Homo sapiens

Cultured cell

A-549

Normal

Sci-plex

Nucleus

Homo sapiens

Fibroblast of cardiac tissue

Heart right ventricle Apex of heart Heart left ventricle Interventricular septum

Pediatric stage Sixth decade stage Fifth decade stage Third decade stage Seventh decade stage Postnatal stage Fourth decade stage Eighth decade stage

Arrhythmogenic right ventricular cardiomyopathy Dilated cardiomyopathy Normal Non-compaction cardiomyopathy

Female Male

10x 3' v3 10x 3' v2

Nucleus

Homo sapiens

Glioblast Cell Erythrocyte Oligodendrocyte Neuroblast (sensu nematoda and protostomia) Neuroplacodal cell Neural crest cell Macrophage Neuroblast (sensu vertebrata) Radial glial cell Neuron Fibroblast

Cerebellum

13th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage

Normal

10x 3' v3 10x 3' v2

Cell

Callithrix jacchus

Gabaergic neuron

Brodmann (1909) area 25 Dorsolateral prefrontal cortex Parietal cortex Primary visual cortex Temporal cortex Prefrontal cortex Temporal lobe Primary somatosensory cortex Primary auditory cortex Brodmann (1909) area 23 Primary motor cortex Secondary visual cortex

Late adult stage Prime adult stage

Normal

Female Male

10x 3' v3

Nucleus

Mus musculus

Cell

Normal

Mixed sex

10x 3' v2

Mus musculus

T cell Neutrophil Podocyte Natural killer cell Renal beta-intercalated cell Kidney collecting duct epithelial cell Glomerular endothelial cell Endothelial cell Kidney loop of henle thin descending limb epithelial cell Kidney loop of henle cortical thick ascending limb epithelial cell Kidney glomerular epithelial cell Epithelial cell of proximal tubule Vasa recta descending limb cell Kidney cortex tubule cell Renal alpha-intercalated cell Kidney afferent arteriole endothelial cell Macrophage Kidney loop of henle medullary thick ascending limb epithelial cell Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney connecting tubule epithelial cell Kidney loop of henle epithelial cell Macula densa epithelial cell Mesangial cell B cell Pericyte Kidney loop of henle thin ascending limb epithelial cell Fibroblast Dendritic cell Kidney efferent arteriole endothelial cell

Renal medulla Renal glomerulus Kidney Outer medulla of kidney Inner medulla of kidney Cortex of kidney

Postnatal stage 12-week-old stage Prime adult stage Mature stage 2-month-old stage 8-week-old stage

Normal

Male

Dronc-seq 10x 3' transcription profiling 10x 3' v3 Drop-seq 10x 3' v2

Nucleus Cell

Homo sapiens

T cell Natural killer cell Oligodendrocyte precursor cell Oligodendrocyte Schwann cell Melanocyte Macrophage Microglial cell Pigmented epithelial cell B cell Pericyte Vascular associated smooth muscle cell Astrocyte Fibroblast Myelinating schwann cell

Normal

10x 3' v1

Homo sapiens

T cell Natural killer cell Oligodendrocyte precursor cell Endothelial cell Oligodendrocyte Schwann cell Melanocyte Macrophage Microglial cell Pigmented epithelial cell B cell Pericyte Vascular associated smooth muscle cell Astrocyte Fibroblast Myelinating schwann cell

Peripheral region of retina Cranial nerve ii Macula lutea Optic disc Sclera Pigmented layer of retina

69-year-old stage 65-year-old stage 71-year-old stage 53-year-old stage 30-year-old stage 50-year-old stage 72-year-old stage 74-year-old stage 67-year-old stage 77-year-old stage 33-year-old stage 47-year-old stage 76-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Oligodendrocyte precursor cell Oligodendrocyte Vascular leptomeningeal cell Pvalb chandelier gabaergic interneuron Lamp5 gabaergic interneuron Microglial cell Vip gabaergic interneuron L2/3-6 intratelencephalic projecting glutamatergic neuron L5 extratelencephalic projecting glutamatergic cortical neuron L6b glutamatergic cortical neuron Pvalb gabaergic interneuron Near-projecting glutamatergic cortical neuron Cerebral cortex endothelial cell Caudal ganglionic eminence derived interneuron Sncg gabaergic interneuron Astrocyte of the cerebral cortex Sst gabaergic interneuron Corticothalamic-projecting glutamatergic cortical neuron

Primary auditory cortex

42-year-old stage 43-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Glioblast Oligodendrocyte

Striatum Medulla oblongata Hindbrain Telencephalon Cortex Midbrain Dorsal plus ventral thalamus Lower layers of the cortex Frontal cortex Entorhinal cortex Midbrain tectum Metencephalon Basal forebrain Cerebellum Brain Hypothalamus Cerebellar peduncular complex Upper layers of the cortex Caudate-putamen Hippocampal formation Diencephalon Pons Cerebral subcortex Occipital cortex Forebrain

13th week post-fertilization stage 14th week post-fertilization stage 15th week post-fertilization stage 12th week post-fertilization stage Carnegie stage 20 9th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 16 Carnegie stage 15 Carnegie stage 18 11th week post-fertilization stage

Normal

10x 3' v3 10x 3' v2

Cell

Danio rerio

Fast muscle cell Slow muscle myoblast Slow muscle cell Fast muscle myoblast

Fast muscle tissue Multicellular anatomical structure Pharyngeal arch Slow muscle tissue

Pharyngula:prim-15 Hatching:long-pec Larval:protruding-mouth Pharyngula:prim-25 Segmentation:26+ somites Segmentation:14-19 somites Hatching:pec-fin Segmentation:20-25 somites Pharyngula:high-pec Pharyngula:prim-5

Normal

Sci-rna-seq3

Nucleus

Homo sapiens

Cerebellar granule cell Neuron Unipolar brush cell

Medial geniculate body Anterior nuclear group Corticomedial nuclear complex Pontine reticular formation Temporal fusiform gyrus Brodmann (1909) area 19 Intralaminar nuclear group Medial dorsal nucleus of thalamus Parabrachial nucleus Nucleus of medulla oblongata Red nucleus Pontine tegmentum Pontine nuclear group Globus pallidus Midbrain nucleus Hippocampal field Lateral nuclear group of thalamus Middle temporal gyrus Central amygdaloid nucleus Septal nuclear complex Cerebellar nuclear complex Epithalamus Dorsal tegmental nucleus Brodmann (1909) area 38 Lateral entorhinal cortex Medial entorhinal cortex Midbrain tectum Inferior olivary complex Substantia nigra Cerebrocerebellum Gray matter of midbrain Substantia innominata Pulvinar nucleus Hypothalamus Primary motor cortex Medial zone of hypothalamus Posterior parahippocampal gyrus Basolateral amygdaloid nuclear complex Cerebellar vermis Spinal cord Retrosplenial region Dentate gyrus of hippocampal formation Lateral posterior nucleus of thalamus Mammillary body Body of caudate nucleus Bed nucleus of stria terminalis Lateral geniculate body Pretectal region

42-year-old stage 29-year-old stage 50-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus