Homo sapiens

Podocyte Endothelial cell Kidney loop of henle thin descending limb epithelial cell Kidney interstitial fibroblast Blood vessel smooth muscle cell Kidney collecting duct intercalated cell Leukocyte Kidney distal convoluted tubule epithelial cell Kidney collecting duct principal cell Kidney connecting tubule epithelial cell Kidney loop of henle thick ascending limb epithelial cell Mesangial cell Pericyte Kidney proximal convoluted tubule epithelial cell

Renal medulla

62-year-old stage

Normal

Male

Slide-seqv2

Mus musculus

B cell

Embryo

Theiler stage 22 Theiler stage 27 Theiler stage 24 Theiler stage 25 Theiler stage 15 Theiler stage 19 Theiler stage 26 Theiler stage 20 Theiler stage 21 Theiler stage 23

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Retinal pigment epithelial cell Off-bipolar cell On-bipolar cell Rod bipolar cell Retinal cone cell Retinal rod cell Retina horizontal cell Amacrine cell Mueller cell Astrocyte

Retina

Normal

Female

10x 3' v2

Cell

Mus musculus

Gabaergic amacrine cell Glycinergic amacrine cell Amacrine cell

Retina

5-week-old stage 9-week-old stage 4-month-old stage 12-week-old stage 25-week-old stage 11-week-old stage 7-week-old stage 2-week-old stage 8-week-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Mus musculus

Gabaergic amacrine cell Glycinergic amacrine cell Amacrine cell

Normal

10x 3' v3 10x 3' v2

Homo sapiens

Central memory cd4-positive, alpha-beta t cell Neutrophil Natural killer cell Erythrocyte Gamma-delta t cell Platelet Classical monocyte Plasmacytoid dendritic cell, human Lymphocyte Cd4-positive, alpha-beta cytotoxic t cell Naive thymus-derived cd8-positive, alpha-beta t cell Memory b cell Regulatory t cell Plasmablast Hematopoietic stem cell Naive thymus-derived cd4-positive, alpha-beta t cell Mucosal invariant t cell Transitional stage b cell Naive b cell Conventional dendritic cell Cd16-negative, cd56-bright natural killer cell, human Effector memory cd8-positive, alpha-beta t cell Immature neutrophil Non-classical monocyte

Blood

61-year-old stage 54-year-old stage 38-year-old stage 82-year-old stage 67-year-old stage 62-year-old stage 46-year-old stage 63-year-old stage 73-year-old stage

Covid-19 Normal

Female Male

10x 3' v3

Cell

Homo sapiens

Oligodendrocyte Peripheral nervous system neuron Neural crest cell Mesodermal cell Sensory neuron Myoblast Neuron Blood cell Neural progenitor cell

Neural tube

Carnegie stage 19 Carnegie stage 14 Carnegie stage 17 Carnegie stage 12

Normal

10x 3' v3

Cell

Drosophila melanogaster

Fat cell Tracheolar cell Somatic precursor cell Male germline cell Hemocyte Spermatid Spermatocyte cyst cell Spermatogonium Muscle cell Adult tracheocyte Early elongation stage spermatid Head cyst cell Mid-late elongation-stage spermatid Spermatocyte Pigment cell Early-mid elongation-stage spermatid

Testis

Day 1 of adulthood

Normal

Male

10x 3' v3

Macaca mulatta

Basket cell

Dorsolateral prefrontal cortex Brodmann (1909) area 19 Medial dorsal nucleus of thalamus Primary visual cortex Ventral lateral nucleus of thalamus Inferior temporal gyrus Medulla oblongata Prefrontal cortex Midbrain Entorhinal cortex Nucleus accumbens Cerebrocerebellum Primary somatosensory cortex Primary auditory cortex Primary motor cortex Inferior parietal cortex Head of caudate nucleus Corpus callosum Hippocampal formation Perirhinal cortex Pons Cerebellar vermis Anterior cingulate cortex Superior temporal sulcus Superior parietal cortex Lateral geniculate body Amygdala

Juvenile stage Prime adult stage

Normal

Female Male

Sci-rna-seq3

Nucleus

Homo sapiens

Lamp5 gabaergic interneuron

Middle temporal gyrus

69-year-old stage 75-year-old stage 65-year-old stage 89-year-old stage 43-year-old stage 87-year-old stage 85-year-old stage 88-year-old stage 68-year-old stage 29-year-old stage 84-year-old stage 82-year-old stage 50-year-old stage 80-year-old stage 72-year-old stage 81-year-old stage 80 year-old and over stage Adult stage 77-year-old stage 86-year-old stage 70-year-old stage 60-year-old stage 78-year-old stage 83-year-old stage

Normal Dementia

Female Male

10x multiome 10x 3' v3

Nucleus

Mus musculus

Seminal vesicle glandular cell Luminal cell of prostate epithelium Urethra urothelial cell Basal cell of prostate epithelium

Prostate gland Urethra

2-month-old stage

Normal

Male

10x 3' v3 10x 3' v2

Cell

Homo sapiens

Blood vessel endothelial cell Endothelial cell of lymphatic vessel Conjunctival epithelial cell Endothelial cell Mast cell Corneal epithelial cell Ciliary muscle cell Basal cell Schwann cell Melanocyte Leukocyte Lymphocyte Goblet cell Non-pigmented ciliary epithelial cell Smooth muscle cell of sphincter of pupil Macrophage Pigmented epithelial cell Pigmented ciliary epithelial cell Transit amplifying cell Pericyte Fibroblast Corneal endothelial cell

Cornea Ciliary body Eye trabecular meshwork Corneo-scleral junction Iris

66-year-old stage 65-year-old stage 30-year-old stage Adult stage 33-year-old stage 78-year-old stage 47-year-old stage

Normal

Female Male

10x 3' v3

Nucleus