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934
Nucleus
679
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ASAP
79
Bgee
40
CELLxGENE
2,213
Single Cell Portal
183
Sort
Most cells
Fewest cells
2515
datasets
CELLxGENE
127,659 cells
•
Article
Explore
h5ad
Homo sapiens
Homo sapiens
Retinal pigment epithelial cell
+1
Retinal pigment epithelial cell
Retinal pigment epithelial cell
Retinal pigment epithelial cell
Adult stage
Adult stage
Age-related macular degeneration
+1
Age-related macular degeneration
Female
+1
Female
10x 3' v3
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Retinal pigment epithelial cell
Retinal progenitor cell
Tissue
Retinal pigment epithelial cell
Developmental stage
Adult stage
Disease
Age-related macular degeneration
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Cell
Related Links
E-MTAB-11642
ebi.ac.uk
CELLxGENE
126,782 cells
•
Siletti et al., 2023
Transcriptomic diversity of cell types across the adult human brain
Explore
h5ad
Homo sapiens
Homo sapiens
Midbrain-derived inhibitory neuron
Midbrain-derived inhibitory neuron
Subthalamic nucleus
+44
Subthalamic nucleus
42-year-old stage
+3
42-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Midbrain-derived inhibitory neuron
Tissue
Subthalamic nucleus
Medial geniculate body
Lateral amygdaloid nucleus
Anterior nuclear group
Corticomedial nuclear complex
Pontine reticular formation
Centromedian nucleus of thalamus
Intralaminar nuclear group
Medial dorsal nucleus of thalamus
Parabrachial nucleus
Nucleus of medulla oblongata
Red nucleus
Pontine tegmentum
Pontine nuclear group
Globus pallidus
Midbrain nucleus
Lateral nuclear group of thalamus
Central amygdaloid nucleus
Ventral anterior nucleus of thalamus
Septal nuclear complex
Cerebellar nuclear complex
Median tuberal portion
Epithalamus
Dorsal tegmental nucleus
Midbrain tectum
Inferior olivary complex
Substantia nigra
Gray matter of midbrain
Substantia innominata
Anterior olfactory nucleus
Accessory basal amygdaloid nucleus
Pulvinar nucleus
Hypothalamus
Primary motor cortex
Medial zone of hypothalamus
Basolateral amygdaloid nuclear complex
Spinal cord
Dentate gyrus of hippocampal formation
Lateral posterior nucleus of thalamus
Mammillary body
Bed nucleus of stria terminalis
Lateral geniculate body
Pretectal region
Nucleus of dorsal thalamus
Preoptic area
Developmental stage
42-year-old stage
29-year-old stage
50-year-old stage
60-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
data.nemoarchive.org
github (analysis and figures)
github (auto-annotations)
CELLxGENE
126,743 cells
•
Qiu et al., 2024
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Explore
h5ad
Mus musculus
Mus musculus
Melanocyte
+4
Melanocyte
Embryo
Embryo
Theiler stage 22
+15
Theiler stage 22
Normal
Normal
Female
+1
Female
Sci-rna-seq3
Sci-rna-seq3
Nucleus
Nucleus
Organism
Mus musculus
Cell type
Melanocyte
Olfactory ensheathing cell
Perineuronal satellite cell
Myelinating schwann cell
Schwann cell precursor
Tissue
Embryo
Developmental stage
Theiler stage 22
Theiler stage 27
Theiler stage 24
Theiler stage 18
Theiler stage 25
Theiler stage 14
Theiler stage 16
Theiler stage 17
Theiler stage 15
Theiler stage 19
Theiler stage 26
Theiler stage 13
Theiler stage 20
Theiler stage 12
Theiler stage 21
Theiler stage 23
Disease
Normal
Sex
Female
Male
Technology
Sci-rna-seq3
Suspension type
Nucleus
Related Links
GSE186069
GSE228590
omg.gs.washington.edu
Single Cell Portal
126,507 cells
Explore
Homo sapiens
Homo sapiens
Endothelial cell
+5
Endothelial cell
Glioblastoma
+2
Glioblastoma
Single-cell rna sequencing
Single-cell rna sequencing
Organism
Homo sapiens
Cell type
Endothelial cell
Oligodendrocyte
Lymphocyte
Myeloid cell
Neoplastic cell
Pericyte
Tissue
Developmental stage
Disease
Glioblastoma
Diffuse glioma, h3 g34 mutant
Oligodendroglioma, idh-mutant and 1p/19q-codeleted, grade 3
Sex
Technology
Single-cell rna sequencing
Suspension type
Single Cell Portal
126,343 cells
Explore
Macaca fascicularis
Macaca fascicularis
Oligodendrocyte precursor cell
+8
Oligodendrocyte precursor cell
Normal
Normal
10x 3' v3
10x 3' v3
Organism
Macaca fascicularis
Cell type
Oligodendrocyte precursor cell
Oligodendrocyte
Ependymal cell
Microglial cell
Endothelial stalk cell
Interneuron
Neuron
Astrocyte
Fibroblast
Tissue
Developmental stage
Disease
Normal
Sex
Technology
10x 3' v3
Suspension type
Related Links
Github:ericminikel/nhp_deepbrain_aso
CELLxGENE
125,955 cells
•
Zhang et al., 2023
A human embryonic limb cell atlas resolved in space and time
Explore
h5ad
Homo sapiens
Homo sapiens
Osteoblast
+37
Osteoblast
Hindlimb
+1
Hindlimb
Carnegie stage 19
+7
Carnegie stage 19
Normal
Normal
Female
+1
Female
10x 5' v1
+1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Osteoblast
Muscle cell
Natural killer cell
Endothelial cell of lymphatic vessel
Erythrocyte
Fibroblast of dermis
Mast cell
Peridermal cell
Hypertrophic chondrocyte
Tendon cell
Basal cell
Endothelial cell of artery
Schwann cell
Melanocyte
Smooth muscle cell
Articular chondrocyte
Connective tissue cell
Early lymphoid progenitor
Primitive red blood cell
Chondroblast
Macrophage
Myelocyte
Common myeloid progenitor
Vein endothelial cell
Mesenchymal cell
Megakaryocyte
Skeletal muscle myoblast
Myoblast
B cell
Pericyte
Neuron
Reticulocyte
Monocyte
Conventional dendritic cell
Fibroblast
Schwann cell precursor
Chondrocyte
Muscle fibroblast
Tissue
Hindlimb
Forelimb
Developmental stage
Carnegie stage 19
9th week post-fertilization stage
Carnegie stage 23
10th week post-fertilization stage
Carnegie stage 17
Carnegie stage 16
Carnegie stage 15
Carnegie stage 18
Disease
Normal
Sex
Female
Male
Technology
10x 5' v1
10x 3' v2
Suspension type
Cell
Related Links
developmental.cellatlas.io
mouse scRNA-seq
human Visium
human scRNA-seq
github.com
CELLxGENE
125,886 cells
•
Article
Explore
h5ad
Mus musculus
Mus musculus
Glutamatergic neuron
+15
Glutamatergic neuron
Hippocampal formation
Hippocampal formation
9-week-old stage
9-week-old stage
Normal
Normal
Male
Male
10x 3' v2
10x 3' v2
Cell
Cell
Organism
Mus musculus
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Endothelial cell
Oligodendrocyte
Vascular leptomeningeal cell
Cajal-retzius cell
Endothelial cell of vascular tree
Ependymal cell
Macrophage
Microglial cell
Neuroblast (sensu vertebrata)
Choroid plexus epithelial cell
Pericyte
Astrocyte
Gabaergic neuron
Neural progenitor cell
Tissue
Hippocampal formation
Developmental stage
9-week-old stage
Disease
Normal
Sex
Male
Technology
10x 3' v2
Suspension type
Cell
Related Links
github.com
zenodo.org
CELLxGENE
125,530 cells
•
Wu et al., 2024
Interstitial macrophages are a focus of viral takeover and inflammation in COVID-19 initiation in human lung
Explore
h5ad
Homo sapiens
Homo sapiens
Neutrophil
+30
Neutrophil
Lower lobe of left lung
Lower lobe of left lung
57-year-old stage
57-year-old stage
Covid-19
Covid-19
Male
Male
10x 3' v3
+1
10x 3' v3
Cell
Cell
Organism
Homo sapiens
Cell type
Neutrophil
Club cell
Dendritic cell, human
Stromal cell
Natural killer cell
Erythrocyte
Pulmonary capillary endothelial cell
Gamma-delta t cell
Myeloid dendritic cell, human
Mature nk t cell
Mast cell
Cd8-positive, alpha-beta t cell
Pancreatic acinar cell
Basal cell
Smooth muscle cell
Intermediate monocyte
Plasmacytoid dendritic cell, human
Lung multiciliated epithelial cell
Lung macrophage
Regulatory t cell
Pulmonary alveolar type 1 cell
Lung endothelial cell
Fibroblast of lung
Plasma cell
Cd4-positive, alpha-beta t cell
Mesothelial cell
B cell
Epithelial cell of lung
Pulmonary alveolar type 2 cell
Lung pericyte
Non-classical monocyte
Tissue
Lower lobe of left lung
Developmental stage
57-year-old stage
Disease
Covid-19
Sex
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
synapse.org
PRJNA847631
CELLxGENE
125,289 cells
•
Litviňuková et al., 2020
Cells of the adult human heart
Explore
h5ad
Homo sapiens
Homo sapiens
Regular ventricular cardiac myocyte
Regular ventricular cardiac myocyte
Heart right ventricle
+3
Heart right ventricle
Sixth decade stage
+3
Sixth decade stage
Normal
Normal
Female
+1
Female
10x 3' v3
+1
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Regular ventricular cardiac myocyte
Tissue
Heart right ventricle
Apex of heart
Heart left ventricle
Interventricular septum
Developmental stage
Sixth decade stage
Fifth decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
10x 3' v2
Suspension type
Nucleus
Related Links
cells.ucsc.edu
ERP123138
support.10xgenomics.com
explore.data.humancellatlas.org
genome.ucsc.edu
teichlab.org
github.com
heartcellatlas.org
CELLxGENE
125,117 cells
•
Liu et al., 2021
Time-resolved systems immunology reveals a late juncture linked to fatal COVID-19
Explore
h5ad
Homo sapiens
Homo sapiens
Granulocyte
+9
Granulocyte
Blood
Blood
66-year-old stage
+31
66-year-old stage
Covid-19
+1
Covid-19
Female
+1
Female
10x 5' v1
10x 5' v1
Cell
Cell
Organism
Homo sapiens
Cell type
Granulocyte
Natural killer cell
Platelet
Classical monocyte
Intermediate monocyte
Plasmacytoid dendritic cell
Cd16-positive, cd56-dim natural killer cell, human
Conventional dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Non-classical monocyte
Tissue
Blood
Developmental stage
66-year-old stage
37-year-old stage
71-year-old stage
53-year-old stage
61-year-old stage
52-year-old stage
54-year-old stage
30-year-old stage
55-year-old stage
84-year-old stage
50-year-old stage
51-year-old stage
57-year-old stage
74-year-old stage
49-year-old stage
24-year-old stage
35-year-old stage
58-year-old stage
59-year-old stage
67-year-old stage
32-year-old stage
77-year-old stage
45-year-old stage
70-year-old stage
60-year-old stage
78-year-old stage
63-year-old stage
47-year-old stage
76-year-old stage
79-year-old stage
73-year-old stage
40-year-old stage
Disease
Covid-19
Normal
Sex
Female
Male
Technology
10x 5' v1
Suspension type
Cell
Related Links
niaid.nih.gov
github.com
ncbi.nlm.nih.gov
cells.ucsc.edu
explore.data.humancellatlas.org
CELLxGENE
124,917 cells
•
Nascimento et al., 2023
Protracted neuronal recruitment in the temporal lobes of young children
Explore
h5ad
Homo sapiens
Homo sapiens
Glutamatergic neuron
+9
Glutamatergic neuron
Entorhinal cortex
+1
Entorhinal cortex
13-year-old stage
+10
13-year-old stage
Normal
Normal
Female
+1
Female
10x 3' v3
10x 3' v3
Nucleus
Nucleus
Organism
Homo sapiens
Cell type
Glutamatergic neuron
Oligodendrocyte precursor cell
Oligodendrocyte
Inhibitory interneuron
Brain vascular cell
Ependymal cell
Microglial cell
Astrocyte
Neural progenitor cell
Cortical interneuron
Tissue
Entorhinal cortex
Ganglionic eminence
Developmental stage
13-year-old stage
21st week post-fertilization stage
2-year-old stage
50-year-old stage
51-year-old stage
2-month-old stage
3-year-old stage
1-month-old stage
Newborn stage (0-28 days)
79-year-old stage
27-year-old stage
Disease
Normal
Sex
Female
Male
Technology
10x 3' v3
Suspension type
Nucleus
Related Links
GSE199762
phs003509
CELLxGENE
124,440 cells
•
Xu et al., 2023
Automatic cell-type harmonization and integration across Human Cell Atlas datasets
Explore
h5ad
Homo sapiens
Homo sapiens
Central memory cd4-positive, alpha-beta t cell
+27
Central memory cd4-positive, alpha-beta t cell
Bronchopulmonary lymph node
+2
Bronchopulmonary lymph node
65-year-old stage
+6
65-year-old stage
Normal
Normal
Female
+1
Female
10x 5' v2
+3
10x 5' v2
Cell
Cell
Organism
Homo sapiens
Cell type
Central memory cd4-positive, alpha-beta t cell
T cell
Germinal center b cell
Dendritic cell, human
Stromal cell
Endothelial cell of lymphatic vessel
Activated cd4-positive, alpha-beta t cell
Endothelial cell
Mast cell
Effector memory cd4-positive, alpha-beta t cell
Classical monocyte
Plasmacytoid dendritic cell
Macrophage
Memory b cell
Cd16-positive, cd56-dim natural killer cell, human
Innate lymphoid cell
Regulatory t cell
Plasmablast
Plasma cell
T follicular helper cell
B cell
Mucosal invariant t cell
Central memory cd8-positive, alpha-beta t cell
Naive b cell
Conventional dendritic cell
Cd16-negative, cd56-bright natural killer cell, human
Effector memory cd8-positive, alpha-beta t cell
Non-classical monocyte
Tissue
Bronchopulmonary lymph node
Thoracic lymph node
Mesenteric lymph node
Developmental stage
65-year-old stage
Sixth decade stage
52-year-old stage
Fifth decade stage
Third decade stage
Seventh decade stage
Eighth decade stage
Disease
Normal
Sex
Female
Male
Technology
10x 5' v2
10x 5' v1
10x 3' v3
10x 3' v2
Suspension type
Cell
Related Links
scBS-seq data (PRJEB50820)
Smart-seq2 data, scATAC-seq data and 10x-Genomics Chromium droplet-based scRNA-seq data (EGAD00001008575)
CellTypist webpage
Analysis scripts
Teichmann Lab
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