothelial cell
Epithelial cell
Megakaryocyte progenitor cell
Myeloid cell
Plasma cell
Cd4-positive, alpha-beta t cell
Mesothelial cell
B cell
Monocyte
Basophil
Conventional dendritic cell
Tissue
Blood
Developmental stage
Post-juvenile adult stage
Disease
Normal
Sex
Female
Male
Technology
Smart-seq2
10x 3' v2
Suspension type
Cell
Related Links
tabula-microcebus.sf.czbiohub.org
app.globus.org
UCSC Cell Browser:tabula-microcebus
CELLxGENE
22,066 cells
•
Serizay et al., 2025
Cyclin switch tailors a cell cycle variant to orchestrate multiciliogenesis
Explore
h5ad
Mus musculus
Mus musculus
Multiciliated ependymal cell
+3
Multiciliated ependymal cell
Multiciliated ependymal cell
Multiciliated ependymal cell
Theiler stage 27
Theiler stage 27
Normal
Normal
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Mus musculus
Cell type
Multiciliated ependymal cell
Deuterosomal cell
Radial glial cell
Neuron associated cell
Tissue
Multiciliated ependymal cell
Developmental stage
Theiler stage 27
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Cell
Related Links
DOI:10.1016/j.celrep.2024.115117
DOI:10.5281/zenodo.14105247
GEO series:GSE201773
CELLxGENE
22,056 cells
•
Tritschler et al., 2022
A transcriptional cross species map of pancreatic islet cells
Explore
h5ad
Sus scrofa domesticus
Sus scrofa domesticus
Pancreatic pp cell
+3
Pancreatic pp cell
Islet of langerhans
Islet of langerhans
Prime adult stage
Prime adult stage
Normal
Normal
Female
Female
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Sus scrofa domesticus
Cell type
Pancreatic pp cell
Pancreatic a cell
Pancreatic d cell
Type b pancreatic cell
Tissue
Islet of langerhans
Developmental stage
Prime adult stage
Disease
Normal
Sex
Female
Technology
10x 3' v2
Suspension type
Cell
Related Links
GEO series:GSE128565
GEO series:GSE198623
CELLxGENE
22,048 cells
•
Kamath et al., 2022
Single-cell genomic profiling of human dopamine neurons identifies a population that selectively degenerates in Parkinson’s disease
Explore
h5ad
Homo sapiens
Homo sapiens
Dopaminergic neuron
Dopaminergic neuron
Substantia nigra pars compacta
Substantia nigra pars compacta
75-year-old stage
+12
75-year-old stage
Parkinson disease
+2
Parkinson disease
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Dopaminergic neuron
Tissue
Substantia nigra pars compacta
Developmental stage
75-year-old stage
91-year-old stage
89-year-old stage
92-year-old stage
82-year-old stage
90-year-old stage
74-year-old stage
49-year-old stage
70-year-old stage
78-year-old stage
76-year-old stage
79-year-old stage
83-year-old stage
Disease
Parkinson disease
Normal
Lewy body dementia
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
BroadInstitute Single-Cell Portal:SCP1768
macoskolab.com
GEO series:GSE178265
HumanCellAtlas:c412be53-cf95-47c7-980c-c0a0caa2d3a0
CELLxGENE
22,033 cells
•
Klughammer et al., 2024
A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+5
T cell
Axilla
Axilla
37-year-old stage
37-year-old stage
Breast cancer
Breast cancer
Female
Female
Slide-seqv2
Slide-seqv2
Organism
Homo sapiens
Cell type
T cell
Blood vessel endothelial cell
Blood vessel smooth muscle cell
Macrophage
Malignant cell
Fibroblast
Tissue
Axilla
Developmental stage
37-year-old stage
Disease
Breast cancer
Sex
Female
Technology
Slide-seqv2
Suspension type
Related Links
humantumoratlas.org
dbGaP Study:phs002371
CELLxGENE
22,029 cells
•
The Tabula Sapiens Consortium* et al., 2022
The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans
Explore
h5ad
Homo sapiens
Homo sapiens
T cell
+27
T cell
Uterus
+2
Uterus
38-year-old stage
+1
38-year-old stage
Normal
Normal
Female
Female
Smart-seq2
+1
Smart-seq2
Cell
Cell
Organism
Homo sapiens
Cell type
T cell
Neutrophil
Granulocyte
Natural killer cell
Endothelial cell of lymphatic vessel
Endothelial cell
Mature nk t cell
Mast cell
Cd8-positive, alpha-beta t cell
Myometrial cell
Intermediate monocyte
Myeloid dendritic cell
Macrophage
Innate lymphoid cell
Regulatory t cell
Plasma cell
Cd4-positive, alpha-beta t cell
Epithelial cell of uterus
Ciliated epithelial cell
B cell
Pericyte
Skeletal muscle satellite stem cell
Adventitial cell
Monocyte
Vascular associated smooth muscle cell
Myofibroblast cell
Epithelial fate stem cell
Fibroblast
Tissue
Uterus
Endometrium
Myometrium
Developmental stage
38-year-old stage
45-year-old stage
Disease
Normal
Sex
Female
Technology
Smart-seq2
10x 3' v3
Suspension type
Cell
Related Links
AWS Open Data:tabula-sapiens
CZ BioHub Portal:tabula-sapiens-portal
HumanCellAtlas:10201832-7c73-4033-9b65-3ef13d81656a
UCSC Cell Browser:tabula-sapiens
DOI:10.1101/2024.12.03.626516
UCSC Genome Browser:hgTrackUi?hgsid=1437536541_FfasmBrAlAiA7oFphu1csVv0KHgc&db=hg38&c=chrX&g=tabulaSapiens
CELLxGENE
21,968 cells
•
Seeker et al., 2023
Brain matters: unveiling the distinct contributions of region, age, and sex to glia diversity and CNS function
Explore
h5ad
Homo sapiens
Homo sapiens
Oligodendrocyte precursor cell
+2
Oligodendrocyte precursor cell
Cervical spinal cord white matter
+2
Cervical spinal cord white matter
37-year-old stage
+12
37-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Oligodendrocyte precursor cell
Oligodendrocyte
Committed oligodendrocyte precursor
Tissue
Cervical spinal cord white matter
Brodmann (1909) area 4
White matter of cerebellum
Developmental stage
37-year-old stage
34-year-old stage
42-year-old stage
71-year-old stage
61-year-old stage
39-year-old stage
44-year-old stage
72-year-old stage
74-year-old stage
45-year-old stage
63-year-old stage
73-year-old stage
40-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
seeker-science.shinyapps.io
Github:Anna-Williams/Luise_Seeker_Human_WM_Glia
HumanCellAtlas:73011a86-4755-48ac-9f70-a28903b4ad77
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