Homo sapiens

Neuroblast (sensu nematoda and protostomia)

Midbrain Midbrain tectum Striatum Cortex Hypothalamus Cerebral subcortex Metencephalon Basal forebrain Brain Forebrain Pons Cerebellum Entorhinal cortex Telencephalon Hippocampal formation Occipital cortex Diencephalon Choroid plexus epithelium Upper layers of the cortex Hindbrain Caudate-putamen Lower layers of the cortex Cerebellar peduncular complex Frontal cortex Medulla oblongata Head Dorsal plus ventral thalamus

Carnegie stage 20 Carnegie stage 18 14th week post-fertilization stage 10th week post-fertilization stage Carnegie stage 22 Carnegie stage 15 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 12th week post-fertilization stage 9th week post-fertilization stage Carnegie stage 16

Normal

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Double negative thymocyte Mucosal invariant t cell Effector memory cd8-positive, alpha-beta t cell Cd4-positive, alpha-beta cytotoxic t cell Central memory cd4-positive, alpha-beta t cell Activated cd4-positive, alpha-beta t cell, human Gamma-delta t cell Regulatory t cell Naive thymus-derived cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Lymphocyte Cd16-negative, cd56-bright natural killer cell, human Natural killer cell Activated cd8-positive, alpha-beta t cell, human

Blood

54-year-old stage 39-year-old stage 62-year-old stage 27-year-old stage 78-year-old stage 80 year-old and over stage 73-year-old stage 53-year-old stage Third decade stage 61-year-old stage Sixth decade stage 82-year-old stage 49-year-old stage 36-year-old stage Fourth decade stage 48-year-old stage 70-year-old stage 38-year-old stage 59-year-old stage Eighth decade stage 75-year-old stage 68-year-old stage 29-year-old stage Fifth decade stage 63-year-old stage 60-year-old stage 84-year-old stage 37-year-old stage 46-year-old stage 67-year-old stage Seventh decade stage 47-year-old stage

Covid-19 Normal

Female Male

10x 3' v3 Seq-well 10x 3' v2

Cell

Macaca fascicularis

Fibroblast Mast cell Neutrophil Plasma cell B cell Plasmacytoid dendritic cell, human Pulmonary alveolar type 2 cell Thymic conventional dendritic cell Pulmonary alveolar type 1 cell Macrophage Erythrocyte T cell Endothelial cell

Tuberculosis

Seq-well

Homo sapiens

Neuron

Primary motor cortex Perirhinal cortex Dentate gyrus of hippocampal formation Brodmann (1909) area 35 Ventral anterior nucleus of thalamus Globus pallidus Nucleus accumbens Primary somatosensory cortex Midbrain tectum Lateral nuclear group of thalamus Medial dorsal nucleus of thalamus Putamen Brodmann (1909) area 25 Corticomedial nuclear complex Piriform cortex Pontine tegmentum Accessory basal amygdaloid nucleus Anterior olfactory nucleus Hypothalamus Superior temporal gyrus Substantia nigra Primary auditory cortex Brodmann (1909) area 24 Uncal ca1 Anterior cortical amygdaloid nucleus Lateral entorhinal cortex Septal nuclear complex Basolateral amygdaloid nuclear complex Preoptic area Middle temporal gyrus Parabrachial nucleus Brodmann (1909) area 38 Agranular insular cortex Medial entorhinal cortex Lateral amygdaloid nucleus Supraoptic nucleus Posterior parahippocampal gyrus Median tuberal portion Substantia innominata Bed nucleus of stria terminalis Medial geniculate body Gray matter of midbrain Mammillary body Anterior nuclear group Central amygdaloid nucleus Subicular complex Brodmann (1909) area 43 Hippocampal field Rostral ca3 Brodmann (1909) area 40 Claustrum of brain Pretectal region

42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Innate lymphoid cell Group 3 innate lymphoid cell, human Mast cell Dendritic cell, human Stromal cell Mononuclear phagocyte Plasma cell B cell Cd34-negative, cd117-positive innate lymphoid cell, human Plasmacytoid dendritic cell Natural killer cell T cell Endothelial cell

Cystic lymph node

54-year-old stage 61-year-old stage 49-year-old stage 40-year-old stage 45-year-old stage 59-year-old stage

Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Astrocyte of the cerebral cortex Oligodendrocyte precursor cell Oligodendrocyte Cerebral cortex endothelial cell Vascular leptomeningeal cell Microglial cell

Primary motor cortex Primary visual cortex Dorsolateral prefrontal cortex Primary somatosensory cortex Primary auditory cortex Middle temporal gyrus Anterior cingulate cortex Angular gyrus

Sixth decade stage 42-year-old stage 50-year-old stage 29-year-old stage 60-year-old stage 43-year-old stage

Normal

Female Male

10x 3' v3

Nucleus

Homo sapiens

Retinal ganglion cell Retinal rod cell Amacrine cell Retina horizontal cell Retinal progenitor cell Retinal cone cell Retinal astrocyte Mueller cell Microglial cell

Peripheral region of retina Retina Central retina

14th week post-fertilization stage Prenatal stage 16th week post-fertilization stage 19th week post-fertilization stage 20th week post-fertilization stage 15th week post-fertilization stage 11th week post-fertilization stage 13th week post-fertilization stage 27th week post-fertilization stage 12th week post-fertilization stage 24th week post-fertilization stage 22nd week post-fertilization stage 18th week post-fertilization stage 9th week post-fertilization stage 17th week post-fertilization stage

Normal

Female Male

10x 3' v3 10x 3' v1 10x 3' v2

Cell

Homo sapiens

Plasmablast Effector memory cd4-positive, alpha-beta t cell Myeloid dendritic cell Central memory cd4-positive, alpha-beta t cell Memory b cell Gamma-delta t cell Naive thymus-derived cd4-positive, alpha-beta t cell Naive thymus-derived cd8-positive, alpha-beta t cell Non-classical monocyte Effector memory cd8-positive, alpha-beta t cell, terminally differentiated Natural killer cell Cd8-positive, alpha-beta memory t cell Classical monocyte Cd4-positive, alpha-beta t cell Naive b cell

Blood

Adult stage Young adult stage Middle aged stage 60-79 year-old stage

Rheumatoid arthritis Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Vein endothelial cell Neutrophil Stromal cell B cell Pulmonary capillary endothelial cell Pulmonary alveolar type 1 cell Lung macrophage Natural killer cell Monocyte T cell Pulmonary artery endothelial cell Lung multiciliated epithelial cell

Lingula of left lung Middle lobe of right lung Lower lobe of right lung Upper lobe of left lung Upper lobe of right lung

19-year-old stage 36-year-old stage 55-year-old stage 51-year-old stage 64-year-old stage 66-year-old stage 28-year-old stage 37-year-old stage 43-year-old stage 65-year-old stage 71-year-old stage

Normal

Female Male

10x 3' v3

Cell

Mus musculus

Primitive erythroid progenitor

Embryo

Theiler stage 26 Theiler stage 18 Theiler stage 13 Theiler stage 24 Theiler stage 15 Theiler stage 14 Theiler stage 12 Theiler stage 23 Theiler stage 20 Theiler stage 22 Theiler stage 16 Theiler stage 21 Theiler stage 27 Theiler stage 17 Theiler stage 19

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Skin fibroblast

Skin of hip Lower leg skin Skin of body Skin of back Skin of shoulder Skin of pes Skin of leg Skin of chest Hindlimb skin Skin of abdomen Skin of forearm Skin of trunk Inguinal region skin Skin of face Skin of cheek

54-year-old stage 35-year-old stage 39-year-old stage 62-year-old stage 27-year-old stage 73-year-old stage 74-year-old stage 26-year-old stage 53-year-old stage 57-year-old stage 49-year-old stage 42-year-old stage 36-year-old stage 52-year-old stage 48-year-old stage 38-year-old stage 41-year-old stage 59-year-old stage 30-year-old stage 55-year-old stage 23-year-old stage 58-year-old stage 75-year-old stage 22-year-old stage 18-year-old stage 51-year-old stage 79-year-old stage 64-year-old stage 68-year-old stage 29-year-old stage 66-year-old stage 33-year-old stage 32-year-old stage 28-year-old stage 31-year-old stage 63-year-old stage 25-year-old stage 56-year-old stage 37-year-old stage 46-year-old stage 24-year-old stage 67-year-old stage 43-year-old stage 65-year-old stage 44-year-old stage 34-year-old stage 47-year-old stage

Keloid Injury Localized scleroderma Normal

Female Male

10x 3' v3 Seq-well s3 Mars-seq 10x 3' v1 10x 5' v1 10x 3' v2

Cell

Mus musculus

L6b glutamatergic cortical neuron Astrocyte Lamp5 gabaergic interneuron L6 intratelencephalic projecting glutamatergic neuron L4/5 intratelencephalic projecting glutamatergic neuron L2/3 intratelencephalic projecting glutamatergic neuron Vip gabaergic interneuron Oligodendrocyte precursor cell Oligodendrocyte L6 corticothalamic-projecting glutamatergic cortical neuron L5 intratelencephalic projecting glutamatergic neuron Pericyte L5/6 near-projecting glutamatergic neuron Pvalb gabaergic interneuron Sncg gabaergic interneuron Sst gabaergic interneuron Perivascular macrophage L5 extratelencephalic projecting glutamatergic cortical neuron Vascular leptomeningeal cell Microglial cell Endothelial cell

Cerebral cortex

Prime adult stage

Normal

Male

10x 3' v3

Nucleus